Wall clock time and date at job start Mon Mar 30 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81391 * 103.00067 * 2 1 4 4 C 1.53004 * 109.47451 * 184.99614 * 3 2 1 5 5 C 1.52997 * 109.47530 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46991 * 59.99990 * 5 4 3 7 7 C 1.53006 * 109.46626 * 60.00378 * 6 5 4 8 8 N 1.46905 * 109.46684 * 174.99707 * 7 6 5 9 9 C 1.46903 * 110.99390 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46692 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47106 * 180.02562 * 10 9 8 12 12 H 1.07993 * 119.99640 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00023 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99798 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00027 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47044 * 60.00262 * 15 13 11 17 17 H 1.48495 * 109.47074 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47383 * 300.00554 * 15 13 11 19 19 C 1.52997 * 109.47592 * 300.00342 * 6 5 4 20 20 C 1.53002 * 109.46978 * 59.99580 * 19 6 5 21 21 H 1.09005 * 109.47168 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46845 * 299.99590 * 1 2 3 23 23 H 1.08995 * 109.47282 * 60.00000 * 1 2 3 24 24 H 1.09002 * 109.47262 * 305.00177 * 3 2 1 25 25 H 1.09001 * 109.46322 * 60.00120 * 4 3 2 26 26 H 1.09002 * 109.47347 * 300.00510 * 4 3 2 27 27 H 1.09002 * 109.47153 * 300.00544 * 5 4 3 28 28 H 1.08993 * 109.47194 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.47160 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 31 31 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 32 32 H 1.00901 * 110.99779 * 56.04682 * 8 7 6 33 33 H 1.08994 * 109.47436 * 299.99878 * 9 8 7 34 34 H 1.08999 * 109.47287 * 60.00669 * 9 8 7 35 35 H 1.09002 * 109.46909 * 299.99797 * 10 9 8 36 36 H 1.08996 * 109.47388 * 59.99855 * 10 9 8 37 37 H 0.97000 * 119.99266 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47375 * 179.97438 * 19 6 5 39 39 H 1.09002 * 109.46777 * 300.00227 * 19 6 5 40 40 H 1.09004 * 109.47006 * 180.02562 * 20 19 6 41 41 H 1.09002 * 109.47097 * 60.00199 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7370 1.9412 -0.1256 5 6 4.0812 3.4319 -0.1250 6 6 3.6020 4.0654 1.1826 7 6 4.2935 3.3817 2.3639 8 7 3.9258 4.0673 3.6101 9 6 4.5724 3.4364 4.7684 10 6 4.1660 4.1758 6.0448 11 6 4.8297 3.5290 7.2331 12 1 5.4771 2.6762 7.0920 13 6 4.6114 4.0267 8.5002 14 7 3.8234 5.0656 8.6719 15 14 5.4336 3.2245 9.9733 16 1 6.9085 3.2878 9.8122 17 1 5.0392 3.9422 11.2120 18 1 5.0064 1.8054 10.0666 19 6 2.0871 3.8917 1.3084 20 6 1.7429 2.4009 1.3077 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.7294 2.2541 -0.8418 25 1 4.0783 1.4894 -1.0570 26 1 4.2296 1.4545 0.7162 27 1 3.5886 3.9189 -0.9666 28 1 5.1604 3.5556 -0.2149 29 1 3.8468 5.1276 1.1829 30 1 3.9783 2.3396 2.4158 31 1 5.3741 3.4283 2.2289 32 1 2.9238 4.0943 3.7258 33 1 4.2588 2.3948 4.8370 34 1 5.6550 3.4829 4.6503 35 1 4.4793 5.2176 5.9765 36 1 3.0834 4.1290 6.1627 37 1 3.6696 5.4155 9.5634 38 1 1.7457 4.3427 2.2402 39 1 1.5945 4.3787 0.4668 40 1 0.6636 2.2772 1.3968 41 1 2.2355 1.9139 2.1492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720605646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:26 Heat of formation + Delta-G solvation = -36.340011 kcal Electronic energy + Delta-G solvation = -17354.760175 eV Core-core repulsion = 14780.148207 eV Total energy + Delta-G solvation = -2574.611968 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.36474 -35.46068 -32.99309 -31.48365 -31.02136 -29.07000 -28.82347 -25.30957 -23.37699 -22.70353 -22.17617 -20.49439 -18.58584 -16.74867 -16.28826 -15.96905 -15.18406 -14.67107 -14.59302 -14.37633 -13.92920 -13.72079 -13.64829 -13.45554 -12.80679 -12.58303 -12.49142 -12.30707 -12.03441 -11.81727 -11.30068 -11.21889 -10.90909 -10.90152 -10.65501 -10.63383 -10.35423 -10.17867 -9.94291 -9.73958 -9.30891 -9.12890 -8.32639 -7.87420 -7.73107 -5.97550 -3.99991 1.49967 2.39018 3.35227 3.39290 3.41972 4.41414 4.46988 4.47275 4.72211 4.87879 4.90762 4.93047 4.97933 5.07755 5.21698 5.31001 5.34629 5.38363 5.38975 5.48946 5.65497 5.68672 5.82935 5.89678 5.92015 6.00926 6.11752 6.23111 6.30492 6.37953 6.42252 6.50883 7.01921 7.53120 7.76040 7.86478 8.00814 8.11692 8.46558 9.07153 9.63646 11.13903 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.026857 B = 0.003805 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.319354 B = 7356.729111 C = 7803.355149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.274 6.274 3 C -0.043 4.043 4 C -0.102 4.102 5 C -0.106 4.106 6 C -0.088 4.088 7 C 0.059 3.941 8 N -0.692 5.692 9 C 0.066 3.934 10 C 0.026 3.974 11 C -0.522 4.522 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.113 4.113 20 C -0.118 4.118 21 H 0.098 0.902 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.333 0.667 33 H 0.014 0.986 34 H 0.057 0.943 35 H 0.025 0.975 36 H 0.012 0.988 37 H 0.261 0.739 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 -5.795 -20.482 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.045 6.045 3 C -0.172 4.172 4 C -0.141 4.141 5 C -0.146 4.146 6 C -0.106 4.106 7 C -0.071 4.071 8 N -0.323 5.323 9 C -0.063 4.063 10 C -0.012 4.012 11 C -0.561 4.561 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.152 4.152 20 C -0.157 4.157 21 H 0.117 0.883 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.454 -6.131 -20.422 21.783 hybrid contribution -1.022 -0.270 0.967 1.433 sum -5.477 -6.401 -19.455 21.201 Atomic orbital electron populations 1.23364 0.94348 1.06273 1.04874 1.86891 1.07317 1.12409 1.97928 1.23198 1.00457 0.92381 1.01123 1.21404 0.92189 0.97493 1.02996 1.21540 1.01285 0.94220 0.97557 1.21172 0.94630 1.00817 0.94017 1.22073 0.99678 0.95366 0.89937 1.60638 1.13924 1.55767 1.01972 1.22142 0.98101 0.95318 0.90697 1.19060 0.96443 0.96222 0.89447 1.21155 1.28597 1.14630 0.91695 0.92826 1.24998 0.95318 0.95027 0.98982 1.69968 1.37170 1.23769 1.22424 0.86651 0.79914 0.79431 0.81956 1.20211 1.21270 1.20291 1.21593 0.96193 0.95088 1.02368 1.21934 1.00645 0.96540 0.96625 0.88314 0.90323 0.90740 0.89797 0.91344 0.90564 0.91860 0.91203 0.90007 0.95206 0.91673 0.84841 0.96792 0.92463 0.95697 0.96924 0.92966 0.90833 0.92103 0.92173 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.45 101.05 1.06 0.09 16 2 S -0.27 -2.98 21.79 -107.50 -2.34 -5.32 16 3 C -0.04 -0.43 2.65 -26.73 -0.07 -0.50 16 4 C -0.10 -1.01 4.94 -26.73 -0.13 -1.14 16 5 C -0.11 -1.00 5.45 -26.73 -0.15 -1.15 16 6 C -0.09 -0.99 2.87 -90.62 -0.26 -1.25 16 7 C 0.06 0.84 4.44 -3.82 -0.02 0.82 16 8 N -0.69 -12.33 6.50 -113.77 -0.74 -13.07 16 9 C 0.07 1.41 5.62 -3.82 -0.02 1.39 16 10 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 11 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.11 -1.20 5.22 -26.73 -0.14 -1.34 16 20 C -0.12 -1.25 4.84 -26.73 -0.13 -1.38 16 21 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 22 H 0.08 0.62 7.14 -51.92 -0.37 0.25 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.86 6.54 -51.93 -0.34 0.52 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.03 0.43 4.83 -51.93 -0.25 0.18 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.33 5.75 6.98 -39.29 -0.27 5.48 16 33 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.07 0.86 6.68 -51.93 -0.35 0.51 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.60 6.92 -51.93 -0.36 0.24 16 41 H 0.08 1.00 6.32 -51.93 -0.33 0.68 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -30.20 326.02 -10.18 -40.37 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.31 Total: 0.40 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -0.42 Total: -17.70 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.00 Total: -39.55 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.34 Total: -5.32 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.20 -10.18 -40.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720605646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.034 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds