Wall clock time and date at job start Mon Mar 30 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81401 * 103.00103 * 2 1 4 4 C 1.53774 * 113.69219 * 85.93502 * 3 2 1 5 5 C 1.53775 * 87.08185 * 89.12619 * 4 3 2 6 6 N 1.46908 * 113.61497 * 139.97915 * 5 4 3 7 7 C 1.46902 * 110.99703 * 73.33604 * 6 5 4 8 8 C 1.46900 * 111.00001 * 197.28866 * 6 5 4 9 9 C 1.53003 * 109.46673 * 170.00486 * 8 6 5 10 10 C 1.53003 * 109.46801 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.46908 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.47125 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99697 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99964 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00219 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47381 * 89.99829 * 16 14 12 18 18 H 1.48501 * 109.47429 * 209.99600 * 16 14 12 19 19 H 1.48508 * 109.47302 * 329.99917 * 16 14 12 20 20 C 1.53779 * 113.61696 * 183.47415 * 3 2 1 21 21 H 1.09009 * 109.47392 * 59.99892 * 1 2 3 22 22 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47310 * 300.00100 * 1 2 3 24 24 H 1.09005 * 112.84699 * 314.66301 * 3 2 1 25 25 H 1.09003 * 113.61685 * 203.68002 * 4 3 2 26 26 H 1.09003 * 113.61516 * 334.57645 * 4 3 2 27 27 H 1.08995 * 113.69309 * 270.87221 * 5 4 3 28 28 H 1.08999 * 109.47197 * 66.12472 * 7 6 5 29 29 H 1.08999 * 109.47194 * 186.12784 * 7 6 5 30 30 H 1.09008 * 109.46972 * 306.12340 * 7 6 5 31 31 H 1.08997 * 109.47040 * 290.00114 * 8 6 5 32 32 H 1.08999 * 109.47318 * 50.00342 * 8 6 5 33 33 H 1.09002 * 109.46635 * 299.99591 * 9 8 6 34 34 H 1.08991 * 109.47695 * 60.00014 * 9 8 6 35 35 H 1.08997 * 109.46904 * 299.99624 * 10 9 8 36 36 H 1.08999 * 109.47324 * 59.99773 * 10 9 8 37 37 H 1.08997 * 109.47470 * 299.99815 * 11 10 9 38 38 H 1.09005 * 109.47118 * 60.00403 * 11 10 9 39 39 H 0.97000 * 119.99778 * 180.02562 * 15 14 12 40 40 H 1.08998 * 113.61518 * 25.33964 * 20 3 2 41 41 H 1.08998 * 113.61579 * 156.25284 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 2.2638 2.3920 1.4046 5 6 3.7486 1.9949 1.4513 6 7 4.6108 3.0123 2.0676 7 6 4.4206 3.0514 3.5238 8 6 6.0213 2.7835 1.7269 9 6 6.8548 3.9874 2.1707 10 6 8.3238 3.7495 1.8152 11 6 9.1572 4.9537 2.2584 12 6 10.6043 4.7191 1.9088 13 1 10.8998 3.8030 1.4191 14 6 11.5506 5.6744 2.2132 15 7 12.8135 5.4695 1.9086 16 14 11.0393 7.2592 3.0595 17 1 11.1085 7.0788 4.5319 18 1 11.9541 8.3556 2.6517 19 1 9.6487 7.6033 2.6678 20 6 3.7310 2.0514 -0.0854 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6292 2.3388 -0.7145 25 1 2.0996 3.4696 1.4084 26 1 1.6481 1.8665 2.1346 27 1 3.9223 0.9953 1.8496 28 1 4.7712 2.1166 3.9612 29 1 4.9873 3.8833 3.9420 30 1 3.3622 3.1834 3.7485 31 1 6.3773 1.8878 2.2357 32 1 6.1181 2.6520 0.6492 33 1 6.4987 4.8832 1.6618 34 1 6.7581 4.1190 3.2483 35 1 8.6801 2.8537 2.3236 36 1 8.4202 3.6183 0.7374 37 1 8.8008 5.8493 1.7496 38 1 9.0609 5.0853 3.3361 39 1 13.4793 6.1415 2.1231 40 1 4.2998 1.2508 -0.5582 41 1 3.9680 3.0358 -0.4889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707306944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:48 Heat of formation + Delta-G solvation = -12.017314 kcal Electronic energy + Delta-G solvation = -16868.632570 eV Core-core repulsion = 14295.075314 eV Total energy + Delta-G solvation = -2573.557257 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40159 -37.42812 -35.68015 -34.01231 -30.72640 -29.82369 -27.99783 -26.69983 -26.23565 -24.15102 -22.18017 -21.61851 -20.54110 -18.85116 -17.43798 -17.10589 -16.49209 -16.37232 -16.09488 -15.71879 -15.09254 -14.75368 -14.50863 -14.26247 -14.15798 -13.77564 -13.75667 -13.42609 -13.29813 -13.01037 -12.82358 -12.65570 -12.31978 -12.16145 -11.99593 -11.82437 -11.72209 -11.38998 -11.30962 -11.23562 -11.04867 -10.78174 -10.75880 -9.33168 -8.68434 -8.29221 -6.33398 0.73508 1.36100 1.38346 1.51104 1.65229 2.37096 2.96004 3.06049 3.41530 3.52785 3.67762 4.05541 4.11478 4.19618 4.34815 4.36686 4.39423 4.51774 4.55378 4.58846 4.65450 4.80756 4.82351 4.83533 4.86221 4.89475 4.96163 5.03253 5.10870 5.15933 5.21023 5.21221 5.29387 5.58592 5.65615 5.69028 6.08740 6.20392 6.30112 6.74886 7.31378 8.87852 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.050645 B = 0.003060 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.739061 B = 9147.289074 C = 9420.807367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.288 6.288 3 C -0.074 4.074 4 C -0.101 4.101 5 C 0.053 3.947 6 N -0.534 5.534 7 C 0.022 3.978 8 C 0.062 3.938 9 C -0.103 4.103 10 C -0.095 4.095 11 C -0.011 4.011 12 C -0.535 4.535 13 H 0.028 0.972 14 C -0.001 4.001 15 N -0.954 5.954 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.245 1.245 20 C -0.104 4.104 21 H 0.086 0.914 22 H 0.109 0.891 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.021 0.979 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.266 0.734 40 H 0.065 0.935 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.297 -7.090 -0.959 30.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.061 6.061 3 C -0.203 4.203 4 C -0.141 4.141 5 C -0.055 4.055 6 N -0.258 5.258 7 C -0.126 4.126 8 C -0.065 4.065 9 C -0.140 4.140 10 C -0.133 4.133 11 C -0.049 4.049 12 C -0.573 4.573 13 H 0.047 0.953 14 C -0.197 4.197 15 N -0.595 5.595 16 Si 0.778 3.222 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.169 1.169 20 C -0.143 4.143 21 H 0.105 0.895 22 H 0.128 0.872 23 H 0.105 0.895 24 H 0.126 0.874 25 H 0.120 0.880 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -28.616 -7.461 -1.154 29.595 hybrid contribution 0.205 0.582 0.507 0.799 sum -28.411 -6.878 -0.647 29.239 Atomic orbital electron populations 1.23424 0.91268 1.07316 1.05914 1.87008 1.10642 1.10776 1.97723 1.24130 1.00954 0.93412 1.01798 1.23158 0.94578 1.01816 0.94582 1.23180 0.94075 0.93293 0.94971 1.62291 1.05689 1.46929 1.10894 1.22411 1.02684 1.00466 0.87035 1.22020 0.87284 0.96404 1.00822 1.21505 0.93141 0.98275 1.01115 1.21297 0.94205 0.97864 0.99967 1.19532 0.93289 0.95881 0.96151 1.21571 0.93254 1.03780 1.38664 0.95312 1.26097 0.94633 1.02685 0.96265 1.70085 1.02499 1.37030 1.49861 0.85588 0.79426 0.78128 0.79080 1.19108 1.20909 1.16854 1.22876 0.93037 1.02786 0.95553 0.89490 0.87225 0.89539 0.87366 0.87952 0.90472 0.92356 0.96054 0.91249 0.90136 0.95624 0.90842 0.91583 0.92031 0.93850 0.93459 0.96204 0.96475 0.92516 0.91617 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.76 113.37 1.22 0.13 16 2 S -0.29 -4.95 21.91 -56.49 -1.24 -6.19 16 3 C -0.07 -1.14 4.43 31.12 0.14 -1.00 16 4 C -0.10 -1.54 6.85 31.12 0.21 -1.33 16 5 C 0.05 1.06 2.91 45.44 0.13 1.19 16 6 N -0.53 -12.20 4.70 -893.92 -4.21 -16.40 16 7 C 0.02 0.45 9.23 127.69 1.18 1.63 16 8 C 0.06 1.68 4.88 86.30 0.42 2.10 16 9 C -0.10 -3.20 5.14 30.60 0.16 -3.04 16 10 C -0.10 -3.80 5.15 30.60 0.16 -3.64 16 11 C -0.01 -0.54 4.04 29.85 0.12 -0.41 16 12 C -0.53 -31.95 9.66 25.60 0.25 -31.71 16 13 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 14 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 15 N -0.95 -61.37 13.96 21.44 0.30 -61.07 16 16 Si 0.95 45.24 27.47 68.60 1.88 47.13 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 20 C -0.10 -1.94 6.38 31.12 0.20 -1.74 16 21 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 22 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.02 0.45 8.12 -2.39 -0.02 0.43 16 29 H 0.07 1.49 6.57 -2.39 -0.02 1.48 16 30 H 0.08 1.36 7.62 -2.38 -0.02 1.34 16 31 H 0.03 0.72 8.11 -2.39 -0.02 0.70 16 32 H 0.07 1.96 7.20 -2.39 -0.02 1.94 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 34 H 0.06 1.86 6.60 -2.39 -0.02 1.84 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 38 H 0.02 0.79 7.57 -2.38 -0.02 0.77 16 39 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 40 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 41 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -67.26 336.60 2.28 -64.98 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.90 Total: 8.95 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 4.65 Total: -37.40 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -3.91 Total: -77.47 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Atomic # 16 Polarization: -4.95 SS G_CDS: -1.24 Total: -6.19 kcal Total: -67.26 2.28 -64.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707306944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.962 kcal (2) G-P(sol) polarization free energy of solvation -67.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds