Wall clock time and date at job start Mon Mar 30 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 111.00033 * 2 1 4 4 C 1.53009 * 109.46671 * 293.95522 * 3 2 1 5 5 C 1.53000 * 109.46682 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.46974 * 179.97438 * 5 4 3 7 7 H 1.08003 * 119.99757 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00147 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00242 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99814 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47036 * 90.00710 * 10 8 6 12 12 H 1.48502 * 109.46954 * 210.00250 * 10 8 6 13 13 H 1.48493 * 109.47351 * 330.00549 * 10 8 6 14 14 C 1.46898 * 111.00124 * 123.95079 * 2 1 3 15 15 C 1.53005 * 109.47273 * 75.83296 * 14 2 1 16 16 C 1.52573 * 109.22865 * 186.69618 * 15 14 2 17 17 C 1.53094 * 109.95827 * 169.00169 * 16 15 14 18 18 S 1.81753 * 108.84087 * 63.02520 * 17 16 15 19 19 C 1.81750 * 102.21922 * 306.73513 * 18 17 16 20 20 C 1.52585 * 109.22585 * 65.45920 * 15 14 2 21 21 H 1.08998 * 109.47392 * 301.83672 * 1 2 3 22 22 H 1.08993 * 109.47329 * 61.84105 * 1 2 3 23 23 H 1.09000 * 109.46984 * 181.83991 * 1 2 3 24 24 H 1.08996 * 109.47406 * 53.94986 * 3 2 1 25 25 H 1.09006 * 109.47291 * 173.95823 * 3 2 1 26 26 H 1.09000 * 109.46843 * 299.99347 * 4 3 2 27 27 H 1.08998 * 109.47313 * 60.00233 * 4 3 2 28 28 H 1.08997 * 109.47261 * 300.00015 * 5 4 3 29 29 H 1.09006 * 109.47248 * 60.00322 * 5 4 3 30 30 H 0.97006 * 120.00491 * 179.97438 * 9 8 6 31 31 H 1.08995 * 109.47557 * 315.83049 * 14 2 1 32 32 H 1.09008 * 109.47155 * 195.82797 * 14 2 1 33 33 H 1.08997 * 109.18720 * 306.07950 * 15 14 2 34 34 H 1.09006 * 109.39168 * 289.14912 * 16 15 14 35 35 H 1.09001 * 109.39175 * 48.85308 * 16 15 14 36 36 H 1.08997 * 109.57514 * 303.22022 * 17 16 15 37 37 H 1.08999 * 109.58005 * 182.82940 * 17 16 15 38 38 H 1.09002 * 109.57672 * 293.45911 * 19 18 17 39 39 H 1.09002 * 109.57286 * 173.06807 * 19 18 17 40 40 H 1.09003 * 109.38781 * 311.14583 * 20 15 14 41 41 H 1.09002 * 109.39268 * 70.85016 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6313 2.0574 -1.3184 5 6 2.1791 3.4860 -1.3181 6 6 1.8210 4.1615 -2.6168 7 1 1.2594 3.6252 -3.3675 8 6 2.2114 5.4636 -2.8472 9 7 1.8985 6.0532 -3.9803 10 14 3.1835 6.3907 -1.5491 11 1 4.6360 6.1779 -1.7726 12 1 2.8756 7.8405 -1.6418 13 1 2.8116 5.8908 -0.2012 14 6 1.9954 -0.7659 1.1376 15 6 1.8486 -2.2627 0.8564 16 6 2.2408 -3.0491 2.1037 17 6 1.8448 -4.5190 1.9407 18 16 2.7760 -5.2268 0.5495 19 6 2.4061 -4.0603 -0.7942 20 6 2.7390 -2.6421 -0.3232 21 1 -0.3634 0.5421 0.8730 22 1 -0.3633 0.4849 -0.9060 23 1 -0.3633 -1.0271 0.0330 24 1 1.5611 1.9274 0.8308 25 1 3.0797 1.3444 0.1082 26 1 2.0657 1.5015 -2.1492 27 1 0.5471 2.0844 -1.4266 28 1 1.7444 4.0416 -0.4872 29 1 3.2634 3.4594 -1.2097 30 1 2.1728 6.9695 -4.1423 31 1 1.4375 -0.5090 2.0380 32 1 3.0487 -0.5249 1.2816 33 1 0.8101 -2.4801 0.6068 34 1 3.3184 -2.9789 2.2518 35 1 1.7298 -2.6307 2.9708 36 1 0.7761 -4.5890 1.7381 37 1 2.0819 -5.0646 2.8540 38 1 1.3483 -4.1213 -1.0501 39 1 3.0100 -4.3061 -1.6677 40 1 2.5738 -1.9410 -1.1414 41 1 3.7840 -2.5984 -0.0166 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718331352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:09 Heat of formation + Delta-G solvation = -42.224993 kcal Electronic energy + Delta-G solvation = -17291.231539 eV Core-core repulsion = 14716.364379 eV Total energy + Delta-G solvation = -2574.867160 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.68283 -37.39800 -35.46490 -33.49055 -32.40168 -30.19052 -28.87385 -26.92102 -24.58472 -23.99145 -22.51264 -21.50488 -20.94853 -18.87928 -17.87015 -16.70638 -16.57221 -16.09111 -15.87162 -15.61439 -15.15711 -14.79175 -14.67646 -14.55551 -14.32066 -13.79220 -13.66483 -13.57301 -13.15924 -12.80829 -12.69001 -12.55158 -12.41945 -12.29808 -12.17504 -11.76699 -11.55505 -11.44330 -11.37774 -11.25884 -11.10934 -10.76067 -10.56357 -9.21608 -8.66728 -8.29392 -6.33735 0.88085 1.35941 1.37840 1.49929 1.63840 2.36422 2.95554 3.05921 3.64367 3.82843 3.96048 4.10822 4.12583 4.26998 4.28717 4.36691 4.38239 4.50459 4.59035 4.69177 4.70814 4.75914 4.78711 4.84069 4.90230 4.95609 4.98583 5.04130 5.06789 5.09891 5.18263 5.37063 5.44353 5.54342 5.61591 5.66964 6.12878 6.22614 6.30839 6.74824 7.30963 8.87732 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.042262 B = 0.003419 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.381464 B = 8188.131661 C = 8322.303150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.066 3.934 4 C -0.088 4.088 5 C -0.010 4.010 6 C -0.533 4.533 7 H 0.028 0.972 8 C 0.001 3.999 9 N -0.954 5.954 10 Si 0.954 3.046 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.245 1.245 14 C 0.061 3.939 15 C -0.081 4.081 16 C -0.112 4.112 17 C -0.066 4.066 18 S -0.321 6.321 19 C -0.067 4.067 20 C -0.106 4.106 21 H 0.026 0.974 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.031 0.969 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.266 0.734 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 -20.801 15.759 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.062 4.062 4 C -0.126 4.126 5 C -0.048 4.048 6 C -0.571 4.571 7 H 0.047 0.953 8 C -0.196 4.196 9 N -0.595 5.595 10 Si 0.777 3.223 11 H -0.190 1.190 12 H -0.210 1.210 13 H -0.169 1.169 14 C -0.066 4.066 15 C -0.100 4.100 16 C -0.152 4.152 17 C -0.214 4.214 18 S -0.095 6.095 19 C -0.215 4.215 20 C -0.145 4.145 21 H 0.045 0.955 22 H 0.076 0.924 23 H 0.099 0.901 24 H 0.050 0.950 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.983 -21.818 15.213 26.616 hybrid contribution -0.794 2.196 0.397 2.368 sum 0.189 -19.622 15.610 25.075 Atomic orbital electron populations 1.22432 0.87275 1.02121 1.00587 1.61898 1.08270 1.13408 1.43551 1.22096 0.99937 0.87787 0.96395 1.21280 0.99703 0.94847 0.96732 1.19495 0.96248 0.94191 0.94848 1.21523 1.34947 0.98242 1.02405 0.95332 1.26080 0.96984 0.98684 0.97816 1.70080 1.48820 1.13941 1.26632 0.85597 0.79167 0.77202 0.80294 1.19042 1.21005 1.16875 1.22177 1.00311 0.93097 0.91065 1.21050 1.00059 0.93882 0.95027 1.21706 1.02635 0.92801 0.98012 1.23444 1.01595 0.98596 0.97793 1.87002 1.69464 1.41805 1.11254 1.23437 1.04884 0.95723 0.97480 1.21615 0.99785 0.94256 0.98890 0.95549 0.92421 0.90146 0.95028 0.90653 0.93414 0.93619 0.96360 0.96254 0.92504 0.93832 0.90848 0.91068 0.90835 0.89343 0.89299 0.86682 0.89666 0.87840 0.90396 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.12 127.69 1.16 1.72 16 2 N -0.55 -13.69 3.97 -922.45 -3.66 -17.35 16 3 C 0.07 1.97 4.94 86.31 0.43 2.40 16 4 C -0.09 -3.43 5.08 30.60 0.16 -3.28 16 5 C -0.01 -0.47 4.04 29.85 0.12 -0.34 16 6 C -0.53 -31.39 9.66 25.60 0.25 -31.15 16 7 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 8 C 0.00 0.04 5.47 84.65 0.46 0.50 16 9 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 10 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 14 C 0.06 1.17 4.35 86.31 0.38 1.55 16 15 C -0.08 -1.32 2.00 -11.07 -0.02 -1.34 16 16 C -0.11 -1.45 5.05 30.48 0.15 -1.30 16 17 C -0.07 -0.87 6.46 72.01 0.46 -0.40 16 18 S -0.32 -5.95 22.33 -56.49 -1.26 -7.21 16 19 C -0.07 -1.17 6.46 72.01 0.46 -0.71 16 20 C -0.11 -1.97 5.03 30.49 0.15 -1.82 16 21 H 0.03 0.59 8.13 -2.39 -0.02 0.57 16 22 H 0.06 1.55 6.56 -2.39 -0.02 1.54 16 23 H 0.08 1.54 6.63 -2.39 -0.02 1.52 16 24 H 0.03 0.93 8.11 -2.39 -0.02 0.91 16 25 H 0.08 2.17 7.83 -2.38 -0.02 2.15 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.83 6.59 -2.39 -0.02 1.81 16 28 H 0.02 0.83 7.20 -2.39 -0.02 0.82 16 29 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 30 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 31 H 0.04 0.77 7.91 -2.39 -0.02 0.75 16 32 H 0.07 1.42 7.73 -2.38 -0.02 1.41 16 33 H 0.07 1.18 6.60 -2.39 -0.02 1.16 16 34 H 0.07 1.03 8.06 -2.38 -0.02 1.01 16 35 H 0.09 0.91 8.02 -2.39 -0.02 0.89 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 1.74 7.46 -2.39 -0.02 1.72 16 41 H 0.07 1.27 8.06 -2.39 -0.02 1.25 16 Total: -1.00 -65.94 325.59 2.33 -63.61 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.91 Total: 9.22 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 4.17 Total: -34.16 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -3.37 Total: -77.87 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -1.26 Total: -7.21 kcal Total: -65.94 2.33 -63.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718331352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.388 kcal (2) G-P(sol) polarization free energy of solvation -65.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds