Wall clock time and date at job start Mon Mar 30 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 S 1.81396 * 109.46777 * 2 1 4 4 C 1.81408 * 102.99787 * 179.97438 * 3 2 1 5 5 C 1.53118 * 109.51924 * 294.68119 * 4 3 2 6 6 C 1.53046 * 109.27464 * 182.43861 * 5 4 3 7 7 N 1.46846 * 109.52133 * 59.17988 * 6 5 4 8 8 C 1.46902 * 110.99774 * 174.15769 * 7 6 5 9 9 H 1.09000 * 109.47001 * 312.95256 * 8 7 6 10 10 C 1.53002 * 109.46950 * 72.95680 * 8 7 6 11 11 C 1.53003 * 109.46964 * 192.95361 * 8 7 6 12 12 C 1.50705 * 109.46935 * 63.57911 * 11 8 7 13 13 H 1.08001 * 119.99921 * 5.07929 * 12 11 8 14 14 C 1.37872 * 120.00045 * 185.08612 * 12 11 8 15 15 N 1.31523 * 119.99724 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00255 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46883 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47207 * 119.99728 * 16 14 12 19 19 H 1.48504 * 109.46963 * 240.00109 * 16 14 12 20 20 C 1.46846 * 111.19776 * 298.25706 * 7 6 5 21 21 C 1.53031 * 109.52544 * 61.74458 * 20 7 6 22 22 H 1.08998 * 109.46519 * 60.00309 * 1 2 3 23 23 H 1.08997 * 109.46539 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47331 * 300.00144 * 1 2 3 25 25 H 1.08998 * 109.46519 * 119.99691 * 2 1 3 26 26 H 1.09003 * 109.47205 * 239.99593 * 2 1 3 27 27 H 1.09005 * 109.51938 * 54.86901 * 4 3 2 28 28 H 1.09002 * 109.50474 * 302.38047 * 5 4 3 29 29 H 1.09002 * 109.50605 * 62.50666 * 5 4 3 30 30 H 1.08995 * 109.46414 * 299.16501 * 6 5 4 31 31 H 1.09000 * 109.46167 * 179.19141 * 6 5 4 32 32 H 1.09004 * 109.46925 * 59.99757 * 10 8 7 33 33 H 1.08998 * 109.46787 * 179.97438 * 10 8 7 34 34 H 1.08996 * 109.47077 * 299.99707 * 10 8 7 35 35 H 1.09001 * 109.46957 * 183.57573 * 11 8 7 36 36 H 1.08994 * 109.47464 * 303.58102 * 11 8 7 37 37 H 0.96999 * 119.99773 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.45991 * 301.72251 * 20 7 6 39 39 H 1.09006 * 109.45721 * 181.75817 * 20 7 6 40 40 H 1.08997 * 109.50750 * 180.88202 * 21 20 7 41 41 H 1.09002 * 109.50355 * 60.76048 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5058 0.0008 5 6 4.3771 0.8496 1.3124 6 6 5.9031 0.7353 1.3332 7 7 6.4970 2.0727 1.2108 8 6 7.9568 2.0166 1.3659 9 1 8.2066 1.4105 2.2367 10 6 8.5789 1.3931 0.1149 11 6 8.5042 3.4327 1.5561 12 6 7.9593 4.0143 2.8352 13 1 7.3561 3.4046 3.4917 14 6 8.2306 5.3246 3.1671 15 7 8.9653 6.0669 2.3678 16 14 7.5545 6.0458 4.7522 17 1 6.7642 5.0126 5.4685 18 1 8.6797 6.4933 5.6118 19 1 6.6817 7.2049 4.4359 20 6 6.1269 2.7036 -0.0625 21 6 4.6077 2.8767 -0.1250 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8933 -0.5138 0.8900 26 1 1.8935 -0.5139 -0.8900 27 1 4.2328 0.8772 -0.8392 28 1 4.0463 1.4593 2.1533 29 1 3.9367 -0.1447 1.3875 30 1 6.2322 0.1142 0.5002 31 1 6.2205 0.2815 2.2720 32 1 8.3290 1.9993 -0.7559 33 1 9.6621 1.3519 0.2298 34 1 8.1890 0.3843 -0.0206 35 1 9.5924 3.3976 1.6076 36 1 8.2001 4.0558 0.7152 37 1 9.1565 6.9887 2.6015 38 1 6.4550 2.0732 -0.8890 39 1 6.6070 3.6794 -0.1373 40 1 4.3319 3.3306 -1.0768 41 1 4.2805 3.5182 0.6932 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709998874.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:28 Heat of formation + Delta-G solvation = -35.574921 kcal Electronic energy + Delta-G solvation = -17866.758948 eV Core-core repulsion = 15292.180157 eV Total energy + Delta-G solvation = -2574.578791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31394 -36.38708 -34.47483 -33.67220 -31.88914 -31.17323 -29.11509 -25.77789 -24.80694 -24.69845 -23.56993 -21.39814 -20.11866 -18.33702 -17.53589 -16.88538 -16.51109 -15.83708 -15.76591 -15.59401 -15.31530 -14.96694 -14.79028 -14.35067 -13.82177 -13.65242 -13.38173 -13.32320 -13.04455 -12.97201 -12.77430 -12.56409 -12.35747 -12.31772 -12.16444 -11.87731 -11.83542 -11.62677 -11.35566 -11.06510 -10.88127 -10.65276 -10.46366 -8.87813 -8.64414 -8.08579 -6.12357 0.72569 1.40683 1.42531 1.54854 1.68162 2.48332 3.10642 3.28892 3.70455 3.73860 4.04977 4.08303 4.14173 4.17285 4.34100 4.38782 4.41366 4.51568 4.53200 4.62316 4.67829 4.74385 4.79500 4.88218 4.92742 4.95128 4.99493 5.12903 5.17474 5.22169 5.24234 5.25727 5.39953 5.52089 5.72280 5.91654 6.34330 6.48872 6.57000 7.01389 7.53145 9.03677 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.023091 B = 0.005343 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.327801 B = 5239.399329 C = 5911.262000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 S -0.312 6.312 4 C -0.033 4.033 5 C -0.100 4.100 6 C 0.059 3.941 7 N -0.533 5.533 8 C 0.095 3.905 9 H 0.065 0.935 10 C -0.173 4.173 11 C 0.036 3.964 12 C -0.494 4.494 13 H 0.055 0.945 14 C -0.004 4.004 15 N -0.940 5.940 16 Si 0.952 3.048 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.285 1.285 20 C 0.069 3.931 21 C -0.089 4.089 22 H 0.060 0.940 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.066 0.934 35 H -0.010 1.010 36 H -0.002 1.002 37 H 0.258 0.742 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.008 -15.156 -6.441 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.227 4.227 3 S -0.083 6.083 4 C -0.161 4.161 5 C -0.140 4.140 6 C -0.071 4.071 7 N -0.257 5.257 8 C -0.013 4.013 9 H 0.084 0.916 10 C -0.232 4.232 11 C -0.002 4.002 12 C -0.532 4.532 13 H 0.074 0.926 14 C -0.200 4.200 15 N -0.583 5.583 16 Si 0.779 3.221 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.211 1.211 20 C -0.060 4.060 21 C -0.128 4.128 22 H 0.079 0.921 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.008 0.992 36 H 0.016 0.984 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.795 -13.782 -6.084 20.427 hybrid contribution 1.135 -0.467 0.153 1.237 sum -12.660 -14.249 -5.931 19.962 Atomic orbital electron populations 1.21522 0.91448 1.03556 1.02675 1.23369 1.00632 0.93079 1.05604 1.87118 1.06962 1.16184 1.98061 1.23079 0.91577 1.00247 1.01242 1.21835 0.95068 1.00920 0.96140 1.22123 0.94266 0.89557 1.01126 1.61882 1.09779 1.20261 1.33776 1.21610 0.86173 0.97128 0.96414 0.91634 1.22380 1.01386 1.00561 0.98826 1.19055 0.93624 0.91717 0.95763 1.21491 1.29526 0.96298 1.05916 0.92629 1.25796 0.96101 0.97999 1.00062 1.70097 1.40898 1.08316 1.38990 0.85580 0.78066 0.78262 0.80212 1.19034 1.20737 1.21140 1.21931 0.94659 0.99111 0.90334 1.21318 0.94099 0.95157 1.02223 0.92133 0.89020 0.92383 0.89369 0.89237 0.88795 0.91933 0.89568 0.93993 0.90744 0.92994 0.92456 0.91485 0.99197 0.98362 0.93367 0.93815 0.92723 0.90398 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.92 71.99 0.71 -1.13 16 2 C -0.08 -1.30 6.37 71.99 0.46 -0.84 16 3 S -0.31 -7.68 21.15 -56.49 -1.20 -8.87 16 4 C -0.03 -0.83 2.72 30.67 0.08 -0.74 16 5 C -0.10 -2.52 5.26 30.65 0.16 -2.36 16 6 C 0.06 1.65 5.18 86.33 0.45 2.10 16 7 N -0.53 -19.59 4.26 -871.09 -3.71 -23.30 16 8 C 0.09 3.79 2.26 44.92 0.10 3.89 16 9 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 10 C -0.17 -5.58 8.40 71.98 0.60 -4.98 16 11 C 0.04 1.85 4.40 29.85 0.13 1.98 16 12 C -0.49 -28.23 8.80 25.60 0.23 -28.00 16 13 H 0.06 3.16 7.75 -2.91 -0.02 3.14 16 14 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 15 N -0.94 -58.24 13.29 21.45 0.28 -57.96 16 16 Si 0.95 46.24 29.54 68.60 2.03 48.26 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 C 0.07 2.40 4.47 86.32 0.39 2.78 16 21 C -0.09 -2.74 5.39 30.64 0.17 -2.58 16 22 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.09 1.34 7.23 -2.39 -0.02 1.32 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.09 1.69 7.06 -2.39 -0.02 1.67 16 30 H 0.04 1.04 6.98 -2.39 -0.02 1.02 16 31 H 0.07 2.07 7.98 -2.39 -0.02 2.05 16 32 H 0.05 1.69 6.44 -2.38 -0.02 1.68 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.79 6.93 -2.39 -0.02 1.78 16 35 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 36 H 0.00 -0.11 6.39 -2.39 -0.02 -0.12 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.04 1.34 6.57 -2.39 -0.02 1.32 16 39 H 0.05 2.29 6.28 -2.38 -0.01 2.28 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -64.94 325.45 2.31 -62.63 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.97 Total: 8.87 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 3.94 Total: -29.63 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -3.42 Total: -81.26 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.20 Total: -8.87 kcal Total: -64.94 2.31 -62.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998874.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.055 kcal (2) G-P(sol) polarization free energy of solvation -64.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds