Wall clock time and date at job start Mon Mar 30 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 110.99631 * 2 1 4 4 C 1.52998 * 109.47409 * 293.95410 * 3 2 1 5 5 C 1.52994 * 109.47417 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47417 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47279 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99938 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00101 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99883 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 120.00025 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47239 * 90.00405 * 11 9 7 13 13 H 1.48506 * 109.47114 * 210.00681 * 11 9 7 14 14 H 1.48500 * 109.47519 * 330.00433 * 11 9 7 15 15 C 1.46897 * 111.00155 * 123.95129 * 2 1 3 16 16 H 1.09003 * 109.39060 * 185.84676 * 15 2 1 17 17 C 1.52586 * 109.38719 * 66.04990 * 15 2 1 18 18 C 1.52575 * 110.72456 * 169.27170 * 17 15 2 19 19 C 1.53102 * 109.95374 * 70.67734 * 18 17 15 20 20 S 1.81739 * 108.84117 * 296.97150 * 19 18 17 21 21 C 1.53098 * 109.30969 * 305.60583 * 15 2 1 22 22 H 1.08994 * 109.47011 * 296.04604 * 1 2 3 23 23 H 1.09000 * 109.47244 * 56.04813 * 1 2 3 24 24 H 1.08999 * 109.46412 * 176.04328 * 1 2 3 25 25 H 1.09000 * 109.47332 * 53.95300 * 3 2 1 26 26 H 1.09007 * 109.47049 * 173.95326 * 3 2 1 27 27 H 1.09002 * 109.47243 * 300.00470 * 4 3 2 28 28 H 1.09007 * 109.47084 * 59.99937 * 4 3 2 29 29 H 1.09008 * 109.46882 * 299.99654 * 5 4 3 30 30 H 1.09001 * 109.47280 * 59.99384 * 5 4 3 31 31 H 1.09002 * 109.47243 * 300.00227 * 6 5 4 32 32 H 1.09007 * 109.47084 * 59.99694 * 6 5 4 33 33 H 0.96993 * 120.00267 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.22563 * 289.59521 * 17 15 2 35 35 H 1.09001 * 109.22349 * 48.95367 * 17 15 2 36 36 H 1.09000 * 109.39151 * 190.82091 * 18 17 15 37 37 H 1.09004 * 109.39609 * 310.52727 * 18 17 15 38 38 H 1.09003 * 109.57550 * 177.16316 * 19 18 17 39 39 H 1.09000 * 109.68175 * 56.84866 * 19 18 17 40 40 H 1.08999 * 109.57329 * 302.92266 * 21 15 2 41 41 H 1.08991 * 109.57678 * 63.18621 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4857 -1.3185 6 6 1.8156 4.1719 -2.6364 7 6 2.3556 5.5789 -2.6364 8 1 2.9043 5.9467 -1.7820 9 6 2.1500 6.3963 -3.7276 10 7 1.4823 5.9482 -4.7682 11 14 2.8200 8.1399 -3.7278 12 1 4.1917 8.1431 -4.2967 13 1 1.9405 9.0080 -4.5514 14 1 2.8603 8.6550 -2.3356 15 6 1.9955 -0.7659 1.1376 16 1 3.0801 -0.6630 1.1723 17 6 1.6316 -2.2381 0.9689 18 6 2.3798 -3.0988 1.9824 19 6 1.8247 -2.8526 3.3878 20 16 2.1209 -1.1176 3.8403 21 6 1.3916 -0.2238 2.4358 22 1 -0.3633 0.4512 0.9232 23 1 -0.3634 0.5739 -0.8524 24 1 -0.3632 -1.0252 -0.0709 25 1 1.5611 1.9274 0.8309 26 1 3.0798 1.3445 0.1083 27 1 2.0657 1.5016 -2.1492 28 1 0.5471 2.0845 -1.4265 29 1 1.7461 4.0418 -0.4875 30 1 3.2644 3.4584 -1.2103 31 1 2.2492 3.6159 -3.4677 32 1 0.7312 4.1993 -2.7440 33 1 1.3373 6.5233 -5.5357 34 1 0.5586 -2.3617 1.1157 35 1 1.8947 -2.5597 -0.0388 36 1 2.2575 -4.1507 1.7242 37 1 3.4393 -2.8435 1.9620 38 1 2.3287 -3.5068 4.0993 39 1 0.7539 -3.0557 3.4003 40 1 1.6128 0.8398 2.5252 41 1 0.3120 -0.3728 2.4265 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709712083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:04 Heat of formation + Delta-G solvation = -25.463860 kcal Electronic energy + Delta-G solvation = -17179.714321 eV Core-core repulsion = 14605.573979 eV Total energy + Delta-G solvation = -2574.140343 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17359 -35.75793 -34.11890 -32.28496 -30.34878 -28.48767 -27.55706 -26.38256 -24.37045 -22.60753 -20.95138 -20.00799 -19.86439 -17.26080 -16.18658 -15.76696 -15.53419 -15.20586 -14.55013 -14.54774 -14.31726 -13.92874 -13.63429 -13.43982 -12.77562 -12.49032 -12.25551 -11.88122 -11.71134 -11.66224 -11.60215 -11.47645 -11.10571 -10.95505 -10.82852 -10.47132 -10.43818 -10.32995 -10.06124 -9.59676 -9.24563 -8.99227 -8.50347 -8.31455 -7.81819 -5.96673 -3.98819 1.48890 2.24279 3.33716 3.39694 3.43268 3.84448 4.31563 4.47080 4.48651 4.58989 4.64957 4.87847 5.06164 5.12950 5.15669 5.30914 5.34241 5.38260 5.38930 5.48279 5.53773 5.63301 5.69548 5.84019 5.90459 5.92344 5.99108 6.15203 6.24652 6.52097 6.81669 6.96885 7.03288 7.05422 7.23856 7.72313 7.88125 8.04484 8.47401 9.08745 9.65023 11.14721 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.047047 B = 0.003176 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.004984 B = 8815.272725 C = 9139.675531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.530 5.530 3 C 0.053 3.947 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.022 3.978 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.086 3.914 16 H 0.093 0.907 17 C -0.121 4.121 18 C -0.120 4.120 19 C -0.083 4.083 20 S -0.265 6.265 21 C -0.115 4.115 22 H 0.027 0.973 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 -19.089 14.656 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.253 5.253 3 C -0.074 4.074 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.015 4.015 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.025 4.025 16 H 0.111 0.889 17 C -0.158 4.158 18 C -0.159 4.159 19 C -0.231 4.231 20 S -0.039 6.039 21 C -0.265 4.265 22 H 0.046 0.954 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.442 -18.845 14.966 24.069 hybrid contribution -0.631 0.995 -0.341 1.226 sum -1.073 -17.850 14.626 23.102 Atomic orbital electron populations 1.22529 0.87812 1.01914 1.01207 1.62330 1.07963 1.14888 1.40133 1.22302 0.99880 0.86728 0.98495 1.21673 1.00826 0.96900 0.95705 1.21602 0.99384 0.92912 1.00865 1.19082 0.96659 0.94641 0.91143 1.21295 1.34703 0.98040 1.01796 0.92779 1.25032 0.95359 0.98482 0.95664 1.69966 1.41042 1.36480 1.06104 0.86612 0.78846 0.84685 0.77969 1.20667 1.21245 1.19909 1.21998 1.00308 0.93607 0.86549 0.88858 1.21561 1.00261 0.93504 1.00520 1.21723 1.01067 1.00487 0.92632 1.23477 1.04255 0.94829 1.00550 1.86934 1.79738 1.04427 1.32843 1.24289 1.03166 1.03057 0.95957 0.95441 0.90414 0.91676 0.94989 0.90890 0.91658 0.92542 0.93732 0.93442 0.96623 0.96778 0.93056 0.91944 0.89790 0.90619 0.90406 0.87874 0.90022 0.87688 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 8.59 60.07 0.52 0.67 16 2 N -0.53 -6.46 4.71 -235.08 -1.11 -7.56 16 3 C 0.05 0.74 4.52 -3.82 -0.02 0.73 16 4 C -0.11 -1.93 5.14 -26.74 -0.14 -2.07 16 5 C -0.11 -2.27 5.15 -26.74 -0.14 -2.41 16 6 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 11 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.09 0.88 2.04 -67.88 -0.14 0.74 16 16 H 0.09 1.04 7.85 -51.93 -0.41 0.63 16 17 C -0.12 -1.03 4.54 -27.16 -0.12 -1.15 16 18 C -0.12 -0.85 5.75 -26.90 -0.15 -1.00 16 19 C -0.08 -0.61 6.45 37.21 0.24 -0.37 16 20 S -0.27 -2.71 22.33 -107.50 -2.40 -5.11 16 21 C -0.11 -1.17 4.92 37.21 0.18 -0.99 16 22 H 0.03 0.29 6.27 -51.93 -0.33 -0.03 16 23 H 0.08 0.95 6.30 -51.93 -0.33 0.62 16 24 H 0.06 0.63 6.70 -51.93 -0.35 0.28 16 25 H 0.03 0.44 6.97 -51.93 -0.36 0.08 16 26 H 0.07 1.01 7.93 -51.92 -0.41 0.60 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.96 6.47 -51.92 -0.34 0.63 16 29 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.06 0.52 6.99 -51.93 -0.36 0.15 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 1.17 6.76 -51.93 -0.35 0.82 16 41 H 0.09 0.85 6.52 -51.93 -0.34 0.51 16 LS Contribution 323.99 15.07 4.88 4.88 Total: -1.00 -30.22 323.99 -10.56 -40.79 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -7.34 Total: -4.03 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -0.32 Total: -19.25 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: -0.37 Total: -34.22 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.40 Total: -5.11 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.22 -10.56 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709712083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.323 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds