Wall clock time and date at job start Mon Mar 30 2020 06:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46901 * 111.00207 * 2 1 4 4 C 1.52994 * 109.46964 * 293.94762 * 3 2 1 5 5 C 1.53005 * 109.47008 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46697 * 180.02562 * 5 4 3 7 7 H 1.07995 * 120.00458 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99649 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99877 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99917 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47322 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47066 * 119.99938 * 10 8 6 13 13 H 1.48500 * 109.47116 * 239.99766 * 10 8 6 14 14 C 1.46904 * 110.99895 * 123.95079 * 2 1 3 15 15 C 1.53002 * 109.47003 * 66.04487 * 14 2 1 16 16 H 1.09003 * 109.38799 * 304.80127 * 15 14 2 17 17 C 1.52581 * 109.39102 * 185.00141 * 15 14 2 18 18 C 1.52577 * 110.69350 * 169.29574 * 17 15 14 19 19 C 1.53019 * 110.00025 * 70.70304 * 18 17 15 20 20 S 1.81758 * 108.81260 * 296.94234 * 19 18 17 21 21 C 1.53101 * 109.30888 * 64.55525 * 15 14 2 22 22 H 1.09004 * 109.47423 * 296.05332 * 1 2 3 23 23 H 1.09002 * 109.47152 * 56.04544 * 1 2 3 24 24 H 1.08999 * 109.47562 * 176.04985 * 1 2 3 25 25 H 1.09001 * 109.47044 * 53.95515 * 3 2 1 26 26 H 1.08999 * 109.46946 * 173.95481 * 3 2 1 27 27 H 1.09001 * 109.47855 * 300.00257 * 4 3 2 28 28 H 1.08999 * 109.46702 * 60.00570 * 4 3 2 29 29 H 1.08997 * 109.47173 * 299.99855 * 5 4 3 30 30 H 1.08999 * 109.46899 * 60.00721 * 5 4 3 31 31 H 0.97005 * 119.99675 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.47300 * 306.04812 * 14 2 1 33 33 H 1.09002 * 109.47612 * 186.04504 * 14 2 1 34 34 H 1.09002 * 109.22622 * 289.59680 * 17 15 14 35 35 H 1.09000 * 109.22338 * 48.99821 * 17 15 14 36 36 H 1.08996 * 109.39475 * 190.80440 * 18 17 15 37 37 H 1.09005 * 109.38925 * 310.50514 * 18 17 15 38 38 H 1.08996 * 109.59306 * 177.14309 * 19 18 17 39 39 H 1.09006 * 109.59159 * 56.73564 * 19 18 17 40 40 H 1.08995 * 109.57507 * 302.92573 * 21 15 14 41 41 H 1.08997 * 109.57554 * 63.19077 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6316 2.0573 -1.3183 5 6 2.1794 3.4860 -1.3180 6 6 1.8205 4.1617 -2.6163 7 1 1.2576 3.6261 -3.3664 8 6 2.2107 5.4639 -2.8466 9 7 2.8958 6.1164 -1.9330 10 14 1.7652 6.3019 -4.4555 11 1 0.9973 5.3595 -5.3084 12 1 0.9382 7.5032 -4.1756 13 1 3.0064 6.7090 -5.1619 14 6 1.9954 -0.7659 1.1377 15 6 1.6313 -2.2426 0.9705 16 1 0.5525 -2.3376 0.8470 17 6 2.0693 -3.0159 2.2107 18 6 1.4925 -4.4284 2.1970 19 6 2.1793 -5.2636 1.1144 20 16 1.8223 -4.5273 -0.5086 21 6 2.3359 -2.8005 -0.2690 22 1 -0.3634 0.4514 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3634 -1.0252 -0.0708 25 1 1.5611 1.9273 0.8309 26 1 3.0797 1.3443 0.1082 27 1 2.0659 1.5014 -2.1492 28 1 0.5473 2.0844 -1.4265 29 1 1.7446 4.0417 -0.4873 30 1 3.2637 3.4592 -1.2096 31 1 3.1700 7.0327 -2.0948 32 1 1.5610 -0.3872 2.0629 33 1 3.0797 -0.6611 1.1758 34 1 3.1576 -3.0728 2.2325 35 1 1.7193 -2.4939 3.1013 36 1 1.6538 -4.8946 3.1689 37 1 0.4228 -4.3805 1.9934 38 1 1.7987 -6.2845 1.1439 39 1 3.2561 -5.2682 1.2843 40 1 2.0573 -2.2121 -1.1432 41 1 3.4156 -2.7550 -0.1269 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718292868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:19 Heat of formation + Delta-G solvation = -44.597976 kcal Electronic energy + Delta-G solvation = -17198.269173 eV Core-core repulsion = 14623.299113 eV Total energy + Delta-G solvation = -2574.970060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.65677 -37.44196 -35.59451 -33.66629 -32.26777 -28.72926 -28.39778 -27.86722 -25.81608 -23.74114 -22.25210 -21.44812 -20.98243 -18.47986 -17.70598 -16.84133 -16.58942 -16.41947 -15.96690 -15.42148 -15.23510 -15.08787 -14.37724 -14.32224 -14.17807 -13.75748 -13.60150 -13.25274 -13.07152 -12.94180 -12.72367 -12.53625 -12.43428 -12.29783 -12.24021 -12.04947 -11.55694 -11.49438 -11.39796 -11.28246 -10.93960 -10.56505 -10.55574 -9.24726 -8.66069 -8.20766 -6.31493 0.89564 1.39492 1.39857 1.53532 1.66595 2.40557 2.95384 3.12393 3.66978 3.82366 3.94271 4.02032 4.13075 4.19266 4.31799 4.36901 4.47522 4.56095 4.60025 4.63614 4.73707 4.75343 4.78229 4.88390 4.91576 4.95102 5.04490 5.08107 5.10792 5.16476 5.21857 5.27370 5.39652 5.52822 5.74782 5.86144 6.09447 6.19531 6.28272 6.85581 7.37769 8.91349 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.043574 B = 0.003319 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.425015 B = 8434.173982 C = 8731.003142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.547 5.547 3 C 0.069 3.931 4 C -0.090 4.090 5 C 0.026 3.974 6 C -0.542 4.542 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.062 3.938 15 C -0.075 4.075 16 H 0.079 0.921 17 C -0.122 4.122 18 C -0.115 4.115 19 C -0.071 4.071 20 S -0.327 6.327 21 C -0.051 4.051 22 H 0.026 0.974 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.049 0.951 29 H -0.010 1.010 30 H -0.008 1.008 31 H 0.264 0.736 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 -22.150 10.261 24.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.270 5.270 3 C -0.059 4.059 4 C -0.128 4.128 5 C -0.012 4.012 6 C -0.580 4.580 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.068 4.068 15 C -0.095 4.095 16 H 0.098 0.902 17 C -0.160 4.160 18 C -0.154 4.154 19 C -0.218 4.218 20 S -0.100 6.100 21 C -0.200 4.200 22 H 0.044 0.956 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.008 0.992 30 H 0.010 0.990 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.780 -22.752 8.931 24.599 hybrid contribution 0.257 1.907 0.875 2.114 sum -2.523 -20.845 9.806 23.174 Atomic orbital electron populations 1.22461 0.87209 1.02437 1.00507 1.61973 1.08439 1.13267 1.43369 1.22007 0.99492 0.87703 0.96717 1.21397 0.99724 0.95224 0.96414 1.18972 0.94670 0.92225 0.95305 1.21724 1.34832 0.98334 1.03099 0.92411 1.25984 0.94958 0.98301 1.00637 1.70103 1.39411 1.11746 1.36139 0.85401 0.78172 0.78345 0.79155 1.18688 1.20256 1.20288 1.22232 1.00383 0.92855 0.91302 1.21315 1.00768 0.93338 0.94087 0.90249 1.21556 1.01465 0.95618 0.97393 1.21662 1.00373 0.94464 0.98908 1.23506 1.04169 1.02172 0.91993 1.87124 1.86629 1.12395 1.23875 1.23356 1.02405 0.91765 1.02426 0.95565 0.92097 0.90051 0.95735 0.91410 0.93156 0.93217 0.99173 0.98973 0.92760 0.94015 0.90687 0.91288 0.90099 0.88725 0.91127 0.86869 0.89274 0.88354 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.13 127.69 1.17 1.73 16 2 N -0.55 -15.27 4.14 -922.45 -3.82 -19.09 16 3 C 0.07 2.36 4.96 86.30 0.43 2.79 16 4 C -0.09 -3.80 5.08 30.59 0.16 -3.64 16 5 C 0.03 1.39 4.97 29.85 0.15 1.54 16 6 C -0.54 -31.60 9.11 25.60 0.23 -31.36 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 9 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 C 0.06 1.35 4.32 86.30 0.37 1.72 16 15 C -0.07 -1.36 1.96 -10.90 -0.02 -1.38 16 16 H 0.08 1.55 6.25 -2.39 -0.01 1.54 16 17 C -0.12 -1.65 4.92 30.31 0.15 -1.50 16 18 C -0.12 -1.33 5.74 30.46 0.17 -1.16 16 19 C -0.07 -0.96 6.46 71.99 0.46 -0.49 16 20 S -0.33 -6.92 22.33 -56.49 -1.26 -8.18 16 21 C -0.05 -1.09 5.64 72.02 0.41 -0.68 16 22 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 23 H 0.06 1.75 6.30 -2.39 -0.02 1.74 16 24 H 0.08 1.81 6.37 -2.39 -0.02 1.79 16 25 H 0.02 0.86 8.12 -2.39 -0.02 0.84 16 26 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 2.07 6.47 -2.39 -0.02 2.05 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 31 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 32 H 0.04 0.87 8.07 -2.38 -0.02 0.85 16 33 H 0.07 1.63 7.93 -2.39 -0.02 1.61 16 34 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.08 0.97 8.05 -2.39 -0.02 0.95 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 37 H 0.07 0.92 8.06 -2.38 -0.02 0.90 16 38 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.10 2.52 7.65 -2.39 -0.02 2.50 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -64.65 328.85 2.33 -62.32 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: 0.96 Total: 7.23 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 4.14 Total: -32.05 kcal Atomic # 7 Polarization: -72.79 SS G_CDS: -3.53 Total: -76.33 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: -6.92 SS G_CDS: -1.26 Total: -8.18 kcal Total: -64.65 2.33 -62.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718292868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.726 kcal (2) G-P(sol) polarization free energy of solvation -64.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds