Wall clock time and date at job start Mon Mar 30 2020 06:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47527 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00126 * 2 1 3 5 5 C 1.50696 * 109.46919 * 294.99716 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 N 1.46504 * 109.47132 * 240.00060 * 2 1 3 14 14 C 1.35019 * 126.03319 * 325.00149 * 13 2 1 15 15 C 1.35361 * 107.72819 * 179.97438 * 14 13 2 16 16 Br 1.89103 * 126.04363 * 180.02562 * 15 14 13 17 17 C 1.39919 * 107.91292 * 0.02562 * 15 14 13 18 18 N 1.30846 * 108.20608 * 359.73882 * 17 15 14 19 19 H 1.09001 * 109.46743 * 59.99815 * 1 2 3 20 20 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47048 * 300.00084 * 1 2 3 22 22 H 1.09000 * 109.46497 * 174.99981 * 4 2 1 23 23 H 1.08999 * 109.46623 * 55.00045 * 4 2 1 24 24 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 25 25 H 1.07997 * 126.13202 * 359.95938 * 14 13 2 26 26 H 1.08000 * 125.89227 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0807 0.9746 2.3756 7 6 1.9932 -0.4018 3.7283 8 7 2.6815 -1.5157 3.8507 9 14 1.4997 0.5634 5.2496 10 1 0.1725 0.0953 5.7237 11 1 2.5093 0.3535 6.3181 12 1 1.4249 2.0085 4.9163 13 7 2.0184 -0.6906 -1.1962 14 6 1.4399 -1.7564 -1.7898 15 6 2.1963 -2.0927 -2.8608 16 35 1.8567 -3.5144 -4.0606 17 6 3.2738 -1.2023 -2.9232 18 7 3.1650 -0.3585 -1.9291 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 3.1263 -0.7995 1.2055 23 1 1.6053 -1.7198 1.2950 24 1 2.9380 -2.0168 3.0608 25 1 0.5359 -2.2519 -1.4677 26 1 4.0572 -1.2075 -3.6666 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695787494.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:47 Heat of formation + Delta-G solvation = 60.059722 kcal Electronic energy + Delta-G solvation = -11916.512971 eV Core-core repulsion = 9656.684623 eV Total energy + Delta-G solvation = -2259.828348 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.01228 -35.71883 -32.83650 -31.51663 -29.90001 -28.34268 -26.92109 -23.92124 -22.09102 -20.68232 -19.66539 -17.02102 -16.59726 -14.78433 -14.54267 -13.93272 -13.76535 -13.29232 -12.87726 -12.67423 -12.08116 -11.76612 -11.42569 -10.96546 -10.92832 -10.81016 -10.38991 -10.27128 -10.15766 -9.92742 -9.19132 -8.81427 -8.49193 -8.13884 -6.52373 -4.25063 1.86007 2.07919 2.78115 2.96821 3.35260 3.38958 3.54289 4.42461 4.87574 4.97576 5.23359 5.32814 5.51702 5.67374 5.75434 5.85387 6.18855 6.33404 6.47322 6.61048 7.00077 7.13337 7.29210 7.87293 7.93512 8.25248 8.67477 9.48012 10.87873 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.052043 B = 0.004864 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.884825 B = 5755.027338 C = 5852.825504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 H 0.098 0.902 4 C 0.006 3.994 5 C -0.605 4.605 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.905 5.905 9 Si 1.073 2.927 10 H -0.286 1.286 11 H -0.283 1.283 12 H -0.287 1.287 13 N -0.337 5.337 14 C 0.099 3.901 15 C -0.256 4.256 16 Br -0.039 7.039 17 C 0.063 3.937 18 N -0.287 5.287 19 H 0.047 0.953 20 H 0.057 0.943 21 H 0.094 0.906 22 H 0.017 0.983 23 H 0.014 0.986 24 H 0.270 0.730 25 H 0.177 0.823 26 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.780 -2.417 -14.804 15.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.058 3.942 3 H 0.116 0.884 4 C -0.032 4.032 5 C -0.643 4.643 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.540 5.540 9 Si 0.901 3.099 10 H -0.213 1.213 11 H -0.209 1.209 12 H -0.213 1.213 13 N -0.116 5.116 14 C -0.054 4.054 15 C -0.347 4.347 16 Br 0.044 6.956 17 C -0.124 4.124 18 N -0.108 5.108 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.113 0.887 22 H 0.035 0.965 23 H 0.032 0.968 24 H 0.080 0.920 25 H 0.194 0.806 26 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.322 -1.788 -12.846 13.389 hybrid contribution -0.333 -0.532 -1.853 1.956 sum -3.655 -2.320 -14.699 15.323 Atomic orbital electron populations 1.22093 0.93242 1.02635 1.02781 1.21833 0.94472 0.97209 0.80677 0.88421 1.19636 0.96703 0.95970 0.90885 1.21853 1.40225 1.10713 0.91553 0.92588 1.25891 0.94198 0.97002 1.01454 1.70751 1.34748 1.14757 1.33778 0.83474 0.76477 0.74885 0.75056 1.21286 1.20854 1.21309 1.49492 1.17804 1.22446 1.21893 1.22329 0.99098 0.90983 0.92952 1.21631 1.04463 1.04871 1.03765 1.96508 1.95869 1.43871 1.59378 1.23713 0.98053 0.92993 0.97625 1.77462 1.03469 1.23322 1.06516 0.93352 0.92350 0.88741 0.96452 0.96751 0.91967 0.80601 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.65 37.16 0.32 -2.16 15 2 C 0.16 3.13 3.35 -67.93 -0.23 2.90 15 3 H 0.10 1.99 8.14 -51.93 -0.42 1.57 15 4 C 0.01 0.15 4.08 -27.88 -0.11 0.03 15 5 C -0.60 -16.04 8.41 -34.44 -0.29 -16.33 15 6 H 0.06 1.42 7.06 -52.49 -0.37 1.05 15 7 C 0.02 0.54 5.46 -17.82 -0.10 0.44 15 8 N -0.91 -27.02 13.65 55.43 0.76 -26.26 15 9 Si 1.07 24.23 29.90 -169.99 -5.08 19.14 15 10 H -0.29 -6.19 7.11 56.52 0.40 -5.78 15 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 12 H -0.29 -6.13 7.11 56.52 0.40 -5.73 15 13 N -0.34 -6.36 3.53 -54.83 -0.19 -6.55 15 14 C 0.10 1.64 10.56 -17.18 -0.18 1.45 15 15 C -0.26 -3.99 6.53 -39.98 -0.26 -4.25 15 16 Br -0.04 -0.50 34.08 -68.01 -2.32 -2.82 15 17 C 0.06 1.01 12.01 -17.34 -0.21 0.80 15 18 N -0.29 -5.47 12.57 30.64 0.39 -5.09 15 19 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 20 H 0.06 0.91 7.16 -51.93 -0.37 0.54 15 21 H 0.09 1.63 6.95 -51.93 -0.36 1.27 15 22 H 0.02 0.47 8.00 -51.93 -0.42 0.06 15 23 H 0.01 0.36 8.01 -51.93 -0.42 -0.05 15 24 H 0.27 8.11 7.22 -40.82 -0.29 7.81 15 25 H 0.18 2.50 7.26 -52.49 -0.38 2.12 15 26 H 0.18 2.30 8.06 -52.49 -0.42 1.88 15 LS Contribution 250.10 15.07 3.77 3.77 Total: -1.00 -29.52 250.10 -6.42 -35.93 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -2.67 Total: -1.04 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -1.06 Total: -17.10 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.95 Total: -37.90 kcal Atomic # 14 Polarization: 24.23 SS G_CDS: -5.08 Total: 19.14 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.32 Total: -2.82 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.52 -6.42 -35.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695787494.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.993 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds