Wall clock time and date at job start Mon Mar 30 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46498 * 109.47347 * 120.00262 * 2 1 3 14 14 C 1.34955 * 126.02642 * 34.71144 * 13 2 1 15 15 C 1.35305 * 107.76154 * 179.90077 * 14 13 2 16 16 C 1.39943 * 107.91204 * 0.36140 * 15 14 13 17 17 Br 1.89101 * 125.91326 * 179.80767 * 16 15 14 18 18 N 1.30895 * 108.18394 * 359.77587 * 16 15 14 19 19 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 20 20 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 21 21 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 23 23 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 24 24 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 25 25 H 1.08004 * 126.11865 * 0.02562 * 14 13 2 26 26 H 1.08001 * 126.04390 * 180.13777 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 7 2.0184 -0.6906 1.1961 14 6 1.4371 -1.7526 1.7924 15 6 2.1953 -2.0925 2.8603 16 6 3.2732 -1.2023 2.9237 17 35 4.6454 -1.2128 4.2248 18 7 3.1677 -0.3615 1.9261 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3634 -1.0275 0.0005 22 1 1.6053 -1.7198 -1.2952 23 1 3.1262 -0.7995 -1.2056 24 1 2.9362 -2.0177 -3.0611 25 1 0.5302 -2.2446 1.4731 26 1 2.0008 -2.9048 3.5450 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695788068.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:49 Heat of formation + Delta-G solvation = 43.128703 kcal Electronic energy + Delta-G solvation = -11903.354162 eV Core-core repulsion = 9642.791630 eV Total energy + Delta-G solvation = -2260.562533 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.32964 -37.39726 -34.80172 -32.74725 -31.25451 -30.30398 -28.61620 -25.74741 -23.66100 -21.88427 -21.06512 -19.00671 -18.13587 -16.30890 -15.87487 -15.63479 -15.50397 -14.75845 -14.37822 -14.04164 -13.84787 -13.27863 -13.06126 -12.64221 -12.50019 -12.27174 -11.98131 -11.95055 -11.69483 -11.35665 -10.88614 -10.60480 -10.34210 -9.65385 -8.73534 -6.46411 0.08677 0.73603 1.52331 1.53934 1.62803 1.73012 1.79509 2.55669 3.12109 3.53396 3.87065 4.01849 4.21968 4.30470 4.55821 4.71330 4.74963 4.83161 5.03398 5.08536 5.22473 5.32380 5.76441 6.04156 6.10213 6.44846 6.46371 7.36519 8.66565 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.048070 B = 0.004890 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.343847 B = 5724.300425 C = 6001.981703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.167 3.833 3 H 0.082 0.918 4 C 0.015 3.985 5 C -0.608 4.608 6 H 0.068 0.932 7 C -0.036 4.036 8 N -0.937 5.937 9 Si 1.121 2.879 10 H -0.267 1.267 11 H -0.266 1.266 12 H -0.289 1.289 13 N -0.351 5.351 14 C 0.065 3.935 15 C -0.255 4.255 16 C 0.047 3.953 17 Br 0.040 6.960 18 N -0.314 5.314 19 H 0.074 0.926 20 H 0.087 0.913 21 H 0.071 0.929 22 H 0.002 0.998 23 H -0.026 1.026 24 H 0.253 0.747 25 H 0.209 0.791 26 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.765 -0.293 15.996 16.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 H 0.100 0.900 4 C -0.023 4.023 5 C -0.646 4.646 6 H 0.086 0.914 7 C -0.234 4.234 8 N -0.574 5.574 9 Si 0.942 3.058 10 H -0.192 1.192 11 H -0.190 1.190 12 H -0.215 1.215 13 N -0.134 5.134 14 C -0.082 4.082 15 C -0.286 4.286 16 C -0.196 4.196 17 Br 0.121 6.879 18 N -0.140 5.140 19 H 0.093 0.907 20 H 0.106 0.894 21 H 0.090 0.910 22 H 0.020 0.980 23 H -0.008 1.008 24 H 0.062 0.938 25 H 0.226 0.774 26 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.712 0.804 14.135 14.261 hybrid contribution -0.150 -0.913 1.687 1.924 sum -1.862 -0.109 15.822 15.932 Atomic orbital electron populations 1.21996 0.90003 1.03832 1.03699 1.21490 0.96652 0.95723 0.79487 0.89986 1.19457 0.93898 0.95782 0.93209 1.22270 1.39152 1.10908 0.92240 0.91376 1.27465 0.93559 0.97049 1.05329 1.70898 1.37231 1.16357 1.32898 0.82880 0.76752 0.74744 0.71406 1.19204 1.19029 1.21527 1.49345 1.17560 1.24543 1.21987 1.23200 1.00803 0.90312 0.93909 1.21656 0.96644 1.06131 1.04142 1.24221 0.98575 0.99361 0.97404 1.96649 1.45893 1.98541 1.46785 1.77397 1.04901 1.24564 1.07089 0.90667 0.89445 0.90976 0.97981 1.00811 0.93784 0.77412 0.79826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 8.64 71.98 0.62 -3.63 15 2 C 0.17 6.68 3.35 44.99 0.15 6.83 15 3 H 0.08 3.45 8.14 -2.39 -0.02 3.44 15 4 C 0.01 0.74 4.08 29.85 0.12 0.86 15 5 C -0.61 -32.50 8.41 25.60 0.22 -32.28 15 6 H 0.07 3.41 7.06 -2.91 -0.02 3.39 15 7 C -0.04 -2.03 5.46 84.65 0.46 -1.57 15 8 N -0.94 -57.42 13.65 21.45 0.29 -57.12 15 9 Si 1.12 48.21 29.90 68.60 2.05 50.26 15 10 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 11 H -0.27 -10.41 7.11 99.48 0.71 -9.71 15 12 H -0.29 -12.67 7.11 99.48 0.71 -11.96 15 13 N -0.35 -13.32 3.53 -327.50 -1.16 -14.48 15 14 C 0.07 1.97 10.59 83.54 0.88 2.85 15 15 C -0.26 -7.32 10.78 22.01 0.24 -7.08 15 16 C 0.05 1.59 7.71 85.25 0.66 2.25 15 17 Br 0.04 1.07 34.11 -20.37 -0.69 0.38 15 18 N -0.31 -12.69 12.58 -52.94 -0.67 -13.36 15 19 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 20 H 0.09 2.83 6.95 -2.39 -0.02 2.82 15 21 H 0.07 2.03 7.15 -2.39 -0.02 2.01 15 22 H 0.00 0.10 8.01 -2.39 -0.02 0.08 15 23 H -0.03 -1.55 8.00 -2.39 -0.02 -1.57 15 24 H 0.25 15.90 7.22 -92.71 -0.67 15.23 15 25 H 0.21 4.69 7.25 -2.91 -0.02 4.67 15 26 H 0.18 3.89 8.06 -2.91 -0.02 3.87 15 Total: -1.00 -66.23 250.10 4.45 -61.78 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.28 Total: 4.31 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 3.35 Total: -31.77 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -1.53 Total: -84.96 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.05 Total: 50.26 kcal Atomic # 35 Polarization: 1.07 SS G_CDS: -0.69 Total: 0.38 kcal Total: -66.23 4.45 -61.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788068.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.907 kcal (2) G-P(sol) polarization free energy of solvation -66.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds