Wall clock time and date at job start Mon Mar 30 2020 06:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35698 * 116.99730 * 2 1 4 4 C 1.39033 * 119.90281 * 359.97438 * 3 2 1 5 5 C 1.37779 * 120.10465 * 180.02562 * 4 3 2 6 6 Cl 1.73604 * 120.04523 * 179.97438 * 5 4 3 7 7 C 1.40135 * 119.90987 * 359.97438 * 5 4 3 8 8 C 1.47491 * 120.09724 * 179.97438 * 7 5 4 9 9 O 1.21835 * 120.00316 * 0.02562 * 8 7 5 10 10 C 1.41737 * 119.99998 * 180.02562 * 8 7 5 11 11 H 1.08002 * 120.00065 * 0.02562 * 10 8 7 12 12 C 1.40341 * 120.00112 * 180.02562 * 10 8 7 13 13 N 1.30540 * 119.99886 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00498 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46889 * 59.99717 * 14 12 10 16 16 H 1.48496 * 109.47615 * 179.97438 * 14 12 10 17 17 H 1.48508 * 109.46816 * 300.00275 * 14 12 10 18 18 C 1.39959 * 119.80730 * 0.02562 * 7 5 4 19 19 C 1.37727 * 119.89164 * 359.74248 * 18 7 5 20 20 F 1.35105 * 119.95404 * 180.27370 * 19 18 7 21 21 H 1.09002 * 109.47382 * 59.99993 * 1 2 3 22 22 H 1.09001 * 109.46938 * 299.99979 * 1 2 3 23 23 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 24 24 H 1.07997 * 119.95136 * 359.97438 * 4 3 2 25 25 H 0.97003 * 119.99734 * 179.97438 * 13 12 10 26 26 H 1.08002 * 120.05001 * 179.97438 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2858 2.3738 -0.0005 5 6 1.9069 3.6037 -0.0011 6 17 0.9573 5.0570 -0.0024 7 6 3.3062 3.6798 -0.0005 8 6 3.9754 4.9941 -0.0017 9 8 3.3116 6.0158 -0.0026 10 6 5.3908 5.0688 -0.0017 11 1 5.9793 4.1632 -0.0013 12 6 6.0276 6.3194 -0.0022 13 7 5.3163 7.4140 -0.0022 14 14 7.8930 6.4178 -0.0029 15 1 8.4237 5.7445 -1.2154 16 1 8.3136 7.8420 -0.0041 17 1 8.4246 5.7450 1.2096 18 6 4.0668 2.5050 0.0000 19 6 3.4376 1.2799 0.0054 20 9 4.1706 0.1450 0.0115 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2074 2.3145 -0.0014 25 1 5.7564 8.2784 -0.0022 26 1 5.1455 2.5591 0.0000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705929830.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:28 Heat of formation + Delta-G solvation = -116.925391 kcal Electronic energy + Delta-G solvation = -16580.291824 eV Core-core repulsion = 13371.463455 eV Total energy + Delta-G solvation = -3208.828369 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.025 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.87879 -41.10807 -39.37608 -37.68063 -37.02660 -34.71762 -32.07067 -31.20828 -28.83321 -28.17263 -24.51714 -23.71552 -21.73419 -19.48006 -18.89319 -17.84065 -17.74385 -17.22763 -17.08511 -16.16596 -16.08617 -15.57082 -15.33244 -14.87352 -14.65574 -14.30947 -13.90236 -13.46061 -13.22156 -12.83454 -12.70227 -12.60242 -12.42214 -12.24371 -12.09041 -11.77376 -11.61869 -10.93020 -9.93704 -9.39891 -9.18211 -8.27752 -7.01733 -0.18721 -0.04028 1.23385 1.41526 1.41678 1.55078 2.01519 2.09427 2.23411 2.61034 3.08398 3.63985 3.70884 3.83691 3.94555 4.32637 4.38826 4.40525 4.57033 4.72373 4.74553 4.95971 5.16904 5.23579 5.45517 5.97896 6.15451 6.73819 6.77256 8.28018 8.51455 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.024989 B = 0.007238 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.240856 B = 3867.449559 C = 4972.541577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.114 3.886 4 C -0.176 4.176 5 C 0.004 3.996 6 Cl -0.044 7.044 7 C -0.140 4.140 8 C 0.364 3.636 9 O -0.555 6.555 10 C -0.543 4.543 11 H 0.092 0.908 12 C 0.029 3.971 13 N -0.781 5.781 14 Si 0.988 3.012 15 H -0.253 1.253 16 H -0.271 1.271 17 H -0.253 1.253 18 C -0.075 4.075 19 C 0.052 3.948 20 F -0.133 7.133 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.131 0.869 24 H 0.176 0.824 25 H 0.282 0.718 26 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 -11.967 0.005 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.066 3.934 4 C -0.195 4.195 5 C -0.023 4.023 6 Cl -0.015 7.015 7 C -0.143 4.143 8 C 0.261 3.739 9 O -0.446 6.446 10 C -0.573 4.573 11 H 0.110 0.890 12 C -0.191 4.191 13 N -0.410 5.410 14 Si 0.807 3.193 15 H -0.177 1.177 16 H -0.196 1.196 17 H -0.177 1.177 18 C -0.094 4.094 19 C 0.032 3.968 20 F -0.112 7.112 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.149 0.851 24 H 0.193 0.807 25 H 0.092 0.908 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.191 -11.428 0.004 12.997 hybrid contribution 0.546 0.339 -0.001 0.642 sum -5.645 -11.089 0.004 12.444 Atomic orbital electron populations 1.23552 0.75380 1.06462 1.02871 1.86074 1.24376 1.24394 1.88173 1.18897 0.90161 0.85748 0.98557 1.21048 1.01789 0.88333 1.08373 1.21104 0.91511 0.88588 1.01124 1.98369 1.70259 1.36664 1.96193 1.21324 0.92486 0.98191 1.02262 1.18465 0.90153 0.85639 0.79600 1.90568 1.67692 1.36725 1.49585 1.21363 0.93705 0.94534 1.47712 0.88989 1.27098 1.06043 0.94483 0.91431 1.70076 1.40024 0.99443 1.31428 0.85190 0.75075 0.78468 0.80519 1.17732 1.19598 1.17718 1.21304 1.01939 0.88443 0.97754 1.16970 0.86512 0.82519 1.10846 1.91469 1.76773 1.48434 1.94543 0.91178 0.91189 0.85122 0.80692 0.90798 0.82195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 15 2 O -0.32 -8.38 10.35 -90.18 -0.93 -9.31 15 3 C 0.11 3.59 6.71 22.75 0.15 3.74 15 4 C -0.18 -5.55 8.79 22.35 0.20 -5.35 15 5 C 0.00 0.17 6.35 22.62 0.14 0.32 15 6 Cl -0.04 -1.87 26.01 -2.72 -0.07 -1.94 15 7 C -0.14 -6.45 5.89 -19.96 -0.12 -6.57 15 8 C 0.36 20.35 6.90 25.58 0.18 20.53 15 9 O -0.55 -34.37 12.50 -4.78 -0.06 -34.43 15 10 C -0.54 -29.16 8.85 23.65 0.21 -28.95 15 11 H 0.09 4.39 6.01 -2.91 -0.02 4.37 15 12 C 0.03 1.52 5.50 85.40 0.47 1.99 15 13 N -0.78 -44.71 11.73 21.89 0.26 -44.45 15 14 Si 0.99 38.42 29.56 68.60 2.03 40.45 15 15 H -0.25 -9.34 7.11 99.48 0.71 -8.63 15 16 H -0.27 -10.16 7.11 99.48 0.71 -9.45 15 17 H -0.25 -9.33 7.11 99.48 0.71 -8.63 15 18 C -0.08 -2.97 9.40 22.57 0.21 -2.76 15 19 C 0.05 1.82 7.30 22.44 0.16 1.98 15 20 F -0.13 -4.55 17.11 44.97 0.77 -3.78 15 21 H 0.07 0.97 7.65 -2.39 -0.02 0.95 15 22 H 0.07 0.96 7.65 -2.39 -0.02 0.95 15 23 H 0.13 1.29 8.14 -2.38 -0.02 1.27 15 24 H 0.18 4.16 6.27 -2.91 -0.02 4.14 15 25 H 0.28 14.53 8.29 -92.71 -0.77 13.76 15 26 H 0.16 6.02 6.19 -2.91 -0.02 6.01 15 Total: -1.00 -68.47 254.30 5.95 -62.51 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.24 Total: 4.73 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 2.72 Total: -13.78 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.26 Total: -44.45 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -0.99 Total: -43.74 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.77 Total: -3.78 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.07 Total: -1.94 kcal Total: -68.47 5.95 -62.51 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705929830.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.410 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds