Wall clock time and date at job start Mon Mar 30 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.46865 * 2 1 4 4 C 1.52991 * 109.47543 * 120.00528 * 2 1 3 5 5 C 1.50703 * 109.46922 * 295.00238 * 4 2 1 6 6 H 1.08002 * 119.99991 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99914 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99636 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99976 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47340 * 90.00131 * 9 7 5 11 11 H 1.48508 * 109.47014 * 210.00179 * 9 7 5 12 12 H 1.48500 * 109.47202 * 330.00010 * 9 7 5 13 13 N 1.46503 * 109.47108 * 240.00868 * 2 1 3 14 14 C 1.34941 * 126.02793 * 324.99141 * 13 2 1 15 15 C 1.35315 * 107.76328 * 180.02562 * 14 13 2 16 16 C 1.39945 * 107.91022 * 0.02562 * 15 14 13 17 17 Br 1.89097 * 125.91006 * 179.97438 * 16 15 14 18 18 N 1.30893 * 108.17941 * 359.97438 * 16 15 14 19 19 H 1.08998 * 109.47250 * 299.99025 * 1 2 3 20 20 H 1.08996 * 109.47633 * 59.99956 * 1 2 3 21 21 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47421 * 55.00100 * 4 2 1 23 23 H 1.08996 * 109.47379 * 175.00461 * 4 2 1 24 24 H 0.97001 * 119.99414 * 179.97438 * 8 7 5 25 25 H 1.08001 * 126.12249 * 0.06167 * 14 13 2 26 26 H 1.07999 * 126.04347 * 179.73381 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 0.0569 2.4765 6 1 1.0806 0.9744 2.3757 7 6 1.9934 -0.4020 3.7282 8 7 1.6449 0.2769 4.7994 9 14 2.9638 -1.9885 3.9025 10 1 4.4172 -1.6850 3.8777 11 1 2.6165 -2.6423 5.1899 12 1 2.6291 -2.8995 2.7786 13 7 2.0183 -0.6904 -1.1963 14 6 1.4401 -1.7557 -1.7895 15 6 2.1963 -2.0930 -2.8598 16 6 3.2746 -1.2032 -2.9226 17 35 4.6475 -1.2144 -4.2228 18 7 3.1683 -0.3618 -1.9255 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6055 -1.7198 1.2950 23 1 3.1263 -0.7994 1.2054 24 1 1.8923 -0.0461 5.6799 25 1 0.5354 -2.2502 -1.4680 26 1 2.0043 -2.9081 -3.5419 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695788069.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:51 Heat of formation + Delta-G solvation = 69.130355 kcal Electronic energy + Delta-G solvation = -11922.090438 eV Core-core repulsion = 9662.655422 eV Total energy + Delta-G solvation = -2259.435016 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.00757 -35.66936 -32.67281 -31.47763 -29.95737 -29.14823 -27.59729 -23.92936 -21.65488 -20.55811 -19.46318 -17.38549 -16.22346 -15.05952 -14.44284 -14.13914 -13.78788 -13.35122 -12.85136 -12.67838 -12.29764 -11.79459 -11.31878 -11.21255 -11.05348 -10.86266 -10.32256 -10.22394 -10.15066 -9.97338 -9.43923 -9.00455 -8.69976 -8.33379 -6.21023 -4.22225 1.34920 2.06249 2.75211 3.08577 3.22209 3.29923 3.32951 4.31497 4.85988 5.10107 5.16706 5.51739 5.61374 5.75903 5.78006 5.94378 6.20163 6.30172 6.49802 6.56215 6.88890 7.01866 7.27479 7.57388 7.78387 8.29333 8.79067 9.39333 10.91102 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.005549 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.497699 B = 5045.169247 C = 5408.793054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 H 0.101 0.899 4 C -0.017 4.017 5 C -0.525 4.525 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.895 5.895 9 Si 0.877 3.123 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.333 5.333 14 C 0.066 3.934 15 C -0.260 4.260 16 C 0.056 3.944 17 Br 0.013 6.987 18 N -0.264 5.264 19 H 0.097 0.903 20 H 0.048 0.952 21 H 0.058 0.942 22 H 0.023 0.977 23 H 0.021 0.979 24 H 0.266 0.734 25 H 0.178 0.822 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 -5.071 -17.271 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.060 3.940 3 H 0.119 0.881 4 C -0.056 4.056 5 C -0.563 4.563 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.704 3.296 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.191 1.191 13 N -0.116 5.116 14 C -0.083 4.083 15 C -0.291 4.291 16 C -0.187 4.187 17 Br 0.094 6.906 18 N -0.089 5.089 19 H 0.116 0.884 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.040 0.960 24 H 0.076 0.924 25 H 0.195 0.805 26 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.320 -3.978 -16.815 17.434 hybrid contribution -0.076 -1.549 0.186 1.562 sum 2.244 -5.527 -16.629 17.667 Atomic orbital electron populations 1.22096 0.92874 1.02700 1.03095 1.21756 0.94650 0.97358 0.80265 0.88102 1.19991 0.96940 0.96591 0.92052 1.20855 1.36983 1.09943 0.88499 0.90296 1.24929 0.95210 0.96931 0.95743 1.69885 1.46133 1.39042 0.98177 0.86819 0.80909 0.84130 0.77705 1.20076 1.21083 1.19132 1.49503 1.17116 1.23052 1.21958 1.22549 1.00014 0.91377 0.94314 1.21210 0.97902 1.06046 1.03966 1.23673 0.97532 0.99792 0.97703 1.96642 1.46823 1.98617 1.48483 1.77469 1.03568 1.22328 1.05543 0.88394 0.93265 0.92282 0.95826 0.96022 0.92392 0.80503 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.64 37.16 0.32 -2.06 15 2 C 0.16 3.03 3.35 -67.93 -0.23 2.81 15 3 H 0.10 2.00 8.14 -51.92 -0.42 1.58 15 4 C -0.02 -0.40 3.84 -27.89 -0.11 -0.50 15 5 C -0.52 -13.89 8.96 -34.44 -0.31 -14.20 15 6 H 0.08 2.19 7.30 -52.49 -0.38 1.81 15 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 15 8 N -0.89 -26.36 13.96 55.43 0.77 -25.58 15 9 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 15 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 15 13 N -0.33 -6.08 3.53 -54.87 -0.19 -6.27 15 14 C 0.07 1.01 10.59 -17.23 -0.18 0.82 15 15 C -0.26 -3.82 10.78 -39.98 -0.43 -4.25 15 16 C 0.06 0.93 7.71 -17.31 -0.13 0.80 15 17 Br 0.01 0.18 34.11 -68.01 -2.32 -2.14 15 18 N -0.26 -5.09 12.58 31.91 0.40 -4.69 15 19 H 0.10 1.69 6.95 -51.93 -0.36 1.33 15 20 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.06 0.85 7.15 -51.92 -0.37 0.48 15 22 H 0.02 0.53 7.20 -51.93 -0.37 0.16 15 23 H 0.02 0.53 7.57 -51.93 -0.39 0.13 15 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 25 H 0.18 2.10 7.26 -52.49 -0.38 1.72 15 26 H 0.15 1.76 8.06 -52.49 -0.42 1.33 15 LS Contribution 247.83 15.07 3.73 3.73 Total: -1.00 -29.60 247.83 -6.14 -35.74 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -2.70 Total: -2.71 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -1.17 Total: -14.61 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.98 Total: -36.55 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -2.32 Total: -2.14 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.60 -6.14 -35.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788069.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.868 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds