Wall clock time and date at job start Mon Mar 30 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46891 * 111.00462 * 2 1 4 4 C 1.52999 * 109.47412 * 293.95602 * 3 2 1 5 5 C 1.52999 * 109.47415 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47216 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47192 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99627 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00150 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00290 * 180.02562 * 9 7 6 11 11 Si 1.86799 * 119.99880 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47117 * 90.00386 * 11 9 7 13 13 H 1.48500 * 109.47169 * 210.00059 * 11 9 7 14 14 H 1.48501 * 109.47506 * 330.00229 * 11 9 7 15 15 C 1.46899 * 110.99815 * 123.95640 * 2 1 3 16 16 H 1.08996 * 109.31020 * 188.84513 * 15 2 1 17 17 C 1.52582 * 109.39193 * 308.59988 * 15 2 1 18 18 C 1.52574 * 110.69203 * 190.80144 * 17 15 2 19 19 C 1.53093 * 109.96135 * 289.34387 * 18 17 15 20 20 S 1.81754 * 108.83935 * 63.02244 * 19 18 17 21 21 C 1.53032 * 109.33045 * 69.10658 * 15 2 1 22 22 H 1.09005 * 109.47107 * 302.32277 * 1 2 3 23 23 H 1.09005 * 109.46885 * 62.31470 * 1 2 3 24 24 H 1.08997 * 109.47935 * 182.31893 * 1 2 3 25 25 H 1.09003 * 109.47193 * 53.95423 * 3 2 1 26 26 H 1.08996 * 109.47415 * 173.95229 * 3 2 1 27 27 H 1.09003 * 109.46795 * 300.00065 * 4 3 2 28 28 H 1.09008 * 109.47008 * 59.99808 * 4 3 2 29 29 H 1.09003 * 109.47401 * 299.99949 * 5 4 3 30 30 H 1.08998 * 109.46931 * 60.00202 * 5 4 3 31 31 H 1.08993 * 109.47159 * 300.00378 * 6 5 4 32 32 H 1.08998 * 109.46751 * 60.00404 * 6 5 4 33 33 H 0.97002 * 120.00561 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.22590 * 70.50135 * 17 15 2 35 35 H 1.08998 * 109.22558 * 311.10513 * 17 15 2 36 36 H 1.09002 * 109.39415 * 49.49661 * 18 17 15 37 37 H 1.09009 * 109.38888 * 169.29583 * 18 17 15 38 38 H 1.08996 * 109.58224 * 182.83451 * 19 18 17 39 39 H 1.09008 * 109.57405 * 303.09176 * 19 18 17 40 40 H 1.08998 * 109.58903 * 56.99911 * 21 15 2 41 41 H 1.09005 * 109.69299 * 296.66639 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 -1.3182 5 6 2.1794 3.4860 -1.3179 6 6 1.8160 4.1718 -2.6365 7 6 2.3551 5.5791 -2.6359 8 1 2.9026 5.9473 -1.7809 9 6 2.1494 6.3965 -3.7270 10 7 2.6203 7.6245 -3.7268 11 14 1.2031 5.7594 -5.2062 12 1 -0.2430 6.0478 -5.0304 13 1 1.6958 6.4308 -6.4357 14 1 1.4042 4.2932 -5.3285 15 6 1.9954 -0.7660 1.1376 16 1 3.0735 -0.6194 1.2029 17 6 1.3386 -0.2769 2.4250 18 6 2.0468 -0.8572 3.6456 19 6 1.7544 -2.3558 3.7562 20 16 2.4352 -3.1960 2.2953 21 6 1.6961 -2.2523 0.9293 22 1 -0.3633 0.5495 0.8685 23 1 -0.3633 0.4775 -0.9101 24 1 -0.3635 -1.0267 0.0416 25 1 1.5612 1.9273 0.8309 26 1 3.0797 1.3442 0.1083 27 1 2.0659 1.5015 -2.1491 28 1 0.5472 2.0845 -1.4264 29 1 1.7448 4.0417 -0.4870 30 1 3.2637 3.4592 -1.2096 31 1 2.2509 3.6160 -3.4671 32 1 0.7318 4.1986 -2.7452 33 1 2.4753 8.1997 -4.4942 34 1 0.2937 -0.5870 2.4352 35 1 1.3904 0.8111 2.4635 36 1 3.1216 -0.7045 3.5471 37 1 1.6906 -0.3532 4.5442 38 1 2.2214 -2.7537 4.6571 39 1 0.6770 -2.5153 3.8024 40 1 2.1250 -2.5824 -0.0168 41 1 0.6178 -2.4116 0.9168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709712178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:07 Heat of formation + Delta-G solvation = -40.512196 kcal Electronic energy + Delta-G solvation = -17244.823257 eV Core-core repulsion = 14670.030369 eV Total energy + Delta-G solvation = -2574.792887 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13555 -36.91566 -35.49899 -34.16080 -31.91437 -30.09761 -28.34607 -27.62719 -25.73221 -23.25247 -22.53724 -21.67884 -20.66824 -18.86208 -18.02064 -16.62497 -16.54632 -16.31416 -16.23573 -15.51564 -15.21288 -15.03988 -14.73132 -14.52590 -14.06333 -13.92212 -13.65357 -13.44852 -13.28093 -12.88072 -12.64062 -12.48573 -12.33217 -12.28675 -12.02745 -11.87210 -11.75481 -11.70716 -11.34944 -11.27437 -11.18183 -10.76495 -10.67291 -9.27444 -8.70212 -8.29884 -6.34019 0.79015 1.35454 1.37911 1.50432 1.52766 2.36428 2.99805 3.05556 3.56764 3.70366 3.84300 4.01163 4.04812 4.15092 4.20971 4.38812 4.41697 4.48588 4.50875 4.56502 4.63339 4.65442 4.79243 4.80987 4.83078 4.93670 4.96532 5.06625 5.10344 5.14581 5.19712 5.21698 5.28261 5.57993 5.65241 5.68501 6.07060 6.10278 6.29272 6.74438 7.30953 8.87179 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.048734 B = 0.003288 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.414700 B = 8514.708035 C = 8762.691782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.541 5.541 3 C 0.064 3.936 4 C -0.104 4.104 5 C -0.095 4.095 6 C -0.011 4.011 7 C -0.535 4.535 8 H 0.030 0.970 9 C 0.001 3.999 10 N -0.954 5.954 11 Si 0.954 3.046 12 H -0.265 1.265 13 H -0.284 1.284 14 H -0.246 1.246 15 C 0.087 3.913 16 H 0.082 0.918 17 C -0.157 4.157 18 C -0.114 4.114 19 C -0.072 4.072 20 S -0.300 6.300 21 C -0.058 4.058 22 H 0.032 0.968 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.037 0.963 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 -23.058 14.168 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.264 5.264 3 C -0.064 4.064 4 C -0.142 4.142 5 C -0.133 4.133 6 C -0.049 4.049 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.196 4.196 10 N -0.595 5.595 11 Si 0.777 3.223 12 H -0.190 1.190 13 H -0.210 1.210 14 H -0.170 1.170 15 C -0.023 4.023 16 H 0.100 0.900 17 C -0.196 4.196 18 C -0.154 4.154 19 C -0.220 4.220 20 S -0.074 6.074 21 C -0.207 4.207 22 H 0.051 0.949 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.134 0.866 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.630 -24.052 13.592 28.012 hybrid contribution -1.131 1.929 0.044 2.236 sum -5.761 -22.123 13.636 26.619 Atomic orbital electron populations 1.22525 0.87006 1.02398 1.01263 1.62220 1.08702 1.13669 1.41834 1.22057 0.99943 0.87637 0.96735 1.21515 1.00846 0.94264 0.97548 1.21293 0.99759 0.94846 0.97389 1.19530 0.96029 0.93669 0.95663 1.21576 1.34941 0.98324 1.02452 0.95200 1.26077 0.96583 0.94794 1.02115 1.70076 1.48298 1.08822 1.32279 0.85606 0.79002 0.79915 0.77812 1.19024 1.20951 1.16988 1.21907 0.99890 0.91971 0.88540 0.89960 1.22178 1.00805 1.01440 0.95186 1.21652 1.01515 0.93658 0.98533 1.23515 1.04096 0.97387 0.97022 1.87098 1.68067 1.48034 1.04186 1.23388 1.03531 0.95294 0.98451 0.94906 0.91436 0.90293 0.94515 0.91046 0.91925 0.91924 0.93549 0.93515 0.96397 0.96448 0.92501 0.90912 0.91509 0.91087 0.89294 0.86565 0.89008 0.87587 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.31 127.69 1.06 1.36 16 2 N -0.54 -11.49 4.68 -897.83 -4.21 -15.69 16 3 C 0.06 1.59 4.60 86.30 0.40 1.99 16 4 C -0.10 -3.13 5.14 30.59 0.16 -2.97 16 5 C -0.09 -3.68 5.15 30.59 0.16 -3.52 16 6 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 7 C -0.53 -31.66 9.66 25.60 0.25 -31.41 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 9 C 0.00 0.04 5.47 84.65 0.46 0.50 16 10 N -0.95 -61.00 13.96 21.44 0.30 -60.70 16 11 Si 0.95 45.00 27.47 68.60 1.88 46.89 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 14 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 15 C 0.09 1.57 2.02 44.79 0.09 1.66 16 16 H 0.08 1.68 7.78 -2.39 -0.02 1.66 16 17 C -0.16 -2.39 3.88 30.31 0.12 -2.27 16 18 C -0.11 -1.43 5.75 30.48 0.18 -1.25 16 19 C -0.07 -0.87 6.46 72.01 0.46 -0.41 16 20 S -0.30 -5.25 22.33 -56.49 -1.26 -6.51 16 21 C -0.06 -0.97 5.65 71.99 0.41 -0.57 16 22 H 0.03 0.58 6.80 -2.38 -0.02 0.57 16 23 H 0.07 1.36 6.58 -2.38 -0.02 1.35 16 24 H 0.08 1.21 6.41 -2.39 -0.02 1.19 16 25 H 0.04 0.90 6.89 -2.39 -0.02 0.88 16 26 H 0.07 1.80 7.89 -2.39 -0.02 1.78 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.81 6.60 -2.38 -0.02 1.80 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 32 H 0.02 0.79 7.57 -2.39 -0.02 0.78 16 33 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 34 H 0.07 1.03 7.03 -2.39 -0.02 1.02 16 35 H 0.07 1.15 6.61 -2.39 -0.02 1.14 16 36 H 0.07 1.01 8.06 -2.39 -0.02 0.99 16 37 H 0.09 0.88 8.14 -2.38 -0.02 0.87 16 38 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.11 1.92 8.14 -2.39 -0.02 1.91 16 41 H 0.09 1.36 6.68 -2.38 -0.02 1.35 16 Total: -1.00 -65.99 320.70 1.49 -64.50 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.92 Total: 8.84 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 3.86 Total: -37.32 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -3.91 Total: -76.40 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.89 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.26 Total: -6.51 kcal Total: -65.99 1.49 -64.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709712178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.984 kcal (2) G-P(sol) polarization free energy of solvation -65.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds