Wall clock time and date at job start Mon Mar 30 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81401 * 109.47248 * 2 1 4 4 C 1.81401 * 103.00003 * 179.97438 * 3 2 1 5 5 C 1.53120 * 109.52109 * 294.68070 * 4 3 2 6 6 C 1.53041 * 109.27648 * 182.43851 * 5 4 3 7 7 N 1.46847 * 109.52130 * 59.18200 * 6 5 4 8 8 C 1.46900 * 111.00083 * 174.15800 * 7 6 5 9 9 H 1.08993 * 109.47080 * 173.60210 * 8 7 6 10 10 C 1.52999 * 109.46906 * 53.59934 * 8 7 6 11 11 C 1.52998 * 109.46989 * 293.60386 * 8 7 6 12 12 C 1.50704 * 109.47248 * 295.99245 * 11 8 7 13 13 H 1.08003 * 119.99671 * 0.02562 * 12 11 8 14 14 C 1.37872 * 120.00588 * 180.02562 * 12 11 8 15 15 N 1.31519 * 119.99490 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00379 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47067 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47425 * 119.99837 * 16 14 12 19 19 H 1.48501 * 109.47170 * 239.99739 * 16 14 12 20 20 C 1.46841 * 111.19722 * 298.25901 * 7 6 5 21 21 C 1.53038 * 109.52800 * 61.74038 * 20 7 6 22 22 H 1.09003 * 109.47170 * 300.00288 * 1 2 3 23 23 H 1.09001 * 109.46952 * 59.99846 * 1 2 3 24 24 H 1.08992 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46918 * 119.99647 * 2 1 3 26 26 H 1.08994 * 109.47381 * 239.99769 * 2 1 3 27 27 H 1.08998 * 109.52104 * 54.86793 * 4 3 2 28 28 H 1.09000 * 109.50710 * 302.38600 * 5 4 3 29 29 H 1.09007 * 109.50519 * 62.49977 * 5 4 3 30 30 H 1.09001 * 109.46108 * 299.16536 * 6 5 4 31 31 H 1.09003 * 109.45741 * 179.19852 * 6 5 4 32 32 H 1.09005 * 109.47085 * 300.00176 * 10 8 7 33 33 H 1.09000 * 109.47494 * 59.99882 * 10 8 7 34 34 H 1.08999 * 109.47462 * 179.97438 * 10 8 7 35 35 H 1.08997 * 109.47910 * 55.99364 * 11 8 7 36 36 H 1.09003 * 109.47242 * 175.99427 * 11 8 7 37 37 H 0.96999 * 119.99873 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.46190 * 301.72219 * 20 7 6 39 39 H 1.09003 * 109.45651 * 181.75288 * 20 7 6 40 40 H 1.08997 * 109.50705 * 180.87552 * 21 20 7 41 41 H 1.09007 * 109.49928 * 60.76174 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5058 0.0008 5 6 4.3771 0.8495 1.3124 6 6 5.9031 0.7352 1.3332 7 7 6.4971 2.0725 1.2109 8 6 7.9568 2.0165 1.3659 9 1 8.3822 2.9984 1.1589 10 6 8.5348 0.9933 0.3862 11 6 8.3020 1.6027 2.7979 12 6 7.8185 2.6601 3.7567 13 1 7.3149 3.5391 3.3822 14 6 8.0189 2.5055 5.1120 15 7 8.6317 1.4348 5.5681 16 14 7.4189 3.8157 6.3005 17 1 6.7647 4.9111 5.5405 18 1 6.4419 3.2172 7.2452 19 1 8.5726 4.3603 7.0606 20 6 6.1270 2.7035 -0.0624 21 6 4.6077 2.8765 -0.1249 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 4.2328 0.8772 -0.8392 28 1 4.0463 1.4591 2.1533 29 1 3.9366 -0.1448 1.3876 30 1 6.2321 0.1140 0.5001 31 1 6.2204 0.2812 2.2720 32 1 8.1093 0.0113 0.5933 33 1 8.2888 1.2879 -0.6340 34 1 9.6179 0.9519 0.5008 35 1 7.8176 0.6540 3.0289 36 1 9.3821 1.4920 2.8938 37 1 8.7730 1.3262 6.5216 38 1 6.4550 2.0731 -0.8890 39 1 6.6070 3.6793 -0.1371 40 1 4.3320 3.3306 -1.0766 41 1 4.2806 3.5181 0.6934 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709998870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:25 Heat of formation + Delta-G solvation = -19.410575 kcal Electronic energy + Delta-G solvation = -17884.717212 eV Core-core repulsion = 15310.839360 eV Total energy + Delta-G solvation = -2573.877852 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.94599 -34.87292 -32.95024 -32.43547 -30.63506 -29.60623 -27.29429 -24.51010 -23.63482 -22.80495 -22.58700 -19.98312 -18.68272 -16.41459 -16.14589 -15.58240 -14.92429 -14.81181 -14.54250 -14.31273 -14.02586 -13.64266 -13.50617 -12.73702 -12.48270 -12.38710 -12.12138 -11.84125 -11.78158 -11.50919 -11.44622 -11.16671 -10.94142 -10.86301 -10.56596 -10.43961 -10.34454 -10.18369 -9.84246 -9.66081 -9.14419 -8.93725 -8.24593 -7.65298 -7.45134 -5.87464 -3.84900 1.68990 2.61475 3.39786 3.47452 3.53446 4.49556 4.58868 4.77460 4.80989 4.87778 4.90144 5.21436 5.28788 5.47982 5.49831 5.54814 5.61650 5.63188 5.70666 5.76900 5.82682 5.88504 5.91494 5.94792 5.99186 6.03518 6.21905 6.33449 6.41231 6.54416 6.61634 6.72040 6.98596 7.54352 7.68608 7.91939 8.02729 8.14096 8.59802 9.21556 9.77059 11.24605 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.005514 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.394375 B = 5077.029359 C = 5734.673842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 S -0.274 6.274 4 C -0.043 4.043 5 C -0.109 4.109 6 C 0.060 3.940 7 N -0.509 5.509 8 C 0.087 3.913 9 H 0.070 0.930 10 C -0.184 4.184 11 C 0.030 3.970 12 C -0.488 4.488 13 H 0.061 0.939 14 C 0.050 3.950 15 N -0.905 5.905 16 Si 0.888 3.112 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.288 1.288 20 C 0.059 3.941 21 C -0.094 4.094 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.023 0.977 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.256 0.744 38 H 0.025 0.975 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.765 -2.898 -13.183 17.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.238 4.238 3 S -0.045 6.045 4 C -0.172 4.172 5 C -0.148 4.148 6 C -0.070 4.070 7 N -0.232 5.232 8 C -0.021 4.021 9 H 0.088 0.912 10 C -0.243 4.243 11 C -0.007 4.007 12 C -0.526 4.526 13 H 0.080 0.920 14 C -0.149 4.149 15 N -0.546 5.546 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.214 1.214 20 C -0.071 4.071 21 C -0.133 4.133 22 H 0.083 0.917 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.559 -1.744 -12.664 17.235 hybrid contribution 0.754 -1.061 0.071 1.303 sum -10.805 -2.804 -12.594 16.829 Atomic orbital electron populations 1.21504 0.92521 1.02249 1.03070 1.23267 0.99862 0.95879 1.04763 1.86794 1.07115 1.12574 1.97990 1.23238 0.91408 1.01378 1.01194 1.21917 0.96526 0.99947 0.96457 1.22082 0.92746 0.90600 1.01541 1.62024 1.10781 1.19828 1.30602 1.21920 0.84836 0.97407 0.97944 0.91193 1.22525 1.01658 1.00982 0.99100 1.19202 0.96291 0.97051 0.88167 1.21211 1.35271 1.05459 0.90686 0.92038 1.24998 0.95798 0.95585 0.98510 1.69976 1.43666 1.27526 1.13425 0.86589 0.78307 0.82212 0.81206 1.19736 1.21347 1.21444 1.22057 0.94155 0.99567 0.91347 1.21406 0.94943 0.94380 1.02547 0.91660 0.91918 0.91385 0.89976 0.90551 0.90407 0.89556 0.92372 0.95912 0.89028 0.92906 0.94233 0.92530 0.96361 0.96376 0.93423 0.95716 0.90671 0.91453 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.92 37.16 0.37 -0.80 16 2 C -0.09 -0.92 6.37 37.16 0.24 -0.68 16 3 S -0.27 -3.57 21.15 -107.50 -2.27 -5.85 16 4 C -0.04 -0.59 2.72 -26.61 -0.07 -0.66 16 5 C -0.11 -1.64 5.26 -26.65 -0.14 -1.78 16 6 C 0.06 1.03 4.53 -3.83 -0.02 1.02 16 7 N -0.51 -9.42 4.29 -226.69 -0.97 -10.40 16 8 C 0.09 1.73 2.26 -67.71 -0.15 1.58 16 9 H 0.07 1.42 7.97 -51.93 -0.41 1.01 16 10 C -0.18 -3.10 8.44 37.16 0.31 -2.79 16 11 C 0.03 0.75 4.37 -27.88 -0.12 0.63 16 12 C -0.49 -13.58 8.81 -34.44 -0.30 -13.88 16 13 H 0.06 1.72 7.74 -52.48 -0.41 1.32 16 14 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 15 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 16 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 C 0.06 0.90 5.14 -3.84 -0.02 0.88 16 21 C -0.09 -1.31 5.39 -26.65 -0.14 -1.45 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.85 7.23 -51.92 -0.38 0.47 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.06 0.78 7.06 -51.92 -0.37 0.42 16 30 H 0.02 0.37 6.57 -51.93 -0.34 0.02 16 31 H 0.09 1.83 6.17 -51.93 -0.32 1.51 16 32 H 0.05 0.89 6.46 -51.93 -0.34 0.55 16 33 H 0.04 0.59 6.84 -51.93 -0.36 0.24 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.48 6.28 -51.93 -0.33 0.16 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.02 0.36 6.90 -51.92 -0.36 0.00 16 39 H 0.07 1.13 8.01 -51.93 -0.42 0.71 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -29.41 325.21 -10.16 -39.56 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.38 Total: -2.27 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -0.15 Total: -16.60 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.24 Total: -36.86 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.27 Total: -5.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.41 -10.16 -39.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.154 kcal (2) G-P(sol) polarization free energy of solvation -29.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds