Wall clock time and date at job start Mon Mar 30 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00148 * 2 1 4 4 H 1.48493 * 109.47138 * 269.99874 * 3 2 1 5 5 H 1.48494 * 109.47019 * 29.99885 * 3 2 1 6 6 H 1.48505 * 109.47201 * 149.99494 * 3 2 1 7 7 C 1.37880 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47522 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47531 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47314 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47018 * 180.02562 * 12 11 10 14 14 C 1.46845 * 111.00194 * 65.78749 * 13 12 11 15 15 C 1.53035 * 109.52393 * 185.83810 * 14 13 12 16 16 C 1.53129 * 109.31040 * 300.84227 * 15 14 13 17 17 C 1.53127 * 109.15660 * 57.59413 * 16 15 14 18 18 H 1.09007 * 109.50054 * 62.36236 * 17 16 15 19 19 C 1.52997 * 109.50256 * 182.44196 * 17 16 15 20 20 C 1.53000 * 109.47060 * 294.92447 * 19 17 16 21 21 F 1.39898 * 109.46890 * 180.02562 * 20 19 17 22 22 C 1.46851 * 110.99606 * 190.00163 * 13 12 11 23 23 H 0.97000 * 119.99455 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47496 * 59.98849 * 9 7 2 25 25 H 1.09007 * 109.47129 * 299.99645 * 9 7 2 26 26 H 1.08999 * 109.47452 * 59.99095 * 10 9 7 27 27 H 1.09010 * 109.46669 * 299.99595 * 10 9 7 28 28 H 1.08999 * 109.47123 * 59.99740 * 11 10 9 29 29 H 1.08998 * 109.47269 * 299.99829 * 11 10 9 30 30 H 1.08999 * 109.47052 * 59.99924 * 12 11 10 31 31 H 1.09001 * 109.46815 * 299.99729 * 12 11 10 32 32 H 1.09000 * 109.46408 * 305.85713 * 14 13 12 33 33 H 1.09007 * 109.46054 * 65.82463 * 14 13 12 34 34 H 1.09005 * 109.50278 * 60.76165 * 15 14 13 35 35 H 1.08994 * 109.50353 * 180.84381 * 15 14 13 36 36 H 1.08998 * 109.49350 * 297.70978 * 16 15 14 37 37 H 1.08999 * 109.55516 * 177.51372 * 16 15 14 38 38 H 1.09002 * 109.47153 * 174.92128 * 19 17 16 39 39 H 1.09001 * 109.46832 * 54.92319 * 19 17 16 40 40 H 1.09001 * 109.47194 * 299.99650 * 20 19 17 41 41 H 1.08992 * 109.47399 * 59.99823 * 20 19 17 42 42 H 1.08992 * 109.46175 * 54.13945 * 22 13 12 43 43 H 1.08994 * 109.44879 * 294.16790 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1501 0.0005 13 7 1.7399 -7.4223 0.0005 14 6 0.9893 -7.5966 -1.2495 15 6 0.1251 -8.8561 -1.1557 16 6 1.0244 -10.0698 -0.9049 17 6 1.8313 -9.8411 0.3762 18 1 1.1513 -9.7524 1.2236 19 6 2.7772 -11.0223 0.6018 20 6 1.9589 -12.2886 0.8618 21 9 2.8239 -13.3685 1.0686 22 6 2.6461 -8.5531 0.2380 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8895 25 1 0.6241 -2.5567 0.8904 26 1 2.8720 -3.6044 0.8904 27 1 2.8718 -3.6044 -0.8896 28 1 0.8532 -5.0451 -0.8885 29 1 0.8539 -5.0446 0.8914 30 1 3.1018 -6.0923 0.8900 31 1 3.1004 -6.0924 -0.8900 32 1 0.3503 -6.7290 -1.4135 33 1 1.6870 -7.6960 -2.0812 34 1 -0.5822 -8.7517 -0.3329 35 1 -0.4205 -8.9934 -2.0893 36 1 1.7053 -10.1980 -1.7463 37 1 0.4093 -10.9628 -0.7935 38 1 3.4145 -10.8183 1.4623 39 1 3.3969 -11.1656 -0.2834 40 1 1.3392 -12.1453 1.7470 41 1 1.3217 -12.4926 0.0014 42 1 3.2103 -8.3801 1.1544 43 1 3.3357 -8.6479 -0.6006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689866193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:08 Heat of formation + Delta-G solvation = -110.327965 kcal Electronic energy + Delta-G solvation = -19015.686459 eV Core-core repulsion = 16007.486051 eV Total energy + Delta-G solvation = -3008.200408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.52927 -40.30304 -37.13479 -35.62551 -34.10654 -32.97312 -30.49618 -29.26939 -26.83670 -25.26793 -24.00343 -23.21692 -21.98494 -21.32338 -20.63820 -18.42670 -17.16212 -17.05794 -16.57464 -16.53025 -16.38393 -16.13892 -15.49851 -15.14195 -15.02317 -14.73478 -14.37319 -14.06740 -13.81187 -13.42036 -13.35987 -13.01395 -12.96773 -12.80890 -12.34579 -12.22522 -12.14122 -12.06864 -11.96994 -11.64326 -11.57384 -11.43933 -11.32097 -11.15538 -11.09388 -10.82499 -10.55786 -9.25209 -8.20299 -6.31828 1.39157 1.40940 1.52142 2.40511 2.87619 3.12353 3.62877 3.74773 3.82519 4.01214 4.04013 4.13530 4.16830 4.22618 4.31860 4.47377 4.51345 4.53791 4.59372 4.64904 4.67366 4.78285 4.79416 4.84776 4.88932 5.00095 5.03861 5.12954 5.15320 5.22619 5.26029 5.28131 5.34043 5.37524 5.52089 5.55195 5.77342 5.86502 6.14648 6.21809 6.26479 6.85733 7.37485 8.91675 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.055569 B = 0.002774 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.760848 B =10090.001516 C =10389.648199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.102 4.102 12 C 0.067 3.933 13 N -0.548 5.548 14 C 0.047 3.953 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.075 4.075 18 H 0.081 0.919 19 C -0.140 4.140 20 C 0.056 3.944 21 F -0.239 7.239 22 C 0.059 3.941 23 H 0.264 0.736 24 H -0.012 1.012 25 H -0.011 1.011 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.567 -24.462 -0.856 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.135 4.135 11 C -0.140 4.140 12 C -0.061 4.061 13 N -0.272 5.272 14 C -0.080 4.080 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.094 4.094 18 H 0.100 0.900 19 C -0.178 4.178 20 C 0.002 3.998 21 F -0.221 7.221 22 C -0.068 4.068 23 H 0.072 0.928 24 H 0.007 0.993 25 H 0.008 0.992 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.112 -24.371 -0.466 24.574 hybrid contribution 0.722 1.231 -0.673 1.578 sum 3.834 -23.140 -1.139 23.483 Atomic orbital electron populations 1.70108 1.07861 1.27776 1.51762 1.26031 0.95811 1.03500 0.94740 0.85426 0.78660 0.78302 0.78540 1.19695 1.20653 1.18692 1.21743 0.93556 0.92522 1.50435 0.92210 1.19009 0.94482 0.93279 0.94557 1.21401 0.97973 0.93707 1.00383 1.21486 0.98007 0.93174 1.01332 1.22010 0.94995 0.88345 1.00755 1.61897 1.27811 1.01944 1.35557 1.22199 0.96840 0.99340 0.89665 1.21568 0.97784 0.93297 1.02482 1.21728 0.98408 0.98195 0.97010 1.21035 0.96783 0.92338 0.99247 0.90048 1.22082 0.98695 0.93724 1.03344 1.22240 0.91078 0.82379 1.04148 1.92727 1.73646 1.58821 1.96872 1.22149 0.93744 0.90220 1.00712 0.92759 0.99335 0.99245 0.93002 0.93293 0.93032 0.92689 0.90431 0.95052 0.91700 0.95238 0.91556 0.90392 0.91959 0.89804 0.90717 0.90884 0.89487 0.89116 0.90587 0.95044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.84 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.10 -4.05 5.15 30.59 0.16 -3.90 16 11 C -0.10 -3.56 5.14 30.59 0.16 -3.40 16 12 C 0.07 1.86 4.96 86.30 0.43 2.29 16 13 N -0.55 -13.35 4.66 -896.36 -4.17 -17.52 16 14 C 0.05 1.08 5.29 86.33 0.46 1.54 16 15 C -0.11 -1.95 6.09 30.65 0.19 -1.77 16 16 C -0.12 -1.55 4.98 30.68 0.15 -1.40 16 17 C -0.08 -1.09 2.35 -10.74 -0.03 -1.12 16 18 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 19 C -0.14 -1.73 5.14 30.59 0.16 -1.57 16 20 C 0.06 0.64 7.31 71.98 0.53 1.17 16 21 F -0.24 -4.29 17.36 44.97 0.78 -3.51 16 22 C 0.06 1.14 4.74 86.32 0.41 1.55 16 23 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 24 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 25 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.05 1.99 8.14 -2.38 -0.02 1.98 16 28 H 0.05 1.83 6.43 -2.39 -0.02 1.81 16 29 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 2.07 7.99 -2.39 -0.02 2.05 16 31 H 0.03 0.86 8.12 -2.39 -0.02 0.84 16 32 H 0.06 1.69 6.21 -2.39 -0.01 1.68 16 33 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.81 6.70 -2.39 -0.02 0.80 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.76 6.63 -2.39 -0.02 0.75 16 42 H 0.08 1.42 8.01 -2.39 -0.02 1.40 16 43 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -66.01 337.00 3.30 -62.70 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 0.94 Total: 5.74 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 3.45 Total: -36.51 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -3.89 Total: -75.37 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.78 Total: -3.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -66.01 3.30 -62.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689866193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.625 kcal (2) G-P(sol) polarization free energy of solvation -66.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds