Wall clock time and date at job start Mon Mar 30 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46498 * 109.47347 * 120.00262 * 2 1 3 14 14 C 1.34955 * 126.02642 * 34.71144 * 13 2 1 15 15 C 1.35305 * 107.76154 * 179.90077 * 14 13 2 16 16 C 1.39943 * 107.91204 * 0.36140 * 15 14 13 17 17 Br 1.89101 * 125.91326 * 179.80767 * 16 15 14 18 18 N 1.30895 * 108.18394 * 359.77587 * 16 15 14 19 19 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 20 20 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 21 21 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 23 23 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 24 24 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 25 25 H 1.08004 * 126.11865 * 0.02562 * 14 13 2 26 26 H 1.08001 * 126.04390 * 180.13777 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 7 2.0184 -0.6906 1.1961 14 6 1.4371 -1.7526 1.7924 15 6 2.1953 -2.0925 2.8603 16 6 3.2732 -1.2023 2.9237 17 35 4.6454 -1.2128 4.2248 18 7 3.1677 -0.3615 1.9261 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0275 0.0005 22 1 1.6053 -1.7198 -1.2952 23 1 3.1262 -0.7995 -1.2056 24 1 2.9362 -2.0177 -3.0611 25 1 0.5302 -2.2446 1.4731 26 1 2.0008 -2.9048 3.5450 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695788068.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:49 Heat of formation + Delta-G solvation = 61.608484 kcal Electronic energy + Delta-G solvation = -11902.552819 eV Core-core repulsion = 9642.791630 eV Total energy + Delta-G solvation = -2259.761189 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.97806 -35.71432 -32.89259 -31.38628 -29.92880 -28.82200 -26.90064 -23.89261 -22.02171 -20.53937 -19.60764 -17.04700 -16.61879 -14.80627 -14.44330 -13.95864 -13.76525 -13.39169 -12.74294 -12.65363 -12.07849 -11.75830 -11.44583 -11.09638 -10.97459 -10.82660 -10.35382 -10.23375 -10.12943 -10.07399 -9.00536 -8.82448 -8.48464 -8.28105 -6.51699 -4.24256 1.37246 2.09298 2.77967 3.10671 3.35623 3.39570 3.54792 4.43221 4.88097 5.15000 5.26719 5.51825 5.62267 5.76200 5.78405 5.97178 6.18938 6.34663 6.49848 6.53281 7.03777 7.13633 7.34783 7.80826 7.94310 8.26069 8.68298 9.48840 10.88585 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.048070 B = 0.004890 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.343847 B = 5724.300425 C = 6001.981703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.157 3.843 3 H 0.096 0.904 4 C 0.006 3.994 5 C -0.605 4.605 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.906 5.906 9 Si 1.073 2.927 10 H -0.286 1.286 11 H -0.287 1.287 12 H -0.283 1.283 13 N -0.332 5.332 14 C 0.066 3.934 15 C -0.260 4.260 16 C 0.056 3.944 17 Br 0.013 6.987 18 N -0.264 5.264 19 H 0.047 0.953 20 H 0.094 0.906 21 H 0.058 0.942 22 H 0.015 0.985 23 H 0.017 0.983 24 H 0.270 0.730 25 H 0.177 0.823 26 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -0.521 15.197 15.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.057 3.943 3 H 0.114 0.886 4 C -0.032 4.032 5 C -0.643 4.643 6 H 0.074 0.926 7 C -0.186 4.186 8 N -0.541 5.541 9 Si 0.901 3.099 10 H -0.213 1.213 11 H -0.213 1.213 12 H -0.209 1.209 13 N -0.115 5.115 14 C -0.083 4.083 15 C -0.291 4.291 16 C -0.187 4.187 17 Br 0.094 6.906 18 N -0.090 5.090 19 H 0.066 0.934 20 H 0.112 0.888 21 H 0.077 0.923 22 H 0.033 0.967 23 H 0.035 0.965 24 H 0.080 0.920 25 H 0.194 0.806 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.193 0.577 13.296 13.309 hybrid contribution -0.699 -0.796 1.797 2.086 sum -0.892 -0.219 15.093 15.121 Atomic orbital electron populations 1.22073 0.93145 1.02625 1.02731 1.21829 0.94448 0.97273 0.80731 0.88575 1.19635 0.96699 0.95976 0.90878 1.21857 1.40195 1.10695 0.91560 0.92598 1.25888 0.94210 0.97008 1.01450 1.70752 1.34798 1.14751 1.33773 0.83474 0.76461 0.74895 0.75056 1.21298 1.21307 1.20858 1.49495 1.17008 1.23184 1.21793 1.22533 0.99960 0.91489 0.94296 1.21200 0.97833 1.06048 1.04033 1.23663 0.97536 0.99779 0.97696 1.96636 1.46933 1.98623 1.48372 1.77461 1.03673 1.22399 1.05446 0.93375 0.88782 0.92300 0.96719 0.96483 0.91972 0.80607 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.64 37.16 0.32 -2.12 15 2 C 0.16 3.14 3.35 -67.93 -0.23 2.92 15 3 H 0.10 2.00 8.14 -51.93 -0.42 1.58 15 4 C 0.01 0.15 4.08 -27.88 -0.11 0.04 15 5 C -0.60 -16.10 8.41 -34.44 -0.29 -16.39 15 6 H 0.06 1.43 7.06 -52.49 -0.37 1.05 15 7 C 0.02 0.54 5.46 -17.82 -0.10 0.44 15 8 N -0.91 -27.10 13.65 55.43 0.76 -26.35 15 9 Si 1.07 24.30 29.90 -169.99 -5.08 19.22 15 10 H -0.29 -6.20 7.11 56.52 0.40 -5.79 15 11 H -0.29 -6.15 7.11 56.52 0.40 -5.75 15 12 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 13 N -0.33 -6.38 3.53 -54.87 -0.19 -6.58 15 14 C 0.07 1.06 10.59 -17.22 -0.18 0.88 15 15 C -0.26 -4.03 10.78 -39.99 -0.43 -4.46 15 16 C 0.06 0.98 7.71 -17.31 -0.13 0.85 15 17 Br 0.01 0.18 34.11 -68.01 -2.32 -2.14 15 18 N -0.26 -5.34 12.58 31.92 0.40 -4.94 15 19 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 20 H 0.09 1.62 6.95 -51.93 -0.36 1.26 15 21 H 0.06 0.90 7.15 -51.93 -0.37 0.53 15 22 H 0.01 0.37 8.01 -51.93 -0.42 -0.04 15 23 H 0.02 0.47 8.00 -51.93 -0.42 0.05 15 24 H 0.27 8.13 7.22 -40.82 -0.29 7.83 15 25 H 0.18 2.27 7.25 -52.48 -0.38 1.89 15 26 H 0.15 1.87 8.06 -52.49 -0.42 1.44 15 LS Contribution 250.10 15.07 3.77 3.77 Total: -1.00 -30.10 250.10 -6.50 -36.60 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -2.67 Total: -1.75 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -1.15 Total: -17.85 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.96 Total: -37.86 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.22 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -2.32 Total: -2.14 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.10 -6.50 -36.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788068.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.206 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds