Wall clock time and date at job start Mon Mar 30 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46899 * 111.00003 * 2 1 4 4 C 1.52999 * 109.47331 * 66.04426 * 3 2 1 5 5 C 1.52997 * 109.47645 * 180.02562 * 4 3 2 6 6 C 1.50691 * 109.47657 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99983 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00537 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00397 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99947 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47487 * 89.99748 * 10 8 6 12 12 H 1.48499 * 109.47018 * 210.00256 * 10 8 6 13 13 H 1.48509 * 109.46647 * 329.99711 * 10 8 6 14 14 C 1.46902 * 111.00073 * 236.04674 * 2 1 3 15 15 C 1.53008 * 109.46940 * 199.80380 * 14 2 1 16 16 H 1.09004 * 109.57290 * 305.00957 * 15 14 2 17 17 C 1.53090 * 109.57416 * 184.75228 * 15 14 2 18 18 C 1.52568 * 109.96346 * 177.29850 * 17 15 14 19 19 C 1.52577 * 110.83936 * 70.48759 * 18 17 15 20 20 C 1.53103 * 109.95697 * 289.36606 * 19 18 17 21 21 S 1.81744 * 109.57642 * 65.26716 * 15 14 2 22 22 H 1.09003 * 109.47423 * 54.81208 * 1 2 3 23 23 H 1.09001 * 109.46908 * 174.81120 * 1 2 3 24 24 H 1.09004 * 109.47412 * 294.81078 * 1 2 3 25 25 H 1.09000 * 109.47383 * 306.04777 * 3 2 1 26 26 H 1.09000 * 109.47555 * 186.04416 * 3 2 1 27 27 H 1.09000 * 109.47248 * 300.00177 * 4 3 2 28 28 H 1.09000 * 109.47061 * 60.00141 * 4 3 2 29 29 H 1.09000 * 109.46761 * 300.00254 * 5 4 3 30 30 H 1.09000 * 109.46956 * 59.99855 * 5 4 3 31 31 H 0.97008 * 120.00125 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47023 * 319.80188 * 14 2 1 33 33 H 1.08997 * 109.47200 * 79.80686 * 14 2 1 34 34 H 1.09004 * 109.39341 * 297.31675 * 17 15 14 35 35 H 1.09002 * 109.39035 * 57.02063 * 17 15 14 36 36 H 1.09000 * 109.13168 * 310.15302 * 18 17 15 37 37 H 1.09005 * 109.17109 * 190.84166 * 18 17 15 38 38 H 1.09009 * 109.39131 * 169.22304 * 19 18 17 39 39 H 1.08992 * 109.31378 * 49.46713 * 19 18 17 40 40 H 1.09003 * 109.57337 * 303.22267 * 20 19 18 41 41 H 1.08996 * 109.58148 * 182.83420 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1791 3.4861 1.3180 6 6 1.8211 4.1616 2.6166 7 1 1.2587 3.6257 3.3670 8 6 2.2114 5.4637 2.8470 9 7 1.8986 6.0533 3.9801 10 14 3.1835 6.3908 1.5489 11 1 2.2462 7.0951 0.6375 12 1 4.0707 7.3820 2.2090 13 1 4.0066 5.4323 0.7683 14 6 1.9954 -0.7660 -1.1376 15 6 3.4453 -1.1656 -0.8561 16 1 4.0308 -0.2760 -0.6239 17 6 4.0339 -1.8605 -2.0866 18 6 5.5000 -2.2031 -1.8399 19 6 5.6299 -3.3274 -0.8166 20 6 5.2448 -2.8153 0.5740 21 16 3.4980 -2.3139 0.5517 22 1 -0.3634 0.5922 -0.8399 23 1 -0.3633 -1.0235 -0.0929 24 1 -0.3634 0.4312 0.9328 25 1 1.5610 1.9274 -0.8309 26 1 3.0796 1.3445 -0.1082 27 1 0.5471 2.0845 1.4265 28 1 2.0657 1.5016 2.1491 29 1 3.2633 3.4594 1.2096 30 1 1.7444 4.0417 0.4871 31 1 2.1729 6.9696 4.1420 32 1 1.3928 -1.6627 -1.2818 33 1 1.9558 -0.1529 -2.0379 34 1 3.4786 -2.7772 -2.2850 35 1 3.9554 -1.1979 -2.9486 36 1 6.0161 -1.3179 -1.4681 37 1 5.9571 -2.5173 -2.7783 38 1 6.6601 -3.6832 -0.7986 39 1 4.9686 -4.1474 -1.0961 40 1 5.8674 -1.9589 0.8331 41 1 5.3878 -3.6085 1.3078 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718325191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:15 Heat of formation + Delta-G solvation = -23.378507 kcal Electronic energy + Delta-G solvation = -17379.481830 eV Core-core repulsion = 14805.431916 eV Total energy + Delta-G solvation = -2574.049915 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.20066 -36.70212 -33.83240 -32.37155 -31.26484 -28.52306 -27.40210 -25.70006 -23.83145 -22.22476 -20.98169 -20.64487 -19.89469 -17.00078 -16.60068 -15.58362 -15.26748 -15.24123 -14.61089 -14.23832 -14.01819 -13.91468 -13.56540 -13.26230 -12.79416 -12.58392 -12.37348 -12.01869 -11.76670 -11.72257 -11.52923 -11.30755 -11.20376 -11.11424 -10.89716 -10.60374 -10.48871 -9.89576 -9.63822 -9.53680 -9.49373 -9.11567 -8.49188 -8.11397 -7.44603 -5.99434 -3.96644 1.80587 2.64350 3.32675 3.39870 3.43791 3.99534 4.48556 4.48944 4.52123 4.65224 4.85621 4.94608 5.06002 5.21753 5.31908 5.34523 5.41482 5.45227 5.50815 5.57782 5.61069 5.64105 5.73636 5.78261 5.79358 5.83858 5.92489 6.02721 6.13983 6.25475 6.61001 6.64082 6.97205 7.26877 7.30806 7.43379 7.53128 7.85657 8.60802 9.06860 9.63425 11.14272 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.004445 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.659996 B = 6297.266119 C = 6632.868576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.535 5.535 3 C 0.054 3.946 4 C -0.096 4.096 5 C -0.013 4.013 6 C -0.516 4.516 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.905 5.905 10 Si 0.880 3.120 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.072 3.928 15 C -0.048 4.048 16 H 0.089 0.911 17 C -0.117 4.117 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.099 4.099 21 S -0.221 6.221 22 H 0.021 0.979 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.014 0.986 30 H 0.007 0.993 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.263 -18.936 -14.053 24.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.258 5.258 3 C -0.073 4.073 4 C -0.134 4.134 5 C -0.051 4.051 6 C -0.554 4.554 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.545 5.545 10 Si 0.707 3.293 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.191 1.191 14 C -0.057 4.057 15 C -0.177 4.177 16 H 0.107 0.893 17 C -0.157 4.157 18 C -0.166 4.166 19 C -0.158 4.158 20 C -0.248 4.248 21 S 0.006 5.994 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.045 0.955 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.032 0.968 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.597 -19.309 -12.818 23.627 hybrid contribution 1.273 1.506 -2.082 2.868 sum 5.870 -17.802 -14.900 23.945 Atomic orbital electron populations 1.22392 0.87290 1.00892 1.01561 1.61988 1.07759 1.14810 1.41255 1.22375 0.99410 0.86499 0.99039 1.21448 1.00499 0.96695 0.94771 1.19548 0.95940 0.92255 0.97330 1.21156 1.35297 0.97790 1.01177 0.90995 1.25034 0.95700 0.97538 0.95290 1.69922 1.47187 1.13195 1.24155 0.86782 0.80573 0.79772 0.82161 1.20404 1.21425 1.19107 1.21904 0.93189 0.98180 0.92428 1.23289 0.99965 0.99424 0.95056 0.89295 1.21775 0.95960 1.01079 0.96848 1.21510 0.96574 0.98993 0.99557 1.21710 1.01955 0.98551 0.93633 1.23509 0.97098 1.04005 1.00155 1.87211 1.11440 1.56892 1.43858 0.96005 0.92075 0.90469 0.95518 0.91552 0.92888 0.91790 0.96793 0.97451 0.92826 0.90381 0.93675 0.90717 0.91066 0.91739 0.91275 0.91282 0.90823 0.90081 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.23 60.06 0.55 0.92 16 2 N -0.53 -7.93 4.42 -242.92 -1.07 -9.01 16 3 C 0.05 0.91 4.78 -3.83 -0.02 0.89 16 4 C -0.10 -1.99 5.07 -26.73 -0.14 -2.13 16 5 C -0.01 -0.31 4.04 -27.89 -0.11 -0.43 16 6 C -0.52 -15.14 9.66 -34.45 -0.33 -15.48 16 7 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.51 13.96 55.43 0.77 -27.74 16 10 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 14 C 0.07 0.88 4.40 -3.82 -0.02 0.86 16 15 C -0.05 -0.56 2.61 -26.68 -0.07 -0.63 16 16 H 0.09 1.16 6.67 -51.93 -0.35 0.82 16 17 C -0.12 -1.04 5.05 -26.91 -0.14 -1.18 16 18 C -0.13 -1.05 5.61 -27.17 -0.15 -1.20 16 19 C -0.12 -0.96 5.75 -26.89 -0.15 -1.11 16 20 C -0.10 -0.98 6.46 37.21 0.24 -0.74 16 21 S -0.22 -2.84 21.45 -107.50 -2.31 -5.15 16 22 H 0.02 0.28 8.08 -51.93 -0.42 -0.14 16 23 H 0.06 0.72 7.85 -51.93 -0.41 0.32 16 24 H 0.08 1.13 6.72 -51.93 -0.35 0.78 16 25 H 0.03 0.44 8.07 -51.93 -0.42 0.02 16 26 H 0.07 1.11 6.58 -51.93 -0.34 0.77 16 27 H 0.05 1.10 6.67 -51.93 -0.35 0.75 16 28 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 30 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 32 H 0.08 0.89 7.75 -51.93 -0.40 0.48 16 33 H 0.05 0.51 8.00 -51.93 -0.42 0.10 16 34 H 0.07 0.64 8.06 -51.93 -0.42 0.22 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 39 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -31.27 326.68 -10.38 -41.65 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -7.59 Total: -3.79 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -0.43 Total: -18.38 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.30 Total: -36.74 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.31 Total: -5.15 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.27 -10.38 -41.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718325191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.267 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds