Wall clock time and date at job start Mon Mar 30 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 S 1.81405 * 109.47297 * 2 1 4 4 C 1.81394 * 103.00300 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47078 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47007 * 300.96559 * 5 4 3 7 7 C 1.53002 * 109.47041 * 180.96838 * 5 4 3 8 8 N 1.46899 * 109.47204 * 60.97130 * 5 4 3 9 9 C 1.46891 * 111.00166 * 69.02748 * 8 5 4 10 10 C 1.46901 * 110.99798 * 192.97945 * 8 5 4 11 11 C 1.53005 * 109.46937 * 159.18096 * 10 8 5 12 12 C 1.50695 * 115.54981 * 280.91114 * 11 10 8 13 13 H 1.08001 * 120.00173 * 114.49587 * 12 11 10 14 14 C 1.37880 * 120.00763 * 294.49597 * 12 11 10 15 15 N 1.31508 * 120.00559 * 163.66139 * 14 12 11 16 16 Si 1.86802 * 119.99343 * 343.66461 * 14 12 11 17 17 H 1.48499 * 109.47254 * 93.49761 * 16 14 12 18 18 H 1.48503 * 109.46858 * 213.49827 * 16 14 12 19 19 H 1.48497 * 109.47131 * 333.49495 * 16 14 12 20 20 C 1.52997 * 117.49527 * 135.20851 * 11 10 8 21 21 C 1.52997 * 117.49695 * 66.58462 * 11 10 8 22 22 H 1.09004 * 109.47051 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47502 * 299.99978 * 1 2 3 24 24 H 1.09002 * 109.47182 * 60.00523 * 1 2 3 25 25 H 1.08999 * 109.47661 * 239.99565 * 2 1 3 26 26 H 1.09008 * 109.47310 * 119.99878 * 2 1 3 27 27 H 1.08996 * 109.47428 * 59.99504 * 4 3 2 28 28 H 1.09008 * 109.46966 * 299.99856 * 4 3 2 29 29 H 1.08993 * 109.47448 * 299.99760 * 7 5 4 30 30 H 1.09003 * 109.47201 * 60.00058 * 7 5 4 31 31 H 1.09003 * 109.47048 * 179.97438 * 7 5 4 32 32 H 1.09003 * 109.47544 * 195.15431 * 9 8 5 33 33 H 1.08994 * 109.47641 * 75.15425 * 9 8 5 34 34 H 1.08997 * 109.47405 * 315.15352 * 9 8 5 35 35 H 1.09000 * 109.47264 * 279.18362 * 10 8 5 36 36 H 1.09000 * 109.47169 * 39.18404 * 10 8 5 37 37 H 0.96996 * 119.99914 * 180.02562 * 15 14 12 38 38 H 1.08997 * 117.50375 * 359.97438 * 20 11 10 39 39 H 1.09003 * 117.49821 * 145.02603 * 20 11 10 40 40 H 1.08997 * 117.49973 * 214.97601 * 21 11 10 41 41 H 1.08995 * 117.50015 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9370 1.5059 -0.0008 5 6 4.6063 2.8817 -0.0002 6 1 4.2894 3.4402 -0.8810 7 6 6.1264 2.7094 -0.0253 8 7 4.2166 3.6153 1.2113 9 6 4.8102 3.0066 2.4092 10 6 4.5801 5.0348 1.1070 11 6 3.7380 5.8505 2.0901 12 6 2.3299 6.1515 1.6456 13 1 1.4925 5.7320 2.1834 14 6 2.1104 6.9625 0.5524 15 7 0.9325 6.9735 -0.0324 16 14 3.4863 8.0457 -0.0981 17 1 4.2102 7.3304 -1.1795 18 1 2.9123 9.3054 -0.6358 19 1 4.4299 8.3625 1.0039 20 6 4.4574 6.9111 2.9258 21 6 3.9728 5.6176 3.5839 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 4.2398 0.9545 -0.8909 28 1 4.2405 0.9542 0.8891 29 1 6.4433 2.1509 0.8554 30 1 6.4156 2.1650 -0.9243 31 1 6.6032 3.6896 -0.0253 32 1 4.3058 3.3863 3.2977 33 1 5.8697 3.2581 2.4576 34 1 4.6957 1.9237 2.3612 35 1 5.6368 5.1577 1.3446 36 1 4.3931 5.3841 0.0915 37 1 0.7783 7.5438 -0.8017 38 1 5.5307 7.0275 2.7756 39 1 3.9123 7.8269 3.1543 40 1 3.1089 5.6825 4.2453 41 1 4.7269 4.8830 3.8663 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707119704.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:38 Heat of formation + Delta-G solvation = 14.125848 kcal Electronic energy + Delta-G solvation = -18185.601956 eV Core-core repulsion = 15613.178352 eV Total energy + Delta-G solvation = -2572.423604 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.00109 -37.63224 -34.16516 -33.56667 -32.42915 -29.12012 -28.33363 -27.25683 -25.36980 -24.13987 -23.14259 -20.82288 -20.65999 -18.21416 -17.16643 -17.10390 -16.71994 -15.90119 -15.77905 -15.55925 -15.28422 -14.84370 -14.70041 -14.29399 -13.99580 -13.75768 -13.55284 -13.14189 -12.98872 -12.92583 -12.83025 -12.56694 -12.26744 -12.17323 -11.96390 -11.83016 -11.78194 -11.72967 -11.28242 -10.79049 -10.48082 -10.39292 -10.12808 -8.88917 -8.36660 -8.17996 -6.13306 0.91789 1.34691 1.41008 1.55024 1.95930 2.45231 2.93196 3.15874 3.60856 3.78939 4.08727 4.09279 4.17347 4.19911 4.31347 4.34450 4.45803 4.49716 4.54741 4.58809 4.59575 4.68957 4.76222 4.84422 4.86848 4.91128 4.94939 4.99169 5.03878 5.16077 5.22698 5.26449 5.27119 5.54468 5.58387 5.84839 6.38735 6.41994 6.53910 6.88185 7.47864 8.98853 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.018052 B = 0.007739 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.727473 B = 3617.082581 C = 4229.371861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 S -0.298 6.298 4 C -0.058 4.058 5 C 0.090 3.910 6 H 0.056 0.944 7 C -0.169 4.169 8 N -0.527 5.527 9 C 0.023 3.977 10 C 0.107 3.893 11 C -0.010 4.010 12 C -0.460 4.460 13 H 0.018 0.982 14 C 0.022 3.978 15 N -0.946 5.946 16 Si 0.920 3.080 17 H -0.277 1.277 18 H -0.299 1.299 19 H -0.220 1.220 20 C -0.191 4.191 21 C -0.168 4.168 22 H 0.094 0.906 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.259 0.741 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.094 -14.028 0.668 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.237 4.237 3 S -0.072 6.072 4 C -0.206 4.206 5 C -0.020 4.020 6 H 0.074 0.926 7 C -0.229 4.229 8 N -0.250 5.250 9 C -0.125 4.125 10 C -0.021 4.021 11 C -0.011 4.011 12 C -0.497 4.497 13 H 0.036 0.964 14 C -0.175 4.175 15 N -0.586 5.586 16 Si 0.744 3.256 17 H -0.203 1.203 18 H -0.226 1.226 19 H -0.142 1.142 20 C -0.229 4.229 21 C -0.205 4.205 22 H 0.113 0.887 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.867 -13.069 0.588 16.386 hybrid contribution 1.175 -0.078 -0.670 1.355 sum 11.042 -13.148 -0.082 17.170 Atomic orbital electron populations 1.21472 0.92421 1.03171 1.02078 1.23329 1.00253 0.94916 1.05191 1.88627 1.07802 1.12770 1.98046 1.23422 0.92163 0.99651 1.05392 1.21486 0.94121 0.93016 0.93370 0.92595 1.22375 0.94370 1.02386 1.03789 1.61817 1.59758 1.01247 1.02194 1.22649 0.96863 0.99622 0.93335 1.21656 0.94616 0.87901 0.97907 1.19217 0.93842 0.97774 0.90281 1.20261 0.90137 1.27494 1.11832 0.96377 1.25670 0.97474 0.98364 0.95998 1.70161 1.26140 1.40227 1.22051 0.86151 0.81275 0.78274 0.79854 1.20317 1.22614 1.14195 1.23128 0.99100 0.93310 1.07405 1.22934 1.02088 0.99204 0.96230 0.88709 0.93253 0.93007 0.89270 0.89460 0.88368 0.88969 0.90610 0.90379 0.92897 0.91441 0.94599 0.90936 0.94648 0.94357 0.93193 0.88844 0.91032 0.91425 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.92 71.98 0.71 -2.43 16 2 C -0.09 -2.14 6.66 71.98 0.48 -1.66 16 3 S -0.30 -10.54 21.35 -56.49 -1.21 -11.75 16 4 C -0.06 -1.56 5.34 71.98 0.38 -1.17 16 5 C 0.09 2.79 2.33 44.92 0.10 2.89 16 6 H 0.06 2.08 7.74 -2.39 -0.02 2.06 16 7 C -0.17 -3.84 8.47 71.98 0.61 -3.23 16 8 N -0.53 -19.39 4.18 -897.08 -3.75 -23.14 16 9 C 0.02 0.66 7.36 127.69 0.94 1.60 16 10 C 0.11 4.40 3.98 86.30 0.34 4.74 16 11 C -0.01 -0.45 1.00 -52.93 -0.05 -0.51 16 12 C -0.46 -27.17 9.33 25.60 0.24 -26.93 16 13 H 0.02 1.23 8.06 -2.91 -0.02 1.20 16 14 C 0.02 1.31 5.38 84.66 0.46 1.76 16 15 N -0.95 -61.79 13.96 21.45 0.30 -61.50 16 16 Si 0.92 45.13 25.67 68.60 1.76 46.89 16 17 H -0.28 -13.24 7.08 99.48 0.70 -12.53 16 18 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 19 H -0.22 -9.62 5.48 99.48 0.54 -9.08 16 20 C -0.19 -7.75 7.51 30.59 0.23 -7.52 16 21 C -0.17 -6.62 8.57 30.59 0.26 -6.36 16 22 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.09 2.15 6.38 -2.39 -0.02 2.13 16 29 H 0.07 1.48 6.65 -2.39 -0.02 1.46 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.29 7.32 -2.39 -0.02 1.27 16 32 H 0.07 2.15 5.21 -2.39 -0.01 2.13 16 33 H 0.04 0.90 6.87 -2.39 -0.02 0.89 16 34 H 0.07 1.82 6.11 -2.39 -0.01 1.81 16 35 H 0.04 1.26 7.15 -2.39 -0.02 1.25 16 36 H 0.04 1.77 5.77 -2.39 -0.01 1.76 16 37 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 38 H 0.09 3.25 8.09 -2.39 -0.02 3.23 16 39 H 0.07 3.07 8.09 -2.39 -0.02 3.05 16 40 H 0.07 2.83 8.14 -2.39 -0.02 2.82 16 41 H 0.11 3.53 5.79 -2.39 -0.01 3.51 16 Total: -1.00 -71.49 323.33 2.62 -68.86 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.81 Total: 19.43 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 4.71 Total: -38.81 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -3.45 Total: -84.64 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.76 Total: 46.89 kcal Atomic # 16 Polarization: -10.54 SS G_CDS: -1.21 Total: -11.75 kcal Total: -71.49 2.62 -68.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707119704.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.991 kcal (2) G-P(sol) polarization free energy of solvation -71.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds