Wall clock time and date at job start Mon Mar 30 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.52996 * 109.47022 * 293.95609 * 3 2 1 5 5 C 1.53007 * 109.46799 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46794 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47005 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99976 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00275 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99768 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00207 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46701 * 89.99968 * 11 9 7 13 13 H 1.48494 * 109.47041 * 210.00085 * 11 9 7 14 14 H 1.48500 * 109.46992 * 330.00286 * 11 9 7 15 15 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 16 16 C 1.53004 * 109.46619 * 66.04574 * 15 2 1 17 17 H 1.08998 * 109.60137 * 305.32033 * 16 15 2 18 18 C 1.52948 * 109.59967 * 184.99994 * 16 15 2 19 19 C 1.53707 * 112.48833 * 209.97041 * 18 16 15 20 20 S 1.83395 * 104.97178 * 2.82495 * 19 18 16 21 21 C 1.55150 * 109.60235 * 65.46735 * 16 15 2 22 22 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 23 23 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 24 24 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 26 26 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 27 27 H 1.08997 * 109.47190 * 299.99825 * 4 3 2 28 28 H 1.09001 * 109.47349 * 60.00258 * 4 3 2 29 29 H 1.08997 * 109.46999 * 299.99810 * 5 4 3 30 30 H 1.08997 * 109.47321 * 60.00382 * 5 4 3 31 31 H 1.08997 * 109.47163 * 299.99673 * 6 5 4 32 32 H 1.09001 * 109.47382 * 60.00109 * 6 5 4 33 33 H 0.96998 * 119.99904 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47410 * 186.04624 * 15 2 1 35 35 H 1.08999 * 109.47216 * 306.04953 * 15 2 1 36 36 H 1.08991 * 108.88917 * 330.76537 * 18 16 15 37 37 H 1.09004 * 108.88445 * 89.32190 * 18 16 15 38 38 H 1.08994 * 110.34182 * 121.70238 * 19 18 16 39 39 H 1.09001 * 110.33700 * 243.95621 * 19 18 16 40 40 H 1.09004 * 111.12973 * 279.27311 * 21 16 15 41 41 H 1.08997 * 111.13380 * 43.45728 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4857 -1.3184 6 6 1.8156 4.1719 -2.6365 7 6 2.3556 5.5789 -2.6365 8 1 2.9043 5.9466 -1.7821 9 6 2.1500 6.3963 -3.7276 10 7 1.4822 5.9482 -4.7683 11 14 2.8200 8.1400 -3.7279 12 1 4.1917 8.1430 -4.2967 13 1 1.9406 9.0080 -4.5515 14 1 2.8603 8.6549 -2.3356 15 6 1.9956 -0.7659 1.1375 16 6 1.6315 -2.2426 0.9702 17 1 0.5542 -2.3408 0.8373 18 6 2.0687 -3.0226 2.2111 19 6 2.4325 -4.4812 1.8907 20 16 2.2534 -4.6255 0.0713 21 6 2.3603 -2.8209 -0.2714 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.5611 1.9274 0.8309 26 1 3.0797 1.3445 0.1082 27 1 2.0657 1.5016 -2.1491 28 1 0.5471 2.0845 -1.4264 29 1 1.7462 4.0418 -0.4875 30 1 3.2645 3.4583 -1.2105 31 1 2.2492 3.6160 -3.4677 32 1 0.7312 4.1994 -2.7440 33 1 1.3372 6.5234 -5.5358 34 1 3.0798 -0.6610 1.1755 35 1 1.5612 -0.3873 2.0628 36 1 2.9369 -2.5305 2.6494 37 1 1.2557 -3.0151 2.9371 38 1 3.4603 -4.6894 2.1880 39 1 1.7462 -5.1621 2.3941 40 1 1.8344 -2.5637 -1.1909 41 1 3.3978 -2.4887 -0.3082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718158024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:02 Heat of formation + Delta-G solvation = -26.710187 kcal Electronic energy + Delta-G solvation = -16875.954062 eV Core-core repulsion = 14301.759675 eV Total energy + Delta-G solvation = -2574.194387 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.68368 -36.15277 -34.16081 -32.21081 -30.27738 -28.52819 -27.46453 -25.94439 -24.40459 -22.56005 -20.69482 -20.18594 -19.94827 -16.83307 -16.41139 -16.14451 -15.60310 -15.14029 -14.67990 -14.45341 -14.19828 -14.00393 -13.52577 -13.08255 -12.54895 -12.32397 -12.14782 -12.00942 -11.88461 -11.76740 -11.56972 -11.49687 -11.28080 -10.95725 -10.73243 -10.49877 -10.46484 -10.35315 -10.10384 -9.60567 -9.25098 -8.99766 -8.34793 -8.31612 -7.92929 -5.97191 -3.99425 1.65208 2.13426 3.32979 3.39029 3.42309 3.77925 4.24665 4.36674 4.48034 4.64791 4.69947 4.88471 5.11375 5.15408 5.23585 5.33274 5.35642 5.37029 5.38461 5.43739 5.48991 5.58830 5.67269 5.75852 5.84667 5.89054 6.01567 6.14549 6.23968 6.52149 6.81377 6.96866 7.04124 7.06323 7.23780 7.71770 7.87763 8.03997 8.46737 9.08159 9.64402 11.14180 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.050863 B = 0.002842 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.363203 B = 9848.183280 C = 9992.787992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.541 5.541 3 C 0.057 3.943 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.022 3.978 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.063 3.937 16 C -0.090 4.090 17 H 0.088 0.912 18 C -0.125 4.125 19 C -0.066 4.066 20 S -0.318 6.318 21 C -0.039 4.039 22 H 0.076 0.924 23 H 0.023 0.977 24 H 0.065 0.935 25 H 0.030 0.970 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.061 -18.998 14.735 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.265 5.265 3 C -0.071 4.071 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.016 4.016 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.066 4.066 16 C -0.111 4.111 17 H 0.106 0.894 18 C -0.165 4.165 19 C -0.215 4.215 20 S -0.092 6.092 21 C -0.187 4.187 22 H 0.095 0.905 23 H 0.042 0.958 24 H 0.084 0.916 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.131 0.869 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.020 -20.162 13.407 24.212 hybrid contribution 0.205 2.341 1.397 2.734 sum 0.225 -17.820 14.804 23.168 Atomic orbital electron populations 1.22499 0.87608 1.01586 1.01323 1.62021 1.07958 1.14733 1.41778 1.22256 0.99680 0.86627 0.98492 1.21666 1.00867 0.96855 0.95742 1.21600 0.99322 0.92968 1.00852 1.19084 0.96678 0.94633 0.91156 1.21290 1.34723 0.98051 1.01787 0.92804 1.25036 0.95362 0.98475 0.95672 1.69970 1.41008 1.36475 1.06103 0.86613 0.78856 0.84702 0.77947 1.20666 1.21234 1.19937 1.22155 1.00408 0.91894 0.92189 1.22127 1.01591 0.94800 0.92532 0.89424 1.21985 1.02670 0.93201 0.98608 1.23864 1.04879 0.99297 0.93422 1.87941 1.96897 1.15180 1.09157 1.24340 1.04056 0.88784 1.01543 0.90511 0.95820 0.91626 0.95134 0.91080 0.91678 0.92541 0.93753 0.93498 0.96618 0.96762 0.93044 0.90496 0.94600 0.90793 0.90433 0.89337 0.88598 0.86914 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.13 60.07 0.55 0.75 16 2 N -0.54 -6.33 4.51 -242.91 -1.10 -7.42 16 3 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 4 C -0.11 -1.91 5.14 -26.73 -0.14 -2.04 16 5 C -0.11 -2.24 5.15 -26.72 -0.14 -2.38 16 6 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 11 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.06 0.59 4.15 -3.82 -0.02 0.57 16 16 C -0.09 -0.75 2.48 -89.51 -0.22 -0.97 16 17 H 0.09 0.77 6.26 -51.93 -0.33 0.45 16 18 C -0.13 -0.85 5.86 -26.39 -0.15 -1.00 16 19 C -0.07 -0.48 7.38 37.53 0.28 -0.21 16 20 S -0.32 -3.31 23.23 -107.50 -2.50 -5.81 16 21 C -0.04 -0.38 6.63 38.30 0.25 -0.12 16 22 H 0.08 0.93 6.47 -51.93 -0.34 0.59 16 23 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.07 0.63 6.20 -51.93 -0.32 0.31 16 25 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 26 H 0.07 0.94 7.93 -51.93 -0.41 0.52 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.96 6.55 -51.93 -0.34 0.62 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.08 0.70 7.91 -51.93 -0.41 0.29 16 35 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 36 H 0.07 0.45 7.80 -51.93 -0.41 0.05 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -30.44 333.23 -10.60 -41.03 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -7.58 Total: -5.07 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.16 Total: -18.00 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: -0.36 Total: -34.02 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -2.50 Total: -5.81 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.44 -10.60 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718158024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.323 kcal (2) G-P(sol) polarization free energy of solvation -30.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds