Wall clock time and date at job start Mon Mar 30 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.52996 * 109.47022 * 293.95609 * 3 2 1 5 5 C 1.53007 * 109.46799 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46794 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47005 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99976 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00275 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99768 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00207 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46701 * 89.99968 * 11 9 7 13 13 H 1.48494 * 109.47041 * 210.00085 * 11 9 7 14 14 H 1.48500 * 109.46992 * 330.00286 * 11 9 7 15 15 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 16 16 C 1.53004 * 109.46619 * 66.04574 * 15 2 1 17 17 H 1.08998 * 109.60137 * 305.32033 * 16 15 2 18 18 C 1.52948 * 109.59967 * 184.99994 * 16 15 2 19 19 C 1.53707 * 112.48833 * 209.97041 * 18 16 15 20 20 S 1.83395 * 104.97178 * 2.82495 * 19 18 16 21 21 C 1.55150 * 109.60235 * 65.46735 * 16 15 2 22 22 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 23 23 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 24 24 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 26 26 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 27 27 H 1.08997 * 109.47190 * 299.99825 * 4 3 2 28 28 H 1.09001 * 109.47349 * 60.00258 * 4 3 2 29 29 H 1.08997 * 109.46999 * 299.99810 * 5 4 3 30 30 H 1.08997 * 109.47321 * 60.00382 * 5 4 3 31 31 H 1.08997 * 109.47163 * 299.99673 * 6 5 4 32 32 H 1.09001 * 109.47382 * 60.00109 * 6 5 4 33 33 H 0.96998 * 119.99904 * 179.97438 * 10 9 7 34 34 H 1.08994 * 109.47410 * 186.04624 * 15 2 1 35 35 H 1.08999 * 109.47216 * 306.04953 * 15 2 1 36 36 H 1.08991 * 108.88917 * 330.76537 * 18 16 15 37 37 H 1.09004 * 108.88445 * 89.32190 * 18 16 15 38 38 H 1.08994 * 110.34182 * 121.70238 * 19 18 16 39 39 H 1.09001 * 110.33700 * 243.95621 * 19 18 16 40 40 H 1.09004 * 111.12973 * 279.27311 * 21 16 15 41 41 H 1.08997 * 111.13380 * 43.45728 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4857 -1.3184 6 6 1.8156 4.1719 -2.6365 7 6 2.3556 5.5789 -2.6365 8 1 2.9043 5.9466 -1.7821 9 6 2.1500 6.3963 -3.7276 10 7 1.4822 5.9482 -4.7683 11 14 2.8200 8.1400 -3.7279 12 1 4.1917 8.1430 -4.2967 13 1 1.9406 9.0080 -4.5515 14 1 2.8603 8.6549 -2.3356 15 6 1.9956 -0.7659 1.1375 16 6 1.6315 -2.2426 0.9702 17 1 0.5542 -2.3408 0.8373 18 6 2.0687 -3.0226 2.2111 19 6 2.4325 -4.4812 1.8907 20 16 2.2534 -4.6255 0.0713 21 6 2.3603 -2.8209 -0.2714 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.5611 1.9274 0.8309 26 1 3.0797 1.3445 0.1082 27 1 2.0657 1.5016 -2.1491 28 1 0.5471 2.0845 -1.4264 29 1 1.7462 4.0418 -0.4875 30 1 3.2645 3.4583 -1.2105 31 1 2.2492 3.6160 -3.4677 32 1 0.7312 4.1994 -2.7440 33 1 1.3372 6.5234 -5.5358 34 1 3.0798 -0.6610 1.1755 35 1 1.5612 -0.3873 2.0628 36 1 2.9369 -2.5305 2.6494 37 1 1.2557 -3.0151 2.9371 38 1 3.4603 -4.6894 2.1880 39 1 1.7462 -5.1621 2.3941 40 1 1.8344 -2.5637 -1.1909 41 1 3.3978 -2.4887 -0.3082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718158024.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:02 Heat of formation + Delta-G solvation = -43.621565 kcal Electronic energy + Delta-G solvation = -16876.687394 eV Core-core repulsion = 14301.759675 eV Total energy + Delta-G solvation = -2574.927720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.54044 -37.16601 -35.80986 -34.05365 -31.20799 -29.99025 -28.28072 -27.24768 -25.70473 -23.78580 -22.02997 -21.54688 -20.79621 -18.42714 -17.59182 -17.09613 -16.68996 -16.54474 -15.91928 -15.71675 -15.26157 -14.80830 -14.52758 -14.24991 -14.01291 -13.68490 -13.56314 -13.16494 -12.86514 -12.82059 -12.69077 -12.51621 -12.42143 -12.29647 -12.16908 -12.08506 -11.90844 -11.42128 -11.32692 -11.24021 -10.97467 -10.80209 -10.55328 -9.24604 -8.73709 -8.19822 -6.31389 0.95491 1.39498 1.41268 1.44505 1.52318 2.40870 2.91102 3.12927 3.59335 3.72124 4.03141 4.06065 4.13458 4.18632 4.25249 4.40681 4.46621 4.54689 4.59436 4.63650 4.68428 4.75672 4.77448 4.83867 4.88526 4.90798 4.92515 5.09856 5.12335 5.25137 5.27293 5.30827 5.39069 5.56435 5.78666 5.87547 6.11241 6.17507 6.26520 6.86581 7.38051 8.92133 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.050863 B = 0.002842 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.363203 B = 9848.183280 C = 9992.787992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.551 5.551 3 C 0.068 3.932 4 C -0.103 4.103 5 C -0.096 4.096 6 C 0.023 3.977 7 C -0.544 4.544 8 H 0.060 0.940 9 C -0.004 4.004 10 N -0.935 5.935 11 Si 0.966 3.034 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.262 1.262 15 C 0.067 3.933 16 C -0.082 4.082 17 H 0.083 0.917 18 C -0.122 4.122 19 C -0.052 4.052 20 S -0.377 6.377 21 C -0.030 4.030 22 H 0.059 0.941 23 H 0.029 0.971 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.052 0.948 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.785 -18.801 16.982 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.275 5.275 3 C -0.060 4.060 4 C -0.141 4.141 5 C -0.135 4.135 6 C -0.014 4.014 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.201 4.201 10 N -0.576 5.576 11 Si 0.790 3.210 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.186 1.186 15 C -0.062 4.062 16 C -0.102 4.102 17 H 0.102 0.898 18 C -0.161 4.161 19 C -0.200 4.200 20 S -0.151 6.151 21 C -0.178 4.178 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.747 -19.981 15.672 25.405 hybrid contribution -0.042 2.228 0.677 2.329 sum 0.705 -17.753 16.349 24.145 Atomic orbital electron populations 1.22484 0.87287 1.02367 1.00741 1.61949 1.08359 1.13702 1.43493 1.22026 1.00231 0.87554 0.96186 1.21487 1.00210 0.94801 0.97648 1.21401 0.99775 0.94719 0.97570 1.19016 0.94624 0.94378 0.93368 1.21756 1.34951 0.99305 1.02211 0.92133 1.26033 0.95503 1.03418 0.95154 1.70109 1.42213 1.38371 1.06879 0.85432 0.78283 0.78694 0.78554 1.19708 1.20730 1.18622 1.22184 1.00698 0.91831 0.91535 1.22073 1.01145 0.94347 0.92683 0.89827 1.21963 1.03786 0.92471 0.97864 1.23971 1.05956 1.00056 0.89996 1.88153 1.97043 1.16666 1.13261 1.24276 1.03980 0.87842 1.01724 0.92212 0.95252 0.90208 0.94633 0.90295 0.92831 0.93059 0.93219 0.92954 0.99368 0.99380 0.92788 0.89934 0.93486 0.89560 0.88867 0.88259 0.87396 0.88364 0.89173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.13 127.69 1.17 1.56 16 2 N -0.55 -12.03 4.51 -922.44 -4.16 -16.19 16 3 C 0.07 1.73 4.96 86.30 0.43 2.15 16 4 C -0.10 -3.48 5.14 30.60 0.16 -3.32 16 5 C -0.10 -3.96 5.15 30.60 0.16 -3.80 16 6 C 0.02 1.26 4.97 29.85 0.15 1.41 16 7 C -0.54 -31.61 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 10 N -0.94 -58.12 13.29 21.45 0.28 -57.84 16 11 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 15 C 0.07 1.07 4.15 86.30 0.36 1.43 16 16 C -0.08 -1.19 2.48 -10.07 -0.02 -1.22 16 17 H 0.08 1.31 6.26 -2.39 -0.01 1.29 16 18 C -0.12 -1.27 5.86 30.81 0.18 -1.09 16 19 C -0.05 -0.63 7.38 72.22 0.53 -0.10 16 20 S -0.38 -7.63 23.23 -56.49 -1.31 -8.94 16 21 C -0.03 -0.56 6.63 72.72 0.48 -0.08 16 22 H 0.06 1.44 6.47 -2.39 -0.02 1.42 16 23 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.08 1.42 6.20 -2.38 -0.01 1.40 16 25 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 26 H 0.08 1.91 7.93 -2.39 -0.02 1.89 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.76 6.55 -2.39 -0.02 1.75 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 32 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 33 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.08 1.26 7.91 -2.39 -0.02 1.24 16 35 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 36 H 0.09 0.73 7.80 -2.39 -0.02 0.72 16 37 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.09 1.64 8.09 -2.39 -0.02 1.63 16 Total: -1.00 -66.17 333.23 2.07 -64.10 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 0.96 Total: 6.29 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 4.28 Total: -34.18 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -3.88 Total: -74.03 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: -7.63 SS G_CDS: -1.31 Total: -8.94 kcal Total: -66.17 2.07 -64.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718158024.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.476 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds