Wall clock time and date at job start Mon Mar 30 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81401 * 103.00103 * 2 1 4 4 C 1.53774 * 113.69219 * 85.93502 * 3 2 1 5 5 C 1.53775 * 87.08185 * 89.12619 * 4 3 2 6 6 N 1.46908 * 113.61497 * 139.97915 * 5 4 3 7 7 C 1.46902 * 110.99703 * 73.33604 * 6 5 4 8 8 C 1.46900 * 111.00001 * 197.28866 * 6 5 4 9 9 C 1.53003 * 109.46673 * 170.00486 * 8 6 5 10 10 C 1.53003 * 109.46801 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.46908 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.47125 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99697 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99964 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00219 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47381 * 89.99829 * 16 14 12 18 18 H 1.48501 * 109.47429 * 209.99600 * 16 14 12 19 19 H 1.48508 * 109.47302 * 329.99917 * 16 14 12 20 20 C 1.53779 * 113.61696 * 183.47415 * 3 2 1 21 21 H 1.09009 * 109.47392 * 59.99892 * 1 2 3 22 22 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47310 * 300.00100 * 1 2 3 24 24 H 1.09005 * 112.84699 * 314.66301 * 3 2 1 25 25 H 1.09003 * 113.61685 * 203.68002 * 4 3 2 26 26 H 1.09003 * 113.61516 * 334.57645 * 4 3 2 27 27 H 1.08995 * 113.69309 * 270.87221 * 5 4 3 28 28 H 1.08999 * 109.47197 * 66.12472 * 7 6 5 29 29 H 1.08999 * 109.47194 * 186.12784 * 7 6 5 30 30 H 1.09008 * 109.46972 * 306.12340 * 7 6 5 31 31 H 1.08997 * 109.47040 * 290.00114 * 8 6 5 32 32 H 1.08999 * 109.47318 * 50.00342 * 8 6 5 33 33 H 1.09002 * 109.46635 * 299.99591 * 9 8 6 34 34 H 1.08991 * 109.47695 * 60.00014 * 9 8 6 35 35 H 1.08997 * 109.46904 * 299.99624 * 10 9 8 36 36 H 1.08999 * 109.47324 * 59.99773 * 10 9 8 37 37 H 1.08997 * 109.47470 * 299.99815 * 11 10 9 38 38 H 1.09005 * 109.47118 * 60.00403 * 11 10 9 39 39 H 0.97000 * 119.99778 * 180.02562 * 15 14 12 40 40 H 1.08998 * 113.61518 * 25.33964 * 20 3 2 41 41 H 1.08998 * 113.61579 * 156.25284 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 2.2638 2.3920 1.4046 5 6 3.7486 1.9949 1.4513 6 7 4.6108 3.0123 2.0676 7 6 4.4206 3.0514 3.5238 8 6 6.0213 2.7835 1.7269 9 6 6.8548 3.9874 2.1707 10 6 8.3238 3.7495 1.8152 11 6 9.1572 4.9537 2.2584 12 6 10.6043 4.7191 1.9088 13 1 10.8998 3.8030 1.4191 14 6 11.5506 5.6744 2.2132 15 7 12.8135 5.4695 1.9086 16 14 11.0393 7.2592 3.0595 17 1 11.1085 7.0788 4.5319 18 1 11.9541 8.3556 2.6517 19 1 9.6487 7.6033 2.6678 20 6 3.7310 2.0514 -0.0854 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6292 2.3388 -0.7145 25 1 2.0996 3.4696 1.4084 26 1 1.6481 1.8665 2.1346 27 1 3.9223 0.9953 1.8496 28 1 4.7712 2.1166 3.9612 29 1 4.9873 3.8833 3.9420 30 1 3.3622 3.1834 3.7485 31 1 6.3773 1.8878 2.2357 32 1 6.1181 2.6520 0.6492 33 1 6.4987 4.8832 1.6618 34 1 6.7581 4.1190 3.2483 35 1 8.6801 2.8537 2.3236 36 1 8.4202 3.6183 0.7374 37 1 8.8008 5.8493 1.7496 38 1 9.0609 5.0853 3.3361 39 1 13.4793 6.1415 2.1231 40 1 4.2998 1.2508 -0.5582 41 1 3.9680 3.0358 -0.4889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707306944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:48 Heat of formation + Delta-G solvation = 5.952279 kcal Electronic energy + Delta-G solvation = -16867.853350 eV Core-core repulsion = 14295.075314 eV Total energy + Delta-G solvation = -2572.778037 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.56114 -36.24795 -34.01418 -32.05874 -29.35012 -29.07859 -26.98567 -25.74166 -24.97248 -22.87373 -20.75559 -20.07080 -19.67517 -16.71027 -16.55364 -16.28473 -15.49876 -15.04711 -14.82206 -14.13645 -14.09597 -13.95922 -13.49961 -13.30876 -12.80888 -12.66896 -12.47452 -12.35510 -11.87517 -11.81149 -11.68977 -11.43056 -11.04474 -10.90002 -10.71083 -10.56473 -10.39236 -10.12934 -9.81714 -9.62918 -9.42893 -9.10834 -8.49230 -8.36285 -7.97620 -5.99866 -3.97249 1.35232 2.23993 3.34003 3.41114 3.45998 3.92232 4.14139 4.26993 4.46127 4.49588 4.76086 4.77306 4.88413 5.13169 5.27805 5.31418 5.34151 5.36986 5.49897 5.53227 5.56380 5.57730 5.69364 5.83031 5.87419 5.91366 5.99701 6.08677 6.19423 6.44829 6.70303 6.81860 6.95482 7.10419 7.17474 7.38806 7.51893 7.85591 8.59750 9.05664 9.63246 11.13805 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.050645 B = 0.003060 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.739061 B = 9147.289074 C = 9420.807367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.236 6.236 3 C -0.088 4.088 4 C -0.114 4.114 5 C 0.057 3.943 6 N -0.532 5.532 7 C 0.023 3.977 8 C 0.055 3.945 9 C -0.116 4.116 10 C -0.101 4.101 11 C -0.014 4.014 12 C -0.519 4.519 13 H 0.070 0.930 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.265 1.265 20 C -0.102 4.102 21 H 0.076 0.924 22 H 0.100 0.900 23 H 0.076 0.924 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.024 0.976 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.015 0.985 38 H 0.009 0.991 39 H 0.262 0.738 40 H 0.075 0.925 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.438 -8.270 -1.695 27.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.009 6.009 3 C -0.218 4.218 4 C -0.154 4.154 5 C -0.051 4.051 6 N -0.256 5.256 7 C -0.125 4.125 8 C -0.072 4.072 9 C -0.154 4.154 10 C -0.140 4.140 11 C -0.051 4.051 12 C -0.557 4.557 13 H 0.089 0.911 14 C -0.137 4.137 15 N -0.545 5.545 16 Si 0.708 3.292 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.190 1.190 20 C -0.140 4.140 21 H 0.095 0.905 22 H 0.118 0.882 23 H 0.095 0.905 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.027 0.973 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -25.733 -8.623 -1.887 27.205 hybrid contribution -0.713 1.060 0.786 1.500 sum -26.446 -7.563 -1.101 27.528 Atomic orbital electron populations 1.23378 0.94576 1.06337 1.04936 1.86798 1.06912 1.09625 1.97610 1.24242 1.01919 0.94022 1.01568 1.23226 0.96269 1.01494 0.94423 1.23137 0.93070 0.94178 0.94749 1.62293 1.06829 1.46367 1.10142 1.22367 1.01559 1.00823 0.87753 1.22209 0.86234 0.97863 1.00913 1.21694 0.95708 0.97220 1.00748 1.21423 0.92085 0.99951 1.00510 1.19566 0.95797 0.93983 0.95745 1.21198 0.90298 1.05139 1.39047 0.91139 1.25054 0.94830 0.98357 0.95455 1.69927 1.00999 1.35336 1.48282 0.86758 0.78887 0.83487 0.80031 1.20383 1.21466 1.18953 1.22883 0.91902 1.03125 0.96132 0.90538 0.88180 0.90491 0.88666 0.88515 0.91166 0.91238 0.95766 0.90797 0.91937 0.95030 0.90867 0.91768 0.92614 0.93121 0.92861 0.96671 0.97258 0.92831 0.90656 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.76 101.05 1.09 0.33 16 2 S -0.24 -2.18 21.91 -107.50 -2.36 -4.53 16 3 C -0.09 -0.76 4.43 -25.92 -0.11 -0.88 16 4 C -0.11 -1.00 6.85 -25.93 -0.18 -1.18 16 5 C 0.06 0.61 2.91 -66.90 -0.19 0.42 16 6 N -0.53 -6.54 4.70 -233.90 -1.10 -7.64 16 7 C 0.02 0.26 9.23 60.07 0.55 0.82 16 8 C 0.06 0.77 4.88 -3.82 -0.02 0.75 16 9 C -0.12 -1.89 5.14 -26.73 -0.14 -2.03 16 10 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 12 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 15 N -0.91 -28.53 13.96 55.43 0.77 -27.75 16 16 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 20 C -0.10 -1.01 6.38 -25.92 -0.17 -1.17 16 21 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 22 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 23 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.02 0.27 8.12 -51.93 -0.42 -0.15 16 29 H 0.07 0.88 6.57 -51.93 -0.34 0.53 16 30 H 0.06 0.61 7.62 -51.92 -0.40 0.22 16 31 H 0.03 0.45 8.11 -51.93 -0.42 0.03 16 32 H 0.07 1.00 7.20 -51.93 -0.37 0.63 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.90 6.60 -51.93 -0.34 0.56 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.01 0.37 7.20 -51.93 -0.37 0.00 16 38 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -31.00 336.60 -9.84 -40.85 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -7.72 Total: -4.25 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 0.15 Total: -19.29 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.33 Total: -35.39 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -2.36 Total: -4.53 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.00 -9.84 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707306944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.801 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds