Wall clock time and date at job start Mon Mar 30 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 S 1.81405 * 109.47297 * 2 1 4 4 C 1.81394 * 103.00300 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47078 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47007 * 300.96559 * 5 4 3 7 7 C 1.53002 * 109.47041 * 180.96838 * 5 4 3 8 8 N 1.46899 * 109.47204 * 60.97130 * 5 4 3 9 9 C 1.46891 * 111.00166 * 69.02748 * 8 5 4 10 10 C 1.46901 * 110.99798 * 192.97945 * 8 5 4 11 11 C 1.53005 * 109.46937 * 159.18096 * 10 8 5 12 12 C 1.50695 * 115.54981 * 280.91114 * 11 10 8 13 13 H 1.08001 * 120.00173 * 114.49587 * 12 11 10 14 14 C 1.37880 * 120.00763 * 294.49597 * 12 11 10 15 15 N 1.31508 * 120.00559 * 163.66139 * 14 12 11 16 16 Si 1.86802 * 119.99343 * 343.66461 * 14 12 11 17 17 H 1.48499 * 109.47254 * 93.49761 * 16 14 12 18 18 H 1.48503 * 109.46858 * 213.49827 * 16 14 12 19 19 H 1.48497 * 109.47131 * 333.49495 * 16 14 12 20 20 C 1.52997 * 117.49527 * 135.20851 * 11 10 8 21 21 C 1.52997 * 117.49695 * 66.58462 * 11 10 8 22 22 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47502 * 299.99978 * 1 2 3 24 24 H 1.09002 * 109.47182 * 60.00523 * 1 2 3 25 25 H 1.08999 * 109.47661 * 239.99565 * 2 1 3 26 26 H 1.09008 * 109.47310 * 119.99878 * 2 1 3 27 27 H 1.08996 * 109.47428 * 59.99504 * 4 3 2 28 28 H 1.09008 * 109.46966 * 299.99856 * 4 3 2 29 29 H 1.08993 * 109.47448 * 299.99760 * 7 5 4 30 30 H 1.09003 * 109.47201 * 60.00058 * 7 5 4 31 31 H 1.09003 * 109.47048 * 179.97438 * 7 5 4 32 32 H 1.09003 * 109.47544 * 195.15431 * 9 8 5 33 33 H 1.08994 * 109.47641 * 75.15425 * 9 8 5 34 34 H 1.08997 * 109.47405 * 315.15352 * 9 8 5 35 35 H 1.09000 * 109.47264 * 279.18362 * 10 8 5 36 36 H 1.09000 * 109.47169 * 39.18404 * 10 8 5 37 37 H 0.96996 * 119.99914 * 180.02562 * 15 14 12 38 38 H 1.08997 * 117.50375 * 359.97438 * 20 11 10 39 39 H 1.09003 * 117.49821 * 145.02603 * 20 11 10 40 40 H 1.08997 * 117.49973 * 214.97601 * 21 11 10 41 41 H 1.08995 * 117.50015 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9370 1.5059 -0.0008 5 6 4.6063 2.8817 -0.0002 6 1 4.2894 3.4402 -0.8810 7 6 6.1264 2.7094 -0.0253 8 7 4.2166 3.6153 1.2113 9 6 4.8102 3.0066 2.4092 10 6 4.5801 5.0348 1.1070 11 6 3.7380 5.8505 2.0901 12 6 2.3299 6.1515 1.6456 13 1 1.4925 5.7320 2.1834 14 6 2.1104 6.9625 0.5524 15 7 0.9325 6.9735 -0.0324 16 14 3.4863 8.0457 -0.0981 17 1 4.2102 7.3304 -1.1795 18 1 2.9123 9.3054 -0.6358 19 1 4.4299 8.3625 1.0039 20 6 4.4574 6.9111 2.9258 21 6 3.9728 5.6176 3.5839 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.2398 0.9545 -0.8909 28 1 4.2405 0.9542 0.8891 29 1 6.4433 2.1509 0.8554 30 1 6.4156 2.1650 -0.9243 31 1 6.6032 3.6896 -0.0253 32 1 4.3058 3.3863 3.2977 33 1 5.8697 3.2581 2.4576 34 1 4.6957 1.9237 2.3612 35 1 5.6368 5.1577 1.3446 36 1 4.3931 5.3841 0.0915 37 1 0.7783 7.5438 -0.8017 38 1 5.5307 7.0275 2.7756 39 1 3.9123 7.8269 3.1543 40 1 3.1089 5.6825 4.2453 41 1 4.7269 4.8830 3.8663 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707119704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:39 Heat of formation + Delta-G solvation = 33.237250 kcal Electronic energy + Delta-G solvation = -18184.773223 eV Core-core repulsion = 15613.178352 eV Total energy + Delta-G solvation = -2571.594871 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.52314 -36.02976 -32.55284 -31.96258 -31.10106 -27.63822 -27.15343 -25.30350 -23.97410 -23.00226 -21.44845 -19.44855 -18.82713 -16.24622 -15.83657 -15.74115 -14.89941 -14.63016 -14.52564 -14.25784 -13.73758 -13.36159 -13.11069 -12.75614 -12.66354 -12.38799 -12.19136 -12.01201 -11.59483 -11.35864 -11.29584 -11.20363 -10.81618 -10.65150 -10.61007 -10.39933 -10.24808 -9.93981 -9.35192 -9.25800 -8.84876 -8.50866 -8.13716 -7.52890 -7.00473 -5.93130 -3.84748 2.07571 3.10292 3.35629 3.47365 3.55683 4.36942 4.57945 4.96421 5.07249 5.13181 5.16331 5.27585 5.39713 5.46579 5.52204 5.54737 5.59275 5.80408 5.82323 5.82687 5.92343 5.96257 5.98548 6.01939 6.19653 6.24707 6.25901 6.31534 6.42215 6.43528 6.62982 6.70275 6.86433 7.24662 7.29733 7.74063 7.85236 7.99189 8.73561 9.16050 9.73277 11.19393 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.007739 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.727473 B = 3617.082581 C = 4229.371861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 S -0.182 6.182 4 C -0.085 4.085 5 C 0.092 3.908 6 H 0.089 0.911 7 C -0.179 4.179 8 N -0.499 5.499 9 C 0.020 3.980 10 C 0.095 3.905 11 C 0.019 3.981 12 C -0.462 4.462 13 H 0.075 0.925 14 C 0.080 3.920 15 N -0.890 5.890 16 Si 0.853 3.147 17 H -0.283 1.283 18 H -0.293 1.293 19 H -0.249 1.249 20 C -0.201 4.201 21 C -0.187 4.187 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.015 0.985 34 H 0.053 0.947 35 H 0.010 0.990 36 H 0.067 0.933 37 H 0.260 0.740 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.545 -12.350 0.209 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.264 4.264 3 S 0.044 5.956 4 C -0.234 4.234 5 C -0.018 4.018 6 H 0.107 0.893 7 C -0.240 4.240 8 N -0.221 5.221 9 C -0.128 4.128 10 C -0.032 4.032 11 C 0.018 3.982 12 C -0.499 4.499 13 H 0.093 0.907 14 C -0.122 4.122 15 N -0.528 5.528 16 Si 0.681 3.319 17 H -0.210 1.210 18 H -0.220 1.220 19 H -0.173 1.173 20 C -0.239 4.239 21 C -0.224 4.224 22 H 0.080 0.920 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.028 0.972 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.292 -11.375 0.103 13.000 hybrid contribution 2.406 -0.477 -0.580 2.520 sum 8.698 -11.852 -0.477 14.709 Atomic orbital electron populations 1.21437 0.92576 1.01615 1.03526 1.23370 1.00381 0.99129 1.03546 1.88194 1.03014 1.06614 1.97732 1.23497 0.95990 1.00386 1.03485 1.21489 0.91686 0.92922 0.95726 0.89331 1.22485 0.97502 1.02138 1.01893 1.61951 1.58065 1.01936 1.00175 1.22670 0.96165 0.98753 0.95234 1.21959 0.93980 0.86742 1.00523 1.19304 0.95821 0.95127 0.87982 1.20136 0.88666 1.28561 1.12582 0.90739 1.24840 0.94960 0.96910 0.95491 1.69996 1.23301 1.38600 1.20865 0.87202 0.84125 0.80924 0.79684 1.20979 1.22018 1.17255 1.23118 0.97839 0.93899 1.09036 1.22908 1.01936 0.98902 0.98627 0.92026 0.91479 0.91775 0.91324 0.91019 0.90835 0.90704 0.92309 0.92500 0.92229 0.90001 0.96661 0.92787 0.97208 0.91438 0.93006 0.91913 0.89789 0.90049 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.92 37.15 0.37 -1.25 16 2 C -0.12 -1.49 6.66 37.15 0.25 -1.24 16 3 S -0.18 -3.17 21.35 -107.50 -2.30 -5.46 16 4 C -0.08 -1.23 5.34 37.16 0.20 -1.03 16 5 C 0.09 1.50 2.33 -67.71 -0.16 1.34 16 6 H 0.09 1.62 7.74 -51.93 -0.40 1.22 16 7 C -0.18 -2.38 8.47 37.16 0.31 -2.06 16 8 N -0.50 -9.48 4.18 -234.90 -0.98 -10.47 16 9 C 0.02 0.32 7.36 60.06 0.44 0.76 16 10 C 0.10 2.03 3.98 -3.82 -0.02 2.01 16 11 C 0.02 0.45 1.00 -155.66 -0.16 0.29 16 12 C -0.46 -13.08 9.33 -34.44 -0.32 -13.40 16 13 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 14 C 0.08 2.31 5.38 -17.82 -0.10 2.22 16 15 N -0.89 -27.52 13.96 55.43 0.77 -26.74 16 16 Si 0.85 21.43 25.67 -169.99 -4.36 17.07 16 17 H -0.28 -7.02 7.08 56.52 0.40 -6.62 16 18 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.25 -5.89 5.48 56.52 0.31 -5.58 16 20 C -0.20 -4.33 7.51 -26.73 -0.20 -4.53 16 21 C -0.19 -3.84 8.57 -26.73 -0.23 -4.07 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.00 6.38 -51.92 -0.33 0.67 16 29 H 0.06 0.72 6.65 -51.93 -0.35 0.38 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.83 7.32 -51.93 -0.38 0.45 16 32 H 0.08 1.40 5.21 -51.93 -0.27 1.13 16 33 H 0.01 0.23 6.87 -51.93 -0.36 -0.13 16 34 H 0.05 0.77 6.11 -51.93 -0.32 0.46 16 35 H 0.01 0.19 7.15 -51.93 -0.37 -0.18 16 36 H 0.07 1.57 5.77 -51.93 -0.30 1.27 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 39 H 0.08 1.88 8.09 -51.93 -0.42 1.46 16 40 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 41 H 0.07 1.34 5.79 -51.93 -0.30 1.04 16 LS Contribution 323.33 15.07 4.87 4.87 Total: -1.00 -30.49 323.33 -8.85 -39.34 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.25 Total: 2.34 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 0.40 Total: -20.95 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.21 Total: -37.21 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.36 Total: 17.07 kcal Atomic # 16 Polarization: -3.17 SS G_CDS: -2.30 Total: -5.46 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.49 -8.85 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707119704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.575 kcal (2) G-P(sol) polarization free energy of solvation -30.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds