Wall clock time and date at job start Mon Mar 30 2020 06:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81401 * 109.47248 * 2 1 4 4 C 1.81401 * 103.00003 * 179.97438 * 3 2 1 5 5 C 1.53120 * 109.52109 * 294.68070 * 4 3 2 6 6 C 1.53041 * 109.27648 * 182.43851 * 5 4 3 7 7 N 1.46847 * 109.52130 * 59.18200 * 6 5 4 8 8 C 1.46900 * 111.00083 * 174.15800 * 7 6 5 9 9 H 1.08993 * 109.47080 * 173.60210 * 8 7 6 10 10 C 1.52999 * 109.46906 * 53.59934 * 8 7 6 11 11 C 1.52998 * 109.46989 * 293.60386 * 8 7 6 12 12 C 1.50704 * 109.47248 * 295.99245 * 11 8 7 13 13 H 1.08003 * 119.99671 * 0.02562 * 12 11 8 14 14 C 1.37872 * 120.00588 * 180.02562 * 12 11 8 15 15 N 1.31519 * 119.99490 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00379 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47067 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47425 * 119.99837 * 16 14 12 19 19 H 1.48501 * 109.47170 * 239.99739 * 16 14 12 20 20 C 1.46841 * 111.19722 * 298.25901 * 7 6 5 21 21 C 1.53038 * 109.52800 * 61.74038 * 20 7 6 22 22 H 1.09003 * 109.47170 * 300.00288 * 1 2 3 23 23 H 1.09001 * 109.46952 * 59.99846 * 1 2 3 24 24 H 1.08992 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46918 * 119.99647 * 2 1 3 26 26 H 1.08994 * 109.47381 * 239.99769 * 2 1 3 27 27 H 1.08998 * 109.52104 * 54.86793 * 4 3 2 28 28 H 1.09000 * 109.50710 * 302.38600 * 5 4 3 29 29 H 1.09007 * 109.50519 * 62.49977 * 5 4 3 30 30 H 1.09001 * 109.46108 * 299.16536 * 6 5 4 31 31 H 1.09003 * 109.45741 * 179.19852 * 6 5 4 32 32 H 1.09005 * 109.47085 * 300.00176 * 10 8 7 33 33 H 1.09000 * 109.47494 * 59.99882 * 10 8 7 34 34 H 1.08999 * 109.47462 * 179.97438 * 10 8 7 35 35 H 1.08997 * 109.47910 * 55.99364 * 11 8 7 36 36 H 1.09003 * 109.47242 * 175.99427 * 11 8 7 37 37 H 0.96999 * 119.99873 * 179.97438 * 15 14 12 38 38 H 1.09008 * 109.46190 * 301.72219 * 20 7 6 39 39 H 1.09003 * 109.45651 * 181.75288 * 20 7 6 40 40 H 1.08997 * 109.50705 * 180.87552 * 21 20 7 41 41 H 1.09007 * 109.49928 * 60.76174 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5058 0.0008 5 6 4.3771 0.8495 1.3124 6 6 5.9031 0.7352 1.3332 7 7 6.4971 2.0725 1.2109 8 6 7.9568 2.0165 1.3659 9 1 8.3822 2.9984 1.1589 10 6 8.5348 0.9933 0.3862 11 6 8.3020 1.6027 2.7979 12 6 7.8185 2.6601 3.7567 13 1 7.3149 3.5391 3.3822 14 6 8.0189 2.5055 5.1120 15 7 8.6317 1.4348 5.5681 16 14 7.4189 3.8157 6.3005 17 1 6.7647 4.9111 5.5405 18 1 6.4419 3.2172 7.2452 19 1 8.5726 4.3603 7.0606 20 6 6.1270 2.7035 -0.0624 21 6 4.6077 2.8765 -0.1249 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 4.2328 0.8772 -0.8392 28 1 4.0463 1.4591 2.1533 29 1 3.9366 -0.1448 1.3876 30 1 6.2321 0.1140 0.5001 31 1 6.2204 0.2812 2.2720 32 1 8.1093 0.0113 0.5933 33 1 8.2888 1.2879 -0.6340 34 1 9.6179 0.9519 0.5008 35 1 7.8176 0.6540 3.0289 36 1 9.3821 1.4920 2.8938 37 1 8.7730 1.3262 6.5216 38 1 6.4550 2.0731 -0.8890 39 1 6.6070 3.6793 -0.1371 40 1 4.3320 3.3306 -1.0766 41 1 4.2806 3.5181 0.6934 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709998870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:25 Heat of formation + Delta-G solvation = -35.591108 kcal Electronic energy + Delta-G solvation = -17885.418853 eV Core-core repulsion = 15310.839360 eV Total energy + Delta-G solvation = -2574.579493 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.32035 -36.38571 -34.48210 -33.69070 -31.90577 -31.13631 -29.12490 -25.80813 -25.06744 -24.16509 -23.85487 -21.37012 -20.12254 -18.33648 -17.54706 -16.82907 -16.51510 -15.91340 -15.77883 -15.60668 -15.26428 -15.00843 -14.78277 -14.33971 -13.83921 -13.65133 -13.45054 -13.25387 -13.06396 -12.92603 -12.78892 -12.61441 -12.36723 -12.31305 -12.12971 -11.94113 -11.81876 -11.65578 -11.21576 -11.06284 -11.01140 -10.63400 -10.46417 -8.88577 -8.63927 -8.09180 -6.13098 0.72834 1.40604 1.42359 1.55078 1.65886 2.48055 3.10716 3.28126 3.70700 3.73767 4.03050 4.08042 4.12708 4.17706 4.34643 4.38546 4.42024 4.50756 4.52122 4.61866 4.67988 4.73692 4.80901 4.87395 4.91931 4.95214 5.00199 5.13895 5.17199 5.21534 5.22663 5.24769 5.39717 5.52156 5.72616 5.91628 6.34332 6.48614 6.56424 7.01143 7.52750 9.03036 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.005514 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.394375 B = 5077.029359 C = 5734.673842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 S -0.303 6.303 4 C -0.035 4.035 5 C -0.101 4.101 6 C 0.065 3.935 7 N -0.533 5.533 8 C 0.095 3.905 9 H 0.065 0.935 10 C -0.173 4.173 11 C 0.036 3.964 12 C -0.495 4.495 13 H 0.056 0.944 14 C -0.004 4.004 15 N -0.940 5.940 16 Si 0.953 3.047 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.281 1.281 20 C 0.061 3.939 21 C -0.088 4.088 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.056 0.944 35 H -0.003 1.003 36 H -0.009 1.009 37 H 0.258 0.742 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.044 -2.819 -14.887 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.231 4.231 3 S -0.074 6.074 4 C -0.163 4.163 5 C -0.140 4.140 6 C -0.064 4.064 7 N -0.257 5.257 8 C -0.014 4.014 9 H 0.084 0.916 10 C -0.232 4.232 11 C -0.001 4.001 12 C -0.534 4.534 13 H 0.075 0.925 14 C -0.200 4.200 15 N -0.583 5.583 16 Si 0.779 3.221 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.207 1.207 20 C -0.068 4.068 21 C -0.127 4.127 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.015 0.985 36 H 0.010 0.990 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.844 -1.654 -14.383 19.354 hybrid contribution 1.116 -1.118 0.597 1.689 sum -11.727 -2.773 -13.786 18.311 Atomic orbital electron populations 1.21516 0.91274 1.03530 1.02783 1.23373 1.00817 0.93494 1.05374 1.86930 1.06778 1.15693 1.98010 1.23099 0.91788 1.01042 1.00385 1.21809 0.94971 1.00592 0.96665 1.21970 0.94052 0.90161 1.00253 1.61893 1.09693 1.20822 1.33298 1.21609 0.86439 0.97908 0.95401 0.91650 1.22379 1.01419 0.99819 0.99551 1.19056 0.94115 0.95492 0.91442 1.21516 1.34639 1.05739 0.91485 0.92530 1.25803 0.96106 0.97639 1.00407 1.70096 1.45014 1.29358 1.13807 0.85576 0.77887 0.79691 0.78947 1.19094 1.21063 1.20750 1.22097 0.95041 0.99590 0.90068 1.21352 0.94002 0.94506 1.02837 0.92433 0.91735 0.89235 0.90073 0.89164 0.88811 0.92293 0.90727 0.94095 0.92770 0.93023 0.91441 0.92514 0.98518 0.99047 0.93348 0.93838 0.90511 0.89255 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.92 71.98 0.71 -1.26 16 2 C -0.08 -1.50 6.37 71.98 0.46 -1.04 16 3 S -0.30 -7.38 21.15 -56.49 -1.20 -8.58 16 4 C -0.03 -0.86 2.72 30.67 0.08 -0.78 16 5 C -0.10 -2.96 5.26 30.65 0.16 -2.80 16 6 C 0.07 2.23 4.53 86.33 0.39 2.62 16 7 N -0.53 -19.50 4.29 -871.11 -3.74 -23.24 16 8 C 0.09 3.78 2.26 44.91 0.10 3.88 16 9 H 0.07 2.65 7.97 -2.39 -0.02 2.63 16 10 C -0.17 -5.59 8.44 71.98 0.61 -4.98 16 11 C 0.04 1.87 4.37 29.85 0.13 2.00 16 12 C -0.50 -28.23 8.81 25.60 0.23 -28.01 16 13 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 14 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 15 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 16 Si 0.95 46.06 29.54 68.60 2.03 48.08 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 19 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 20 C 0.06 1.75 5.14 86.33 0.44 2.19 16 21 C -0.09 -2.30 5.39 30.64 0.17 -2.13 16 22 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 25 H 0.08 1.50 7.23 -2.39 -0.02 1.48 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 27 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 1.91 7.06 -2.38 -0.02 1.90 16 30 H 0.04 1.24 6.57 -2.39 -0.02 1.22 16 31 H 0.05 2.24 6.17 -2.39 -0.01 2.23 16 32 H 0.05 1.67 6.46 -2.38 -0.02 1.66 16 33 H 0.07 1.81 6.84 -2.39 -0.02 1.80 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.00 -0.19 6.28 -2.39 -0.02 -0.21 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.04 1.09 6.90 -2.38 -0.02 1.08 16 39 H 0.08 2.16 8.01 -2.39 -0.02 2.14 16 40 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -64.20 325.21 2.29 -61.91 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.97 Total: 9.53 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 3.94 Total: -30.07 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -3.45 Total: -80.88 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: -7.38 SS G_CDS: -1.20 Total: -8.58 kcal Total: -64.20 2.29 -61.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.321 kcal (2) G-P(sol) polarization free energy of solvation -64.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds