Wall clock time and date at job start Mon Mar 30 2020 06:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09011 * 109.46865 * 2 1 4 4 C 1.52991 * 109.47543 * 120.00528 * 2 1 3 5 5 C 1.50703 * 109.46922 * 295.00238 * 4 2 1 6 6 H 1.08002 * 119.99991 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99914 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99636 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99976 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47340 * 90.00131 * 9 7 5 11 11 H 1.48508 * 109.47014 * 210.00179 * 9 7 5 12 12 H 1.48500 * 109.47202 * 330.00010 * 9 7 5 13 13 N 1.46503 * 109.47108 * 240.00868 * 2 1 3 14 14 C 1.34941 * 126.02793 * 324.99141 * 13 2 1 15 15 C 1.35315 * 107.76328 * 180.02562 * 14 13 2 16 16 C 1.39945 * 107.91022 * 0.02562 * 15 14 13 17 17 Br 1.89097 * 125.91006 * 179.97438 * 16 15 14 18 18 N 1.30893 * 108.17941 * 359.97438 * 16 15 14 19 19 H 1.08998 * 109.47250 * 299.99025 * 1 2 3 20 20 H 1.08996 * 109.47633 * 59.99956 * 1 2 3 21 21 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47421 * 55.00100 * 4 2 1 23 23 H 1.08996 * 109.47379 * 175.00461 * 4 2 1 24 24 H 0.97001 * 119.99414 * 179.97438 * 8 7 5 25 25 H 1.08001 * 126.12249 * 0.06167 * 14 13 2 26 26 H 1.07999 * 126.04347 * 179.73381 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6413 0.0569 2.4765 6 1 1.0806 0.9744 2.3757 7 6 1.9934 -0.4020 3.7282 8 7 1.6449 0.2769 4.7994 9 14 2.9638 -1.9885 3.9025 10 1 4.4172 -1.6850 3.8777 11 1 2.6165 -2.6423 5.1899 12 1 2.6291 -2.8995 2.7786 13 7 2.0183 -0.6904 -1.1963 14 6 1.4401 -1.7557 -1.7895 15 6 2.1963 -2.0930 -2.8598 16 6 3.2746 -1.2032 -2.9226 17 35 4.6475 -1.2144 -4.2228 18 7 3.1683 -0.3618 -1.9255 19 1 -0.3633 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6055 -1.7198 1.2950 23 1 3.1263 -0.7994 1.2054 24 1 1.8923 -0.0461 5.6799 25 1 0.5354 -2.2502 -1.4680 26 1 2.0043 -2.9081 -3.5419 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695788069.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:50 Heat of formation + Delta-G solvation = 50.717144 kcal Electronic energy + Delta-G solvation = -11922.888895 eV Core-core repulsion = 9662.655422 eV Total energy + Delta-G solvation = -2260.233473 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 258.006 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.26564 -37.22760 -34.61172 -32.79717 -31.19184 -30.66599 -29.11935 -25.58367 -23.23163 -21.81689 -20.85603 -19.24182 -17.73261 -16.70122 -15.92638 -15.73299 -15.26367 -14.67502 -14.56693 -14.00867 -13.86321 -13.25206 -13.02608 -12.71081 -12.53891 -12.21424 -11.95035 -11.84243 -11.69479 -11.45774 -11.29848 -10.83072 -10.28285 -9.59377 -8.34416 -6.39030 0.14924 0.80273 1.31069 1.33799 1.42756 1.59495 1.78565 2.29806 3.00659 3.60742 3.94590 4.07959 4.29884 4.37703 4.63505 4.78086 4.81670 4.88717 5.07965 5.15477 5.30344 5.36608 5.51491 6.04594 6.19292 6.51611 6.67152 7.25450 8.80785 Molecular weight = 258.01amu Principal moments of inertia in cm(-1) A = 0.037906 B = 0.005549 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.497699 B = 5045.169247 C = 5408.793054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.168 3.832 3 H 0.081 0.919 4 C -0.010 4.010 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.018 3.982 8 N -0.940 5.940 9 Si 0.937 3.063 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.251 1.251 13 N -0.351 5.351 14 C 0.068 3.932 15 C -0.255 4.255 16 C 0.047 3.953 17 Br 0.037 6.963 18 N -0.313 5.313 19 H 0.078 0.922 20 H 0.072 0.928 21 H 0.079 0.921 22 H 0.033 0.967 23 H 0.003 0.997 24 H 0.268 0.732 25 H 0.213 0.787 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 -7.043 -18.947 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.067 3.933 3 H 0.099 0.901 4 C -0.048 4.048 5 C -0.560 4.560 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.580 5.580 9 Si 0.762 3.238 10 H -0.204 1.204 11 H -0.204 1.204 12 H -0.174 1.174 13 N -0.134 5.134 14 C -0.080 4.080 15 C -0.286 4.286 16 C -0.196 4.196 17 Br 0.118 6.882 18 N -0.138 5.138 19 H 0.097 0.903 20 H 0.090 0.910 21 H 0.098 0.902 22 H 0.051 0.949 23 H 0.021 0.979 24 H 0.077 0.923 25 H 0.229 0.771 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.034 -5.959 -18.521 19.562 hybrid contribution 0.039 -0.896 0.596 1.077 sum 2.073 -6.855 -17.925 19.303 Atomic orbital electron populations 1.22005 0.90379 1.04132 1.03288 1.21403 0.96420 0.95877 0.79571 0.90050 1.19834 0.95768 0.96788 0.92439 1.21129 1.35631 1.09222 0.90050 0.92838 1.25754 0.96442 1.00256 0.95586 1.70011 1.48084 1.41091 0.98797 0.85858 0.79073 0.80578 0.78317 1.20352 1.20417 1.17448 1.49313 1.17653 1.24342 1.22072 1.23235 1.00792 0.90095 0.93832 1.21651 0.96722 1.06129 1.04114 1.24202 0.98540 0.99446 0.97408 1.96657 1.45942 1.98540 1.47089 1.77418 1.04856 1.24364 1.07182 0.90275 0.90952 0.90195 0.94916 0.97856 0.92277 0.77067 0.79977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.64 71.98 0.62 -3.59 15 2 C 0.17 6.28 3.35 44.99 0.15 6.43 15 3 H 0.08 3.30 8.14 -2.38 -0.02 3.28 15 4 C -0.01 -0.44 3.84 29.85 0.11 -0.33 15 5 C -0.52 -28.00 8.96 25.60 0.23 -27.77 15 6 H 0.05 3.07 7.30 -2.91 -0.02 3.05 15 7 C 0.02 1.01 5.47 84.66 0.46 1.48 15 8 N -0.94 -56.44 13.96 21.45 0.30 -56.14 15 9 Si 0.94 43.43 27.47 68.60 1.88 45.31 15 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 15 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 12 H -0.25 -10.86 6.54 99.48 0.65 -10.21 15 13 N -0.35 -12.19 3.53 -327.50 -1.15 -13.35 15 14 C 0.07 1.83 10.59 83.54 0.88 2.71 15 15 C -0.26 -6.64 10.78 22.01 0.24 -6.40 15 16 C 0.05 1.47 7.71 85.25 0.66 2.13 15 17 Br 0.04 0.92 34.11 -20.37 -0.69 0.22 15 18 N -0.31 -11.76 12.58 -52.94 -0.67 -12.42 15 19 H 0.08 2.70 6.95 -2.39 -0.02 2.68 15 20 H 0.07 1.84 8.14 -2.39 -0.02 1.82 15 21 H 0.08 2.05 7.15 -2.38 -0.02 2.03 15 22 H 0.03 1.41 7.20 -2.39 -0.02 1.39 15 23 H 0.00 0.15 7.57 -2.39 -0.02 0.13 15 24 H 0.27 15.10 8.31 -92.71 -0.77 14.33 15 25 H 0.21 4.00 7.26 -2.91 -0.02 3.98 15 26 H 0.18 3.43 8.06 -2.91 -0.02 3.41 15 Total: -1.00 -64.00 247.83 4.15 -59.85 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: 1.12 Total: 1.88 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 3.36 Total: -25.35 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -1.52 Total: -81.91 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.88 Total: 45.31 kcal Atomic # 35 Polarization: 0.92 SS G_CDS: -0.69 Total: 0.22 kcal Total: -64.00 4.15 -59.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695788069.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.566 kcal (2) G-P(sol) polarization free energy of solvation -63.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds