Wall clock time and date at job start Mon Mar 30 2020 06:54:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35698 * 116.99730 * 2 1
4 4 C 1.39033 * 119.90281 * 359.97438 * 3 2 1
5 5 C 1.37779 * 120.10465 * 180.02562 * 4 3 2
6 6 Cl 1.73604 * 120.04523 * 179.97438 * 5 4 3
7 7 C 1.40135 * 119.90987 * 359.97438 * 5 4 3
8 8 C 1.47491 * 120.09724 * 179.97438 * 7 5 4
9 9 O 1.21835 * 120.00316 * 0.02562 * 8 7 5
10 10 C 1.41737 * 119.99998 * 180.02562 * 8 7 5
11 11 H 1.08002 * 120.00065 * 0.02562 * 10 8 7
12 12 C 1.40341 * 120.00112 * 180.02562 * 10 8 7
13 13 N 1.30540 * 119.99886 * 0.02562 * 12 10 8
14 14 Si 1.86803 * 120.00498 * 180.02562 * 12 10 8
15 15 H 1.48498 * 109.46889 * 59.99717 * 14 12 10
16 16 H 1.48496 * 109.47615 * 179.97438 * 14 12 10
17 17 H 1.48508 * 109.46816 * 300.00275 * 14 12 10
18 18 C 1.39959 * 119.80730 * 0.02562 * 7 5 4
19 19 C 1.37727 * 119.89164 * 359.74248 * 18 7 5
20 20 F 1.35105 * 119.95404 * 180.27370 * 19 18 7
21 21 H 1.09002 * 109.47382 * 59.99993 * 1 2 3
22 22 H 1.09001 * 109.46938 * 299.99979 * 1 2 3
23 23 H 1.09004 * 109.46926 * 180.02562 * 1 2 3
24 24 H 1.07997 * 119.95136 * 359.97438 * 4 3 2
25 25 H 0.97003 * 119.99734 * 179.97438 * 13 12 10
26 26 H 1.08002 * 120.05001 * 179.97438 * 18 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0450 1.2091 0.0000
4 6 1.2858 2.3738 -0.0005
5 6 1.9069 3.6037 -0.0011
6 17 0.9573 5.0570 -0.0024
7 6 3.3062 3.6798 -0.0005
8 6 3.9754 4.9941 -0.0017
9 8 3.3116 6.0158 -0.0026
10 6 5.3908 5.0688 -0.0017
11 1 5.9793 4.1632 -0.0013
12 6 6.0276 6.3194 -0.0022
13 7 5.3163 7.4140 -0.0022
14 14 7.8930 6.4178 -0.0029
15 1 8.4237 5.7445 -1.2154
16 1 8.3136 7.8420 -0.0041
17 1 8.4246 5.7450 1.2096
18 6 4.0668 2.5050 0.0000
19 6 3.4376 1.2799 0.0054
20 9 4.1706 0.1450 0.0115
21 1 -0.3634 0.5138 -0.8900
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 0.2074 2.3145 -0.0014
25 1 5.7564 8.2784 -0.0022
26 1 5.1455 2.5591 0.0000
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000705929830.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:54:28
Heat of formation + Delta-G solvation = -97.791403 kcal
Electronic energy + Delta-G solvation = -16579.462112 eV
Core-core repulsion = 13371.463455 eV
Total energy + Delta-G solvation = -3207.998657 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 258.025 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-48.43255 -39.75536 -37.78932 -35.90339 -35.44504 -32.72922 -30.52442 -29.75605
-27.37962 -26.67367 -22.93321 -22.24819 -19.97099 -18.15318 -17.26872 -16.31346
-15.99114 -15.97205 -15.39973 -14.83283 -14.71830 -14.10810 -13.93636 -13.07477
-12.95297 -12.83419 -12.34777 -11.81761 -11.66461 -11.41788 -11.40762 -11.07637
-10.95840 -10.45450 -10.33961 -10.14781 -10.14652 -9.01509 -8.45391 -7.66541
-7.41069 -6.33896 -4.96663 1.36750 1.44261 2.79953 3.04028 3.10572
3.12247 3.25322 3.62088 3.96542 4.45593 4.50032 4.96608 5.09302
5.11140 5.38151 5.40563 5.50422 5.68472 5.84519 6.05522 6.14307
6.60721 6.72064 6.93668 7.16775 7.42085 7.93747 8.70668 8.72764
10.23737 10.44863
Molecular weight = 258.02amu
Principal moments of inertia in cm(-1)
A = 0.024989 B = 0.007238 C = 0.005630
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1120.240856 B = 3867.449559 C = 4972.541577
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.310 6.310
3 C 0.091 3.909
4 C -0.190 4.190
5 C 0.012 3.988
6 Cl -0.033 7.033
7 C -0.102 4.102
8 C 0.383 3.617
9 O -0.513 6.513
10 C -0.513 4.513
11 H 0.073 0.927
12 C 0.080 3.920
13 N -0.730 5.730
14 Si 0.906 3.094
15 H -0.264 1.264
16 H -0.278 1.278
17 H -0.264 1.264
18 C -0.081 4.081
19 C 0.057 3.943
20 F -0.137 7.137
21 H 0.056 0.944
22 H 0.056 0.944
23 H 0.099 0.901
24 H 0.140 0.860
25 H 0.276 0.724
26 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.783 -9.782 0.004 11.364
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.224 6.224
3 C 0.045 3.955
4 C -0.209 4.209
5 C -0.016 4.016
6 Cl -0.004 7.004
7 C -0.104 4.104
8 C 0.277 3.723
9 O -0.401 6.401
10 C -0.544 4.544
11 H 0.091 0.909
12 C -0.143 4.143
13 N -0.359 5.359
14 Si 0.730 3.270
15 H -0.189 1.189
16 H -0.202 1.202
17 H -0.188 1.188
18 C -0.101 4.101
19 C 0.037 3.963
20 F -0.116 7.116
21 H 0.075 0.925
22 H 0.075 0.925
23 H 0.118 0.882
24 H 0.157 0.843
25 H 0.087 0.913
26 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges -6.156 -9.205 0.004 11.074
hybrid contribution 0.701 -0.153 0.000 0.717
sum -5.455 -9.358 0.003 10.832
Atomic orbital electron populations
1.23078 0.78393 1.03803 1.01602 1.86045 1.21380 1.25870 1.89062
1.18879 0.90539 0.84818 1.01281 1.20835 1.00099 0.90049 1.09964
1.20942 0.92129 0.87742 1.00758 1.98378 1.70330 1.35540 1.96102
1.21743 0.91270 0.99343 0.98039 1.17911 0.89395 0.84368 0.80605
1.90619 1.66845 1.34828 1.47791 1.20856 0.93115 0.93232 1.47231
0.90864 1.25955 1.00298 0.95289 0.92806 1.69941 1.37303 0.98517
1.30093 0.86423 0.82484 0.78127 0.79940 1.18851 1.20243 1.18845
1.21412 1.01868 0.88559 0.98212 1.17020 0.85710 0.82981 1.10544
1.91460 1.76695 1.48877 1.94554 0.92499 0.92507 0.88244 0.84268
0.91320 0.82478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 9.81 101.05 0.99 1.26 15
2 O -0.31 -4.68 10.35 -18.80 -0.19 -4.88 15
3 C 0.09 1.56 6.71 -38.84 -0.26 1.30 15
4 C -0.19 -3.22 8.79 -39.45 -0.35 -3.56 15
5 C 0.01 0.25 6.35 -39.04 -0.25 0.00 15
6 Cl -0.03 -0.69 26.01 -51.86 -1.35 -2.04 15
7 C -0.10 -2.30 5.89 -104.77 -0.62 -2.92 15
8 C 0.38 10.34 6.90 -34.48 -0.24 10.10 15
9 O -0.51 -15.24 12.50 5.07 0.06 -15.17 15
10 C -0.51 -13.50 8.85 -37.46 -0.33 -13.83 15
11 H 0.07 1.73 6.01 -52.49 -0.32 1.42 15
12 C 0.08 2.08 5.50 -17.31 -0.10 1.99 15
13 N -0.73 -20.25 11.73 55.57 0.65 -19.59 15
14 Si 0.91 18.72 29.56 -169.99 -5.03 13.69 15
15 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15
16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 15
17 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15
18 C -0.08 -1.62 9.40 -39.12 -0.37 -1.99 15
19 C 0.06 1.06 7.30 -39.32 -0.29 0.77 15
20 F -0.14 -2.48 17.11 2.25 0.04 -2.44 15
21 H 0.06 0.52 7.65 -51.93 -0.40 0.13 15
22 H 0.06 0.52 7.65 -51.93 -0.40 0.13 15
23 H 0.10 0.74 8.14 -51.93 -0.42 0.31 15
24 H 0.14 1.92 6.27 -52.49 -0.33 1.59 15
25 H 0.28 6.90 8.29 -40.82 -0.34 6.56 15
26 H 0.16 2.96 6.19 -52.49 -0.33 2.64 15
LS Contribution 254.30 15.07 3.83 3.83
Total: -1.00 -30.66 254.30 -5.10 -35.77
By element:
Atomic # 1 Polarization: -0.97 SS G_CDS: -1.32 Total: -2.29 kcal
Atomic # 6 Polarization: -5.08 SS G_CDS: -1.80 Total: -6.88 kcal
Atomic # 7 Polarization: -20.25 SS G_CDS: 0.65 Total: -19.59 kcal
Atomic # 8 Polarization: -19.92 SS G_CDS: -0.13 Total: -20.05 kcal
Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal
Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal
Atomic # 17 Polarization: -0.69 SS G_CDS: -1.35 Total: -2.04 kcal
Total LS contribution 3.83 Total: 3.83 kcal
Total: -30.66 -5.10 -35.77 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000705929830.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.026 kcal
(2) G-P(sol) polarization free energy of solvation -30.661 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.687 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.791 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds