Wall clock time and date at job start Mon Mar 30 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99606 * 2 1 4 4 C 1.53000 * 109.47262 * 76.23752 * 3 2 1 5 5 C 1.52996 * 109.47054 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47134 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00123 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00444 * 179.97438 * 6 5 4 9 9 N 1.31521 * 119.99822 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00412 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.46956 * 90.00193 * 10 8 6 12 12 H 1.48502 * 109.47111 * 330.00092 * 10 8 6 13 13 H 1.48502 * 109.47389 * 210.00262 * 10 8 6 14 14 C 1.46897 * 110.99995 * 236.05072 * 2 1 3 15 15 H 1.09000 * 108.19191 * 315.15315 * 14 2 1 16 16 C 1.53076 * 108.29434 * 197.98222 * 14 2 1 17 17 C 1.51661 * 104.89282 * 143.76077 * 16 14 2 18 18 C 1.54615 * 108.98684 * 105.60786 * 17 16 14 19 19 S 1.82331 * 110.93652 * 320.75930 * 18 17 16 20 20 C 1.79266 * 106.80177 * 319.08117 * 19 18 17 21 21 C 1.44821 * 108.29804 * 72.31850 * 14 2 1 22 22 H 1.09001 * 109.47134 * 62.34892 * 1 2 3 23 23 H 1.08999 * 109.46736 * 182.34840 * 1 2 3 24 24 H 1.09001 * 109.47189 * 302.34882 * 1 2 3 25 25 H 1.08999 * 109.47465 * 316.23211 * 3 2 1 26 26 H 1.09007 * 109.46562 * 196.23471 * 3 2 1 27 27 H 1.08996 * 109.47183 * 59.99878 * 4 3 2 28 28 H 1.09002 * 109.46788 * 299.99751 * 4 3 2 29 29 H 1.09008 * 109.46940 * 59.99696 * 5 4 3 30 30 H 1.08997 * 109.47452 * 300.00263 * 5 4 3 31 31 H 0.96997 * 119.99584 * 359.97438 * 9 8 6 32 32 H 1.09003 * 110.32173 * 262.75186 * 16 14 2 33 33 H 1.09001 * 110.31965 * 25.00525 * 16 14 2 34 34 H 1.09004 * 109.59156 * 345.75441 * 17 16 14 35 35 H 1.09003 * 109.66175 * 225.50074 * 17 16 14 36 36 H 1.09008 * 109.18409 * 200.38706 * 18 17 16 37 37 H 1.09002 * 109.19023 * 81.13245 * 18 17 16 38 38 H 1.08989 * 109.43820 * 328.58732 * 20 19 18 39 39 H 1.09003 * 109.39844 * 208.69780 * 20 19 18 40 40 H 1.09000 * 109.30624 * 305.91342 * 21 14 2 41 41 H 1.09003 * 109.30209 * 65.50693 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.8578 1.9706 1.4011 5 6 2.4066 3.3988 1.4012 6 6 2.2704 3.9891 2.7810 7 1 1.8363 3.4041 3.5783 8 6 2.7010 5.2758 3.0260 9 7 3.2301 5.9882 2.0553 10 14 2.5329 6.0073 4.7365 11 1 3.7575 5.7130 5.5232 12 1 1.3536 5.4128 5.4154 13 1 2.3540 7.4777 4.6308 14 6 1.9955 -0.7659 -1.1376 15 1 1.4320 -1.6960 -1.2116 16 6 3.4582 -1.1119 -0.8482 17 6 3.6537 -2.4980 -1.4319 18 6 4.4726 -2.3828 -2.7384 19 16 3.9658 -0.9175 -3.6978 20 6 2.1785 -0.8239 -3.5956 21 6 1.7685 0.0002 -2.3455 22 1 -0.3633 0.4769 -0.9103 23 1 -0.3633 -1.0268 0.0421 24 1 -0.3633 0.5499 0.8682 25 1 1.4328 1.9767 -0.7109 26 1 3.0468 1.3571 -0.2873 27 1 2.4205 1.3655 2.1119 28 1 0.8064 1.9850 1.6884 29 1 1.8442 4.0042 0.6902 30 1 3.4579 3.3841 1.1140 31 1 3.3177 5.6082 1.1671 32 1 4.1202 -0.3960 -1.3355 33 1 3.6384 -1.1257 0.2267 34 1 2.6828 -2.9437 -1.6485 35 1 4.1909 -3.1237 -0.7191 36 1 4.3142 -3.2776 -3.3405 37 1 5.5311 -2.3007 -2.4917 38 1 1.7665 -1.8299 -3.5178 39 1 1.7894 -0.3409 -4.4919 40 1 0.7120 0.2590 -2.4150 41 1 2.3617 0.9140 -2.3094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692330248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:21 Heat of formation + Delta-G solvation = -31.555827 kcal Electronic energy + Delta-G solvation = -17785.707734 eV Core-core repulsion = 15211.303224 eV Total energy + Delta-G solvation = -2574.404510 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.69276 -36.86928 -35.61705 -33.76802 -32.65883 -29.61087 -28.54630 -26.53843 -25.49835 -24.21421 -22.69336 -22.35982 -20.49938 -18.88853 -17.66181 -17.01302 -16.42793 -16.03385 -15.70887 -15.66485 -15.57014 -15.07096 -14.87294 -14.55803 -14.43765 -13.67917 -13.55802 -13.43783 -13.09232 -12.76794 -12.72605 -12.46815 -12.44280 -12.21817 -11.97210 -11.85574 -11.70280 -11.63599 -11.45295 -11.40071 -10.67202 -10.60693 -10.54576 -9.28597 -8.69806 -8.55655 -6.39952 0.71843 1.51772 1.61603 1.73520 1.79525 2.56365 2.91753 3.15355 3.52357 3.76328 3.85551 3.96138 4.03041 4.08732 4.23486 4.25610 4.39778 4.43977 4.53293 4.57313 4.62091 4.71209 4.71928 4.79773 4.82280 4.85019 4.94607 4.97998 5.06218 5.11582 5.14049 5.33375 5.38181 5.44445 5.52876 5.97544 6.09797 6.17111 6.22145 6.57776 7.42447 8.70879 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.031813 B = 0.004106 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.928620 B = 6818.203685 C = 7053.372077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.546 5.546 3 C 0.072 3.928 4 C -0.081 4.081 5 C 0.010 3.990 6 C -0.618 4.618 7 H 0.049 0.951 8 C -0.041 4.041 9 N -0.938 5.938 10 Si 1.121 2.879 11 H -0.271 1.271 12 H -0.269 1.269 13 H -0.281 1.281 14 C 0.086 3.914 15 H 0.088 0.912 16 C -0.122 4.122 17 C -0.115 4.115 18 C -0.072 4.072 19 S -0.309 6.309 20 C -0.070 4.070 21 C -0.144 4.144 22 H 0.030 0.970 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.046 0.954 29 H -0.015 1.015 30 H -0.013 1.013 31 H 0.254 0.746 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.774 -20.192 -10.629 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.269 5.269 3 C -0.056 4.056 4 C -0.119 4.119 5 C -0.027 4.027 6 C -0.656 4.656 7 H 0.067 0.933 8 C -0.237 4.237 9 N -0.576 5.576 10 Si 0.942 3.058 11 H -0.197 1.197 12 H -0.193 1.193 13 H -0.207 1.207 14 C -0.021 4.021 15 H 0.106 0.894 16 C -0.161 4.161 17 C -0.154 4.154 18 C -0.220 4.220 19 S -0.082 6.082 20 C -0.219 4.219 21 C -0.185 4.185 22 H 0.048 0.952 23 H 0.104 0.896 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.003 0.997 30 H 0.005 0.995 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.095 0.905 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.710 -18.440 -9.858 20.979 hybrid contribution -1.238 -1.294 -1.214 2.164 sum -2.948 -19.734 -11.072 22.819 Atomic orbital electron populations 1.22489 0.87151 1.02698 1.00485 1.62458 1.08327 1.13132 1.42961 1.21952 0.99155 0.88434 0.96069 1.21244 0.99692 0.94789 0.96144 1.19142 0.93980 0.93784 0.95824 1.22514 1.44307 1.01878 0.96902 0.93269 1.27507 0.92656 0.95141 1.08441 1.70892 1.43787 1.40026 1.02866 0.82893 0.77633 0.75454 0.69812 1.19669 1.19343 1.20667 1.20644 0.96629 0.97016 0.87855 0.89361 1.21778 0.95279 0.97595 1.01459 1.22000 1.00876 0.96911 0.95632 1.24045 1.03458 0.96615 0.97846 1.86512 1.09926 1.42539 1.69176 1.23413 0.92982 1.04164 1.01349 1.21345 1.02038 0.99749 0.95332 0.95203 0.89614 0.92428 0.95735 0.92010 0.93285 0.93508 0.99670 0.99519 0.93654 0.90912 0.91394 0.90376 0.89246 0.88353 0.87643 0.88093 0.87280 0.90476 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.10 127.69 1.16 1.65 16 2 N -0.55 -15.49 4.44 -911.67 -4.05 -19.54 16 3 C 0.07 2.56 3.50 86.30 0.30 2.86 16 4 C -0.08 -3.53 5.27 30.59 0.16 -3.37 16 5 C 0.01 0.56 4.28 29.85 0.13 0.69 16 6 C -0.62 -36.89 9.11 25.60 0.23 -36.66 16 7 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 8 C -0.04 -2.43 5.46 84.65 0.46 -1.97 16 9 N -0.94 -60.09 13.65 21.45 0.29 -59.80 16 10 Si 1.12 51.68 29.90 68.60 2.05 53.73 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 C 0.09 1.92 1.49 42.46 0.06 1.98 16 15 H 0.09 1.65 6.42 -2.39 -0.02 1.64 16 16 C -0.12 -2.76 4.46 30.18 0.13 -2.63 16 17 C -0.12 -1.78 5.70 30.70 0.18 -1.60 16 18 C -0.07 -1.10 6.60 72.53 0.48 -0.62 16 19 S -0.31 -6.51 20.07 -56.49 -1.13 -7.64 16 20 C -0.07 -1.23 5.94 72.75 0.43 -0.80 16 21 C -0.14 -3.15 4.00 28.89 0.12 -3.04 16 22 H 0.03 0.70 6.51 -2.39 -0.02 0.68 16 23 H 0.09 1.69 8.03 -2.39 -0.02 1.67 16 24 H 0.06 1.60 6.84 -2.39 -0.02 1.59 16 25 H 0.02 0.89 7.38 -2.39 -0.02 0.87 16 26 H 0.06 2.29 6.87 -2.38 -0.02 2.27 16 27 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 2.03 6.92 -2.39 -0.02 2.01 16 29 H -0.01 -0.87 8.01 -2.38 -0.02 -0.89 16 30 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 31 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16 32 H 0.07 1.90 6.11 -2.39 -0.01 1.89 16 33 H 0.07 1.77 7.99 -2.39 -0.02 1.75 16 34 H 0.08 1.04 6.54 -2.38 -0.02 1.03 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 1.39 7.88 -2.50 -0.02 1.37 16 39 H 0.11 1.78 8.14 -2.50 -0.02 1.76 16 40 H 0.08 1.63 6.30 -2.39 -0.02 1.61 16 41 H 0.06 1.56 6.62 -2.39 -0.02 1.55 16 Total: -1.00 -67.85 316.41 2.08 -65.77 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.08 Total: 10.99 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 3.85 Total: -43.50 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -3.76 Total: -79.35 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.05 Total: 53.73 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -1.13 Total: -7.64 kcal Total: -67.85 2.08 -65.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692330248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.215 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds