Wall clock time and date at job start Mon Mar 30 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46899 * 111.00003 * 2 1 4 4 C 1.52999 * 109.47331 * 66.04426 * 3 2 1 5 5 C 1.52997 * 109.47645 * 180.02562 * 4 3 2 6 6 C 1.50691 * 109.47657 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99983 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00537 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00397 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99947 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47487 * 89.99748 * 10 8 6 12 12 H 1.48499 * 109.47018 * 210.00256 * 10 8 6 13 13 H 1.48509 * 109.46647 * 329.99711 * 10 8 6 14 14 C 1.46902 * 111.00073 * 236.04674 * 2 1 3 15 15 C 1.53008 * 109.46940 * 199.80380 * 14 2 1 16 16 H 1.09004 * 109.57290 * 305.00957 * 15 14 2 17 17 C 1.53090 * 109.57416 * 184.75228 * 15 14 2 18 18 C 1.52568 * 109.96346 * 177.29850 * 17 15 14 19 19 C 1.52577 * 110.83936 * 70.48759 * 18 17 15 20 20 C 1.53103 * 109.95697 * 289.36606 * 19 18 17 21 21 S 1.81744 * 109.57642 * 65.26716 * 15 14 2 22 22 H 1.09003 * 109.47423 * 54.81208 * 1 2 3 23 23 H 1.09001 * 109.46908 * 174.81120 * 1 2 3 24 24 H 1.09004 * 109.47412 * 294.81078 * 1 2 3 25 25 H 1.09000 * 109.47383 * 306.04777 * 3 2 1 26 26 H 1.09000 * 109.47555 * 186.04416 * 3 2 1 27 27 H 1.09000 * 109.47248 * 300.00177 * 4 3 2 28 28 H 1.09000 * 109.47061 * 60.00141 * 4 3 2 29 29 H 1.09000 * 109.46761 * 300.00254 * 5 4 3 30 30 H 1.09000 * 109.46956 * 59.99855 * 5 4 3 31 31 H 0.97008 * 120.00125 * 180.02562 * 9 8 6 32 32 H 1.08995 * 109.47023 * 319.80188 * 14 2 1 33 33 H 1.08997 * 109.47200 * 79.80686 * 14 2 1 34 34 H 1.09004 * 109.39341 * 297.31675 * 17 15 14 35 35 H 1.09002 * 109.39035 * 57.02063 * 17 15 14 36 36 H 1.09000 * 109.13168 * 310.15302 * 18 17 15 37 37 H 1.09005 * 109.17109 * 190.84166 * 18 17 15 38 38 H 1.09009 * 109.39131 * 169.22304 * 19 18 17 39 39 H 1.08992 * 109.31378 * 49.46713 * 19 18 17 40 40 H 1.09003 * 109.57337 * 303.22267 * 20 19 18 41 41 H 1.08996 * 109.58148 * 182.83420 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 1.3182 5 6 2.1791 3.4861 1.3180 6 6 1.8211 4.1616 2.6166 7 1 1.2587 3.6257 3.3670 8 6 2.2114 5.4637 2.8470 9 7 1.8986 6.0533 3.9801 10 14 3.1835 6.3908 1.5489 11 1 2.2462 7.0951 0.6375 12 1 4.0707 7.3820 2.2090 13 1 4.0066 5.4323 0.7683 14 6 1.9954 -0.7660 -1.1376 15 6 3.4453 -1.1656 -0.8561 16 1 4.0308 -0.2760 -0.6239 17 6 4.0339 -1.8605 -2.0866 18 6 5.5000 -2.2031 -1.8399 19 6 5.6299 -3.3274 -0.8166 20 6 5.2448 -2.8153 0.5740 21 16 3.4980 -2.3139 0.5517 22 1 -0.3634 0.5922 -0.8399 23 1 -0.3633 -1.0235 -0.0929 24 1 -0.3634 0.4312 0.9328 25 1 1.5610 1.9274 -0.8309 26 1 3.0796 1.3445 -0.1082 27 1 0.5471 2.0845 1.4265 28 1 2.0657 1.5016 2.1491 29 1 3.2633 3.4594 1.2096 30 1 1.7444 4.0417 0.4871 31 1 2.1729 6.9696 4.1420 32 1 1.3928 -1.6627 -1.2818 33 1 1.9558 -0.1529 -2.0379 34 1 3.4786 -2.7772 -2.2850 35 1 3.9554 -1.1979 -2.9486 36 1 6.0161 -1.3179 -1.4681 37 1 5.9571 -2.5173 -2.7783 38 1 6.6601 -3.6832 -0.7986 39 1 4.9686 -4.1474 -1.0961 40 1 5.8674 -1.9589 0.8331 41 1 5.3878 -3.6085 1.3078 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718325191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:14 Heat of formation + Delta-G solvation = -41.765393 kcal Electronic energy + Delta-G solvation = -17380.279146 eV Core-core repulsion = 14805.431916 eV Total energy + Delta-G solvation = -2574.847230 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.28276 -37.54870 -35.69186 -33.87406 -32.73629 -29.44045 -29.04848 -26.73573 -25.25032 -23.37016 -22.13575 -21.57556 -21.44402 -18.90259 -17.82006 -16.75579 -16.46731 -16.23827 -15.98699 -15.62138 -15.30054 -14.89261 -14.71356 -14.42000 -14.32059 -13.78797 -13.53732 -13.35393 -13.18067 -12.82190 -12.66808 -12.62901 -12.44346 -12.12721 -12.00994 -11.80908 -11.78588 -11.49259 -11.37449 -11.27147 -11.17816 -10.76359 -10.41073 -9.23712 -8.44047 -8.29321 -6.33761 0.92802 1.34673 1.37369 1.49575 1.78352 2.36249 2.93418 3.05684 3.68364 3.82568 3.90198 4.07504 4.09809 4.20767 4.25251 4.29765 4.42896 4.52614 4.55996 4.64882 4.68222 4.71762 4.77794 4.84118 4.88327 4.96467 4.99737 5.02229 5.09038 5.11814 5.15492 5.16135 5.37603 5.53050 5.60149 5.66613 6.11821 6.18660 6.30985 6.74359 7.30676 8.87958 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.024693 B = 0.004445 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.659996 B = 6297.266119 C = 6632.868576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.549 5.549 3 C 0.068 3.932 4 C -0.086 4.086 5 C -0.008 4.008 6 C -0.534 4.534 7 H 0.027 0.973 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.955 3.045 11 H -0.264 1.264 12 H -0.283 1.283 13 H -0.246 1.246 14 C 0.074 3.926 15 C -0.037 4.037 16 H 0.072 0.928 17 C -0.111 4.111 18 C -0.128 4.128 19 C -0.115 4.115 20 C -0.087 4.087 21 S -0.285 6.285 22 H 0.031 0.969 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.018 0.982 30 H 0.019 0.981 31 H 0.266 0.734 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 -19.632 -17.210 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.273 5.273 3 C -0.060 4.060 4 C -0.124 4.124 5 C -0.046 4.046 6 C -0.572 4.572 7 H 0.045 0.955 8 C -0.194 4.194 9 N -0.594 5.594 10 Si 0.777 3.223 11 H -0.189 1.189 12 H -0.209 1.209 13 H -0.169 1.169 14 C -0.054 4.054 15 C -0.166 4.166 16 H 0.090 0.910 17 C -0.151 4.151 18 C -0.166 4.166 19 C -0.154 4.154 20 C -0.236 4.236 21 S -0.059 6.059 22 H 0.049 0.951 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.959 -20.032 -15.984 26.312 hybrid contribution 0.799 1.660 -0.980 2.087 sum 6.758 -18.372 -16.964 25.904 Atomic orbital electron populations 1.22381 0.86658 1.02064 1.00889 1.61894 1.08493 1.13632 1.43295 1.22086 0.99706 0.87619 0.96552 1.21252 0.99680 0.94872 0.96631 1.19474 0.96246 0.94002 0.94851 1.21502 1.34950 0.98278 1.02432 0.95492 1.26074 0.96888 0.98602 0.97885 1.70085 1.48767 1.13895 1.26680 0.85596 0.79178 0.78428 0.79055 1.18938 1.20862 1.16948 1.21974 0.93470 0.98247 0.91732 1.23272 0.99595 0.98398 0.95316 0.91002 1.21755 0.96362 1.01275 0.95702 1.21526 0.96014 0.98650 1.00402 1.21692 1.02982 0.98526 0.92165 1.23545 0.94150 1.03932 1.01930 1.87374 1.14922 1.57781 1.45805 0.95065 0.90276 0.92441 0.94571 0.91266 0.93562 0.93893 0.96341 0.96297 0.92481 0.89365 0.92191 0.90138 0.89722 0.92594 0.89344 0.89458 0.90569 0.90685 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.23 127.69 1.18 1.91 16 2 N -0.55 -15.66 4.42 -922.46 -4.07 -19.73 16 3 C 0.07 2.21 4.78 86.30 0.41 2.62 16 4 C -0.09 -3.61 5.07 30.59 0.16 -3.45 16 5 C -0.01 -0.38 4.04 29.84 0.12 -0.26 16 6 C -0.53 -32.18 9.66 25.60 0.25 -31.94 16 7 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 8 C 0.00 0.11 5.47 84.65 0.46 0.57 16 9 N -0.95 -61.55 13.96 21.45 0.30 -61.25 16 10 Si 0.95 45.13 27.47 68.60 1.88 47.02 16 11 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 14 C 0.07 1.64 4.40 86.31 0.38 2.02 16 15 C -0.04 -0.79 2.61 30.63 0.08 -0.71 16 16 H 0.07 1.79 6.67 -2.39 -0.02 1.78 16 17 C -0.11 -1.68 5.05 30.48 0.15 -1.52 16 18 C -0.13 -1.73 5.61 30.31 0.17 -1.56 16 19 C -0.11 -1.56 5.75 30.49 0.18 -1.38 16 20 C -0.09 -1.62 6.46 72.02 0.46 -1.16 16 21 S -0.29 -7.17 21.45 -56.49 -1.21 -8.39 16 22 H 0.03 0.75 8.08 -2.39 -0.02 0.73 16 23 H 0.08 1.75 7.85 -2.39 -0.02 1.73 16 24 H 0.06 1.70 6.72 -2.38 -0.02 1.68 16 25 H 0.04 1.11 8.07 -2.39 -0.02 1.09 16 26 H 0.07 2.21 6.58 -2.39 -0.02 2.19 16 27 H 0.05 1.96 6.67 -2.39 -0.02 1.94 16 28 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 30 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 31 H 0.27 15.94 8.31 -92.70 -0.77 15.17 16 32 H 0.09 1.79 7.75 -2.39 -0.02 1.77 16 33 H 0.06 1.17 8.00 -2.39 -0.02 1.15 16 34 H 0.08 1.15 8.06 -2.39 -0.02 1.13 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 0.86 8.08 -2.39 -0.02 0.84 16 37 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.08 1.03 8.06 -2.39 -0.02 1.01 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -68.99 326.68 1.80 -67.19 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.90 Total: 10.02 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 4.00 Total: -34.86 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -3.77 Total: -80.98 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Atomic # 16 Polarization: -7.17 SS G_CDS: -1.21 Total: -8.39 kcal Total: -68.99 1.80 -67.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718325191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.422 kcal (2) G-P(sol) polarization free energy of solvation -68.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds