Wall clock time and date at job start Mon Mar 30 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 110.99631 * 2 1 4 4 C 1.52998 * 109.47409 * 293.95410 * 3 2 1 5 5 C 1.52994 * 109.47417 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.47417 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47279 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99938 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00101 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99883 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 120.00025 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47239 * 90.00405 * 11 9 7 13 13 H 1.48506 * 109.47114 * 210.00681 * 11 9 7 14 14 H 1.48500 * 109.47519 * 330.00433 * 11 9 7 15 15 C 1.46897 * 111.00155 * 123.95129 * 2 1 3 16 16 H 1.09003 * 109.39060 * 185.84676 * 15 2 1 17 17 C 1.52586 * 109.38719 * 66.04990 * 15 2 1 18 18 C 1.52575 * 110.72456 * 169.27170 * 17 15 2 19 19 C 1.53102 * 109.95374 * 70.67734 * 18 17 15 20 20 S 1.81739 * 108.84117 * 296.97150 * 19 18 17 21 21 C 1.53098 * 109.30969 * 305.60583 * 15 2 1 22 22 H 1.08994 * 109.47011 * 296.04604 * 1 2 3 23 23 H 1.09000 * 109.47244 * 56.04813 * 1 2 3 24 24 H 1.08999 * 109.46412 * 176.04328 * 1 2 3 25 25 H 1.09000 * 109.47332 * 53.95300 * 3 2 1 26 26 H 1.09007 * 109.47049 * 173.95326 * 3 2 1 27 27 H 1.09002 * 109.47243 * 300.00470 * 4 3 2 28 28 H 1.09007 * 109.47084 * 59.99937 * 4 3 2 29 29 H 1.09008 * 109.46882 * 299.99654 * 5 4 3 30 30 H 1.09001 * 109.47280 * 59.99384 * 5 4 3 31 31 H 1.09002 * 109.47243 * 300.00227 * 6 5 4 32 32 H 1.09007 * 109.47084 * 59.99694 * 6 5 4 33 33 H 0.96993 * 120.00267 * 179.97438 * 10 9 7 34 34 H 1.09004 * 109.22563 * 289.59521 * 17 15 2 35 35 H 1.09001 * 109.22349 * 48.95367 * 17 15 2 36 36 H 1.09000 * 109.39151 * 190.82091 * 18 17 15 37 37 H 1.09004 * 109.39609 * 310.52727 * 18 17 15 38 38 H 1.09003 * 109.57550 * 177.16316 * 19 18 17 39 39 H 1.09000 * 109.68175 * 56.84866 * 19 18 17 40 40 H 1.08999 * 109.57329 * 302.92266 * 21 15 2 41 41 H 1.08991 * 109.57678 * 63.18621 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4857 -1.3185 6 6 1.8156 4.1719 -2.6364 7 6 2.3556 5.5789 -2.6364 8 1 2.9043 5.9467 -1.7820 9 6 2.1500 6.3963 -3.7276 10 7 1.4823 5.9482 -4.7682 11 14 2.8200 8.1399 -3.7278 12 1 4.1917 8.1431 -4.2967 13 1 1.9405 9.0080 -4.5514 14 1 2.8603 8.6550 -2.3356 15 6 1.9955 -0.7659 1.1376 16 1 3.0801 -0.6630 1.1723 17 6 1.6316 -2.2381 0.9689 18 6 2.3798 -3.0988 1.9824 19 6 1.8247 -2.8526 3.3878 20 16 2.1209 -1.1176 3.8403 21 6 1.3916 -0.2238 2.4358 22 1 -0.3633 0.4512 0.9232 23 1 -0.3634 0.5739 -0.8524 24 1 -0.3632 -1.0252 -0.0709 25 1 1.5611 1.9274 0.8309 26 1 3.0798 1.3445 0.1083 27 1 2.0657 1.5016 -2.1492 28 1 0.5471 2.0845 -1.4265 29 1 1.7461 4.0418 -0.4875 30 1 3.2644 3.4584 -1.2103 31 1 2.2492 3.6159 -3.4677 32 1 0.7312 4.1993 -2.7440 33 1 1.3373 6.5233 -5.5357 34 1 0.5586 -2.3617 1.1157 35 1 1.8947 -2.5597 -0.0388 36 1 2.2575 -4.1507 1.7242 37 1 3.4393 -2.8435 1.9620 38 1 2.3287 -3.5068 4.0993 39 1 0.7539 -3.0557 3.4003 40 1 1.6128 0.8398 2.5252 41 1 0.3120 -0.3728 2.4265 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709712083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:04 Heat of formation + Delta-G solvation = -42.529842 kcal Electronic energy + Delta-G solvation = -17180.454358 eV Core-core repulsion = 14605.573979 eV Total energy + Delta-G solvation = -2574.880379 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.08357 -36.94196 -35.62490 -34.09145 -31.48038 -29.90635 -28.28971 -27.66329 -25.91336 -23.74578 -22.23061 -21.56080 -20.74121 -18.45353 -18.02922 -16.77024 -16.61577 -16.32865 -16.19062 -15.46691 -15.36239 -14.98665 -14.50214 -14.47255 -14.08251 -13.83964 -13.60493 -13.40589 -13.08465 -12.86321 -12.69675 -12.39979 -12.38051 -12.31488 -12.16337 -12.00025 -11.78265 -11.61102 -11.34296 -11.24450 -10.93207 -10.77694 -10.55771 -9.43345 -8.63765 -8.20377 -6.31857 0.76114 1.39148 1.40824 1.51943 1.54022 2.40491 2.90280 3.12317 3.56904 3.77150 3.90412 3.96922 4.05767 4.14529 4.20975 4.33333 4.40740 4.48212 4.53502 4.58386 4.59026 4.74137 4.78454 4.84655 4.86555 4.95251 5.03921 5.06874 5.20102 5.23001 5.26365 5.30672 5.36654 5.54857 5.77196 5.86432 6.05348 6.09574 6.25818 6.85686 7.37488 8.91555 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.047047 B = 0.003176 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.004984 B = 8815.272725 C = 9139.675531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.538 5.538 3 C 0.064 3.936 4 C -0.102 4.102 5 C -0.097 4.097 6 C 0.025 3.975 7 C -0.546 4.546 8 H 0.059 0.941 9 C -0.002 4.002 10 N -0.934 5.934 11 Si 0.966 3.034 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.263 1.263 15 C 0.089 3.911 16 H 0.084 0.916 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.071 4.071 20 S -0.305 6.305 21 C -0.104 4.104 22 H 0.033 0.967 23 H 0.063 0.937 24 H 0.083 0.917 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.050 0.950 31 H -0.011 1.011 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 -19.840 15.836 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.261 5.261 3 C -0.064 4.064 4 C -0.140 4.140 5 C -0.136 4.136 6 C -0.013 4.013 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.200 4.200 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.187 1.187 15 C -0.021 4.021 16 H 0.102 0.898 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.219 4.219 20 S -0.080 6.080 21 C -0.254 4.254 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.158 -19.611 16.162 25.414 hybrid contribution -0.740 1.166 -0.720 1.557 sum -0.897 -18.445 15.442 24.073 Atomic orbital electron populations 1.22545 0.87113 1.02897 1.00845 1.62288 1.08659 1.13688 1.41425 1.22063 1.00073 0.87820 0.96424 1.21483 1.00369 0.94769 0.97360 1.21407 0.99722 0.94720 0.97701 1.19003 0.94691 0.94335 0.93232 1.21750 1.35027 0.99346 1.02225 0.92263 1.26014 0.95476 1.03374 0.95131 1.70100 1.42148 1.38362 1.06850 0.85439 0.78316 0.78726 0.78525 1.19689 1.20634 1.18733 1.22008 0.99688 0.94572 0.85834 0.89760 1.21532 1.00857 0.92156 1.00854 1.21692 1.00415 1.01374 0.91905 1.23564 1.05129 0.92227 1.00996 1.87087 1.80041 1.07469 1.33391 1.24155 1.03251 1.02300 0.95714 0.94887 0.91819 0.89871 0.94646 0.90731 0.92621 0.92733 0.93323 0.93096 0.99241 0.99247 0.92753 0.91287 0.90131 0.88385 0.90961 0.86401 0.89024 0.88975 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.29 8.59 127.69 1.10 1.39 16 2 N -0.54 -12.53 4.71 -897.65 -4.23 -16.76 16 3 C 0.06 1.74 4.52 86.30 0.39 2.13 16 4 C -0.10 -3.50 5.14 30.59 0.16 -3.34 16 5 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 6 C 0.02 1.33 4.97 29.85 0.15 1.48 16 7 C -0.55 -31.94 9.11 25.60 0.23 -31.70 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 10 N -0.93 -58.06 13.29 21.45 0.28 -57.78 16 11 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 15 C 0.09 1.71 2.04 44.81 0.09 1.80 16 16 H 0.08 1.79 7.85 -2.39 -0.02 1.77 16 17 C -0.12 -1.72 4.54 30.32 0.14 -1.58 16 18 C -0.11 -1.32 5.75 30.49 0.18 -1.14 16 19 C -0.07 -0.87 6.45 72.02 0.46 -0.41 16 20 S -0.31 -5.87 22.33 -56.49 -1.26 -7.13 16 21 C -0.10 -2.01 4.92 72.01 0.35 -1.65 16 22 H 0.03 0.66 6.27 -2.39 -0.01 0.64 16 23 H 0.06 1.52 6.30 -2.39 -0.02 1.51 16 24 H 0.08 1.44 6.70 -2.39 -0.02 1.43 16 25 H 0.04 0.95 6.97 -2.39 -0.02 0.93 16 26 H 0.07 2.02 7.93 -2.38 -0.02 2.00 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.88 6.47 -2.38 -0.02 1.87 16 29 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.07 0.94 6.99 -2.38 -0.02 0.93 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.95 8.06 -2.39 -0.02 0.93 16 38 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 2.00 6.76 -2.39 -0.02 1.98 16 41 H 0.09 1.64 6.52 -2.39 -0.02 1.63 16 Total: -1.00 -65.21 323.99 1.66 -63.54 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.97 Total: 7.70 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 3.87 Total: -36.62 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -3.94 Total: -74.54 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: -5.87 SS G_CDS: -1.26 Total: -7.13 kcal Total: -65.21 1.66 -63.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709712083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.014 kcal (2) G-P(sol) polarization free energy of solvation -65.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds