Wall clock time and date at job start Mon Mar 30 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00033 * 2 1 4 4 C 1.53009 * 109.46671 * 293.95522 * 3 2 1 5 5 C 1.53000 * 109.46682 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46974 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99757 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00147 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00242 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99814 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47036 * 90.00710 * 10 8 6 12 12 H 1.48502 * 109.46954 * 210.00250 * 10 8 6 13 13 H 1.48493 * 109.47351 * 330.00549 * 10 8 6 14 14 C 1.46898 * 111.00124 * 123.95079 * 2 1 3 15 15 C 1.53005 * 109.47273 * 75.83296 * 14 2 1 16 16 C 1.52573 * 109.22865 * 186.69618 * 15 14 2 17 17 C 1.53094 * 109.95827 * 169.00169 * 16 15 14 18 18 S 1.81753 * 108.84087 * 63.02520 * 17 16 15 19 19 C 1.81750 * 102.21922 * 306.73513 * 18 17 16 20 20 C 1.52585 * 109.22585 * 65.45920 * 15 14 2 21 21 H 1.08998 * 109.47392 * 301.83672 * 1 2 3 22 22 H 1.08993 * 109.47329 * 61.84105 * 1 2 3 23 23 H 1.09000 * 109.46984 * 181.83991 * 1 2 3 24 24 H 1.08996 * 109.47406 * 53.94986 * 3 2 1 25 25 H 1.09006 * 109.47291 * 173.95823 * 3 2 1 26 26 H 1.09000 * 109.46843 * 299.99347 * 4 3 2 27 27 H 1.08998 * 109.47313 * 60.00233 * 4 3 2 28 28 H 1.08997 * 109.47261 * 300.00015 * 5 4 3 29 29 H 1.09006 * 109.47248 * 60.00322 * 5 4 3 30 30 H 0.97006 * 120.00491 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.47557 * 315.83049 * 14 2 1 32 32 H 1.09008 * 109.47155 * 195.82797 * 14 2 1 33 33 H 1.08997 * 109.18720 * 306.07950 * 15 14 2 34 34 H 1.09006 * 109.39168 * 289.14912 * 16 15 14 35 35 H 1.09001 * 109.39175 * 48.85308 * 16 15 14 36 36 H 1.08997 * 109.57514 * 303.22022 * 17 16 15 37 37 H 1.08999 * 109.58005 * 182.82940 * 17 16 15 38 38 H 1.09002 * 109.57672 * 293.45911 * 19 18 17 39 39 H 1.09002 * 109.57286 * 173.06807 * 19 18 17 40 40 H 1.09003 * 109.38781 * 311.14583 * 20 15 14 41 41 H 1.09002 * 109.39268 * 70.85016 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0574 -1.3184 5 6 2.1791 3.4860 -1.3181 6 6 1.8210 4.1615 -2.6168 7 1 1.2594 3.6252 -3.3675 8 6 2.2114 5.4636 -2.8472 9 7 1.8985 6.0532 -3.9803 10 14 3.1835 6.3907 -1.5491 11 1 4.6360 6.1779 -1.7726 12 1 2.8756 7.8405 -1.6418 13 1 2.8116 5.8908 -0.2012 14 6 1.9954 -0.7659 1.1376 15 6 1.8486 -2.2627 0.8564 16 6 2.2408 -3.0491 2.1037 17 6 1.8448 -4.5190 1.9407 18 16 2.7760 -5.2268 0.5495 19 6 2.4061 -4.0603 -0.7942 20 6 2.7390 -2.6421 -0.3232 21 1 -0.3634 0.5421 0.8730 22 1 -0.3633 0.4849 -0.9060 23 1 -0.3633 -1.0271 0.0330 24 1 1.5611 1.9274 0.8308 25 1 3.0797 1.3444 0.1082 26 1 2.0657 1.5015 -2.1492 27 1 0.5471 2.0844 -1.4266 28 1 1.7444 4.0416 -0.4872 29 1 3.2634 3.4594 -1.2097 30 1 2.1728 6.9695 -4.1423 31 1 1.4375 -0.5090 2.0380 32 1 3.0487 -0.5249 1.2816 33 1 0.8101 -2.4801 0.6068 34 1 3.3184 -2.9789 2.2518 35 1 1.7298 -2.6307 2.9708 36 1 0.7761 -4.5890 1.7381 37 1 2.0819 -5.0646 2.8540 38 1 1.3483 -4.1213 -1.0501 39 1 3.0100 -4.3061 -1.6677 40 1 2.5738 -1.9410 -1.1414 41 1 3.7840 -2.5984 -0.0166 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718331352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:10 Heat of formation + Delta-G solvation = -25.176473 kcal Electronic energy + Delta-G solvation = -17290.492260 eV Core-core repulsion = 14716.364379 eV Total energy + Delta-G solvation = -2574.127880 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.75903 -36.34731 -33.60615 -31.72529 -31.58845 -29.15561 -27.42535 -25.69626 -23.31112 -23.19270 -21.16793 -20.19527 -19.89125 -17.13968 -16.67838 -15.55089 -15.40308 -15.04010 -14.75257 -14.19707 -14.02074 -13.88574 -13.62462 -13.34150 -13.00827 -12.77531 -12.60222 -12.02428 -11.87724 -11.68913 -11.60683 -11.45577 -11.27396 -10.92466 -10.74884 -10.69872 -10.47479 -9.91943 -9.85907 -9.68029 -9.55188 -9.16433 -8.52962 -8.17107 -7.89765 -6.03326 -4.01052 1.57951 2.33273 3.30690 3.37918 3.41370 3.95651 4.40945 4.45733 4.52588 4.67443 4.80240 4.99871 5.07626 5.11457 5.24629 5.30466 5.36113 5.42374 5.48834 5.51772 5.57330 5.68592 5.73916 5.78144 5.78614 5.91729 6.04264 6.13836 6.17216 6.24670 6.53922 6.57183 6.91271 7.21703 7.24295 7.35918 7.47163 7.81312 8.55944 9.02219 9.59389 11.10286 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.042262 B = 0.003419 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.381464 B = 8188.131661 C = 8322.303150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.054 3.946 4 C -0.097 4.097 5 C -0.013 4.013 6 C -0.518 4.518 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.905 5.905 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.267 1.267 14 C 0.059 3.941 15 C -0.088 4.088 16 C -0.118 4.118 17 C -0.076 4.076 18 S -0.284 6.284 19 C -0.075 4.075 20 C -0.111 4.111 21 H 0.022 0.978 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.027 0.973 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.012 0.988 29 H 0.010 0.990 30 H 0.262 0.738 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -20.153 12.964 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.263 5.263 3 C -0.074 4.074 4 C -0.135 4.135 5 C -0.051 4.051 6 C -0.556 4.556 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.544 5.544 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.191 1.191 14 C -0.069 4.069 15 C -0.108 4.108 16 C -0.158 4.158 17 C -0.224 4.224 18 S -0.058 6.058 19 C -0.223 4.223 20 C -0.150 4.150 21 H 0.040 0.960 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.466 -21.139 12.408 24.516 hybrid contribution -0.566 2.054 1.355 2.524 sum -0.100 -19.085 13.762 23.530 Atomic orbital electron populations 1.22437 0.87804 1.00958 1.01349 1.61971 1.07720 1.14816 1.41833 1.22359 0.99441 0.86544 0.99010 1.21468 1.00519 0.96835 0.94663 1.19553 0.95681 0.92257 0.97629 1.21148 1.35541 0.97832 1.01106 0.91046 1.25042 0.95720 0.97548 0.95281 1.69917 1.47101 1.13277 1.24112 0.86769 0.80677 0.78911 0.82852 1.20282 1.21436 1.19124 1.22132 1.00316 0.92703 0.91768 1.21113 1.00257 0.94760 0.94621 1.21763 1.02626 0.93021 0.98349 1.23390 1.01681 0.98786 0.98582 1.86854 1.68582 1.40813 1.09544 1.23498 1.04694 0.96415 0.97710 1.21696 0.99841 0.94349 0.99134 0.95981 0.90566 0.92166 0.95437 0.91308 0.92031 0.92862 0.96940 0.97121 0.92775 0.94871 0.90895 0.91111 0.90534 0.90993 0.90059 0.88060 0.90019 0.87903 0.88641 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.12 60.06 0.55 0.83 16 2 N -0.54 -7.23 3.97 -242.92 -0.97 -8.19 16 3 C 0.05 0.85 4.94 -3.82 -0.02 0.84 16 4 C -0.10 -1.91 5.08 -26.73 -0.14 -2.04 16 5 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 6 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 7 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 8 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 9 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 10 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 14 C 0.06 0.65 4.35 -3.82 -0.02 0.63 16 15 C -0.09 -0.82 2.00 -91.05 -0.18 -1.00 16 16 C -0.12 -0.94 5.05 -26.90 -0.14 -1.08 16 17 C -0.08 -0.60 6.46 37.21 0.24 -0.36 16 18 S -0.28 -2.83 22.33 -107.50 -2.40 -5.23 16 19 C -0.08 -0.70 6.46 37.21 0.24 -0.46 16 20 C -0.11 -1.10 5.03 -26.89 -0.14 -1.24 16 21 H 0.02 0.27 8.13 -51.93 -0.42 -0.15 16 22 H 0.08 1.04 6.56 -51.93 -0.34 0.70 16 23 H 0.06 0.64 6.63 -51.93 -0.34 0.30 16 24 H 0.03 0.44 8.11 -51.93 -0.42 0.02 16 25 H 0.07 1.07 7.83 -51.93 -0.41 0.67 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.05 1.05 6.59 -51.93 -0.34 0.71 16 28 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 29 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.03 0.35 7.91 -51.93 -0.41 -0.06 16 32 H 0.07 0.80 7.73 -51.92 -0.40 0.40 16 33 H 0.07 0.69 6.60 -51.93 -0.34 0.34 16 34 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 35 H 0.07 0.51 8.02 -51.93 -0.42 0.09 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.10 7.46 -51.93 -0.39 0.71 16 41 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 LS Contribution 325.59 15.07 4.91 4.91 Total: -1.00 -30.24 325.59 -10.03 -40.27 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -7.54 Total: -3.82 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -0.14 Total: -17.75 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.19 Total: -35.58 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -2.40 Total: -5.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.24 -10.03 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718331352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.097 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds