Wall clock time and date at job start Mon Mar 30 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00207 * 2 1 4 4 C 1.52994 * 109.46964 * 293.94762 * 3 2 1 5 5 C 1.53005 * 109.47008 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46697 * 180.02562 * 5 4 3 7 7 H 1.07995 * 120.00458 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99649 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99877 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99917 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47322 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47066 * 119.99938 * 10 8 6 13 13 H 1.48500 * 109.47116 * 239.99766 * 10 8 6 14 14 C 1.46904 * 110.99895 * 123.95079 * 2 1 3 15 15 C 1.53002 * 109.47003 * 66.04487 * 14 2 1 16 16 H 1.09003 * 109.38799 * 304.80127 * 15 14 2 17 17 C 1.52581 * 109.39102 * 185.00141 * 15 14 2 18 18 C 1.52577 * 110.69350 * 169.29574 * 17 15 14 19 19 C 1.53019 * 110.00025 * 70.70304 * 18 17 15 20 20 S 1.81758 * 108.81260 * 296.94234 * 19 18 17 21 21 C 1.53101 * 109.30888 * 64.55525 * 15 14 2 22 22 H 1.09004 * 109.47423 * 296.05332 * 1 2 3 23 23 H 1.09002 * 109.47152 * 56.04544 * 1 2 3 24 24 H 1.08999 * 109.47562 * 176.04985 * 1 2 3 25 25 H 1.09001 * 109.47044 * 53.95515 * 3 2 1 26 26 H 1.08999 * 109.46946 * 173.95481 * 3 2 1 27 27 H 1.09001 * 109.47855 * 300.00257 * 4 3 2 28 28 H 1.08999 * 109.46702 * 60.00570 * 4 3 2 29 29 H 1.08997 * 109.47173 * 299.99855 * 5 4 3 30 30 H 1.08999 * 109.46899 * 60.00721 * 5 4 3 31 31 H 0.97005 * 119.99675 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.47300 * 306.04812 * 14 2 1 33 33 H 1.09002 * 109.47612 * 186.04504 * 14 2 1 34 34 H 1.09002 * 109.22622 * 289.59680 * 17 15 14 35 35 H 1.09000 * 109.22338 * 48.99821 * 17 15 14 36 36 H 1.08996 * 109.39475 * 190.80440 * 18 17 15 37 37 H 1.09005 * 109.38925 * 310.50514 * 18 17 15 38 38 H 1.08996 * 109.59306 * 177.14309 * 19 18 17 39 39 H 1.09006 * 109.59159 * 56.73564 * 19 18 17 40 40 H 1.08995 * 109.57507 * 302.92573 * 21 15 14 41 41 H 1.08997 * 109.57554 * 63.19077 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1794 3.4860 -1.3180 6 6 1.8205 4.1617 -2.6163 7 1 1.2576 3.6261 -3.3664 8 6 2.2107 5.4639 -2.8466 9 7 2.8958 6.1164 -1.9330 10 14 1.7652 6.3019 -4.4555 11 1 0.9973 5.3595 -5.3084 12 1 0.9382 7.5032 -4.1756 13 1 3.0064 6.7090 -5.1619 14 6 1.9954 -0.7659 1.1377 15 6 1.6313 -2.2426 0.9705 16 1 0.5525 -2.3376 0.8470 17 6 2.0693 -3.0159 2.2107 18 6 1.4925 -4.4284 2.1970 19 6 2.1793 -5.2636 1.1144 20 16 1.8223 -4.5273 -0.5086 21 6 2.3359 -2.8005 -0.2690 22 1 -0.3634 0.4514 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 1.5611 1.9273 0.8309 26 1 3.0797 1.3443 0.1082 27 1 2.0659 1.5014 -2.1492 28 1 0.5473 2.0844 -1.4265 29 1 1.7446 4.0417 -0.4873 30 1 3.2637 3.4592 -1.2096 31 1 3.1700 7.0327 -2.0948 32 1 1.5610 -0.3872 2.0629 33 1 3.0797 -0.6611 1.1758 34 1 3.1576 -3.0728 2.2325 35 1 1.7193 -2.4939 3.1013 36 1 1.6538 -4.8946 3.1689 37 1 0.4228 -4.3805 1.9934 38 1 1.7987 -6.2845 1.1439 39 1 3.2561 -5.2682 1.2843 40 1 2.0573 -2.2121 -1.1432 41 1 3.4156 -2.7550 -0.1269 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718292868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:19 Heat of formation + Delta-G solvation = -28.366561 kcal Electronic energy + Delta-G solvation = -17197.565326 eV Core-core repulsion = 14623.299113 eV Total energy + Delta-G solvation = -2574.266213 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.65788 -36.40628 -33.73674 -32.27691 -30.83257 -27.56501 -27.13611 -26.78486 -24.31288 -22.44635 -21.15547 -20.13865 -19.83096 -16.88665 -16.31935 -15.69875 -15.47008 -15.11038 -14.53442 -14.26024 -14.16411 -13.85178 -13.55186 -13.37399 -12.73089 -12.46541 -12.26914 -12.02731 -11.73395 -11.61487 -11.48833 -11.40176 -11.24918 -10.81898 -10.75429 -10.61587 -10.51660 -10.32828 -9.79290 -9.59458 -9.30589 -9.02117 -8.32891 -8.08964 -7.79952 -5.98127 -3.99921 1.67143 2.43679 3.32568 3.39958 3.44713 4.03590 4.38683 4.48312 4.56243 4.63410 4.77346 4.93495 5.11106 5.24906 5.30901 5.37811 5.40989 5.42407 5.54056 5.56796 5.64981 5.67094 5.72581 5.79584 5.87133 6.00147 6.02433 6.07310 6.22336 6.33597 6.71753 6.78523 7.13219 7.34631 7.38852 7.70794 7.85439 8.02635 8.46197 9.07643 9.64124 11.13389 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.043574 B = 0.003319 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.425015 B = 8434.173982 C = 8731.003142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.056 3.944 4 C -0.105 4.105 5 C 0.021 3.979 6 C -0.517 4.517 7 H 0.056 0.944 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.060 3.940 15 C -0.085 4.085 16 H 0.084 0.916 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.082 4.082 20 S -0.282 6.282 21 C -0.060 4.060 22 H 0.021 0.979 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.013 0.987 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.154 -20.903 9.783 23.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.265 5.265 3 C -0.071 4.071 4 C -0.143 4.143 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.070 4.070 15 C -0.105 4.105 16 H 0.102 0.898 17 C -0.163 4.163 18 C -0.158 4.158 19 C -0.230 4.230 20 S -0.054 6.054 21 C -0.208 4.208 22 H 0.039 0.961 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.330 -21.483 8.445 23.200 hybrid contribution 0.104 1.565 0.984 1.851 sum -2.226 -19.918 9.429 22.149 Atomic orbital electron populations 1.22465 0.87898 1.01512 1.00950 1.62043 1.07767 1.15136 1.41572 1.22303 0.99448 0.86170 0.99163 1.21654 1.00075 0.98149 0.94387 1.19078 0.96206 0.89371 0.96965 1.21297 1.34575 0.97576 1.02085 0.92617 1.25034 0.95255 0.97536 0.96744 1.69981 1.38513 1.11216 1.33953 0.86547 0.78181 0.79465 0.83889 1.19697 1.21068 1.21026 1.22171 1.00354 0.92266 0.92184 1.21396 1.01243 0.94414 0.93457 0.89760 1.21572 1.01141 0.95289 0.98340 1.21681 1.00886 0.95089 0.98176 1.23412 1.03462 1.01802 0.94373 1.86973 1.86366 1.11748 1.20362 1.23483 1.02328 0.92167 1.02842 0.96075 0.90583 0.91831 0.95379 0.91347 0.92620 0.93411 0.96887 0.96652 0.93122 0.94778 0.90817 0.91700 0.91092 0.91036 0.90671 0.88180 0.90091 0.86158 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.13 60.06 0.55 0.81 16 2 N -0.54 -7.75 4.14 -242.91 -1.01 -8.76 16 3 C 0.06 0.97 4.96 -3.83 -0.02 0.95 16 4 C -0.10 -2.18 5.08 -26.73 -0.14 -2.32 16 5 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 6 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 7 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 8 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.06 0.70 4.32 -3.82 -0.02 0.69 16 15 C -0.08 -0.84 1.96 -90.78 -0.18 -1.02 16 16 H 0.08 0.90 6.25 -51.93 -0.32 0.58 16 17 C -0.13 -1.01 4.92 -27.16 -0.13 -1.15 16 18 C -0.12 -0.87 5.74 -26.94 -0.15 -1.03 16 19 C -0.08 -0.66 6.46 37.17 0.24 -0.42 16 20 S -0.28 -3.11 22.33 -107.50 -2.40 -5.51 16 21 C -0.06 -0.66 5.64 37.21 0.21 -0.45 16 22 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.08 1.11 6.30 -51.93 -0.33 0.78 16 24 H 0.06 0.75 6.37 -51.93 -0.33 0.42 16 25 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 26 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.05 0.98 6.47 -51.93 -0.34 0.65 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.03 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 34 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 40 H 0.12 1.54 7.65 -51.93 -0.40 1.14 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -29.96 328.85 -10.48 -40.44 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -7.56 Total: -4.34 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -0.19 Total: -17.17 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.27 Total: -35.26 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.40 Total: -5.51 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.96 -10.48 -40.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718292868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.078 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds