Wall clock time and date at job start Mon Mar 30 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81391 * 103.00067 * 2 1 4 4 C 1.53004 * 109.47451 * 184.99614 * 3 2 1 5 5 C 1.52997 * 109.47530 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46991 * 59.99990 * 5 4 3 7 7 C 1.53006 * 109.46626 * 60.00378 * 6 5 4 8 8 N 1.46905 * 109.46684 * 174.99707 * 7 6 5 9 9 C 1.46903 * 110.99390 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.46692 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47106 * 180.02562 * 10 9 8 12 12 H 1.07993 * 119.99640 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00023 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99798 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00027 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47044 * 60.00262 * 15 13 11 17 17 H 1.48495 * 109.47074 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47383 * 300.00554 * 15 13 11 19 19 C 1.52997 * 109.47592 * 300.00342 * 6 5 4 20 20 C 1.53002 * 109.46978 * 59.99580 * 19 6 5 21 21 H 1.09005 * 109.47168 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46845 * 299.99590 * 1 2 3 23 23 H 1.08995 * 109.47282 * 60.00000 * 1 2 3 24 24 H 1.09002 * 109.47262 * 305.00177 * 3 2 1 25 25 H 1.09001 * 109.46322 * 60.00120 * 4 3 2 26 26 H 1.09002 * 109.47347 * 300.00510 * 4 3 2 27 27 H 1.09002 * 109.47153 * 300.00544 * 5 4 3 28 28 H 1.08993 * 109.47194 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.47160 * 180.02562 * 6 5 4 30 30 H 1.08995 * 109.46794 * 294.99833 * 7 6 5 31 31 H 1.09000 * 109.47314 * 54.99967 * 7 6 5 32 32 H 1.00901 * 110.99779 * 56.04682 * 8 7 6 33 33 H 1.08994 * 109.47436 * 299.99878 * 9 8 7 34 34 H 1.08999 * 109.47287 * 60.00669 * 9 8 7 35 35 H 1.09002 * 109.46909 * 299.99797 * 10 9 8 36 36 H 1.08996 * 109.47388 * 59.99855 * 10 9 8 37 37 H 0.97000 * 119.99266 * 179.97438 * 14 13 11 38 38 H 1.09001 * 109.47375 * 179.97438 * 19 6 5 39 39 H 1.09002 * 109.46777 * 300.00227 * 19 6 5 40 40 H 1.09004 * 109.47006 * 180.02562 * 20 19 6 41 41 H 1.09002 * 109.47097 * 60.00199 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 6 3.7370 1.9412 -0.1256 5 6 4.0812 3.4319 -0.1250 6 6 3.6020 4.0654 1.1826 7 6 4.2935 3.3817 2.3639 8 7 3.9258 4.0673 3.6101 9 6 4.5724 3.4364 4.7684 10 6 4.1660 4.1758 6.0448 11 6 4.8297 3.5290 7.2331 12 1 5.4771 2.6762 7.0920 13 6 4.6114 4.0267 8.5002 14 7 3.8234 5.0656 8.6719 15 14 5.4336 3.2245 9.9733 16 1 6.9085 3.2878 9.8122 17 1 5.0392 3.9422 11.2120 18 1 5.0064 1.8054 10.0666 19 6 2.0871 3.8917 1.3084 20 6 1.7429 2.4009 1.3077 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.7294 2.2541 -0.8418 25 1 4.0783 1.4894 -1.0570 26 1 4.2296 1.4545 0.7162 27 1 3.5886 3.9189 -0.9666 28 1 5.1604 3.5556 -0.2149 29 1 3.8468 5.1276 1.1829 30 1 3.9783 2.3396 2.4158 31 1 5.3741 3.4283 2.2289 32 1 2.9238 4.0943 3.7258 33 1 4.2588 2.3948 4.8370 34 1 5.6550 3.4829 4.6503 35 1 4.4793 5.2176 5.9765 36 1 3.0834 4.1290 6.1627 37 1 3.6696 5.4155 9.5634 38 1 1.7457 4.3427 2.2402 39 1 1.5945 4.3787 0.4668 40 1 0.6636 2.2772 1.3968 41 1 2.2355 1.9139 2.1492 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720605646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:26 Heat of formation + Delta-G solvation = -53.783699 kcal Electronic energy + Delta-G solvation = -17355.516590 eV Core-core repulsion = 14780.148207 eV Total energy + Delta-G solvation = -2575.368383 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30800 -37.01954 -34.97581 -32.73300 -31.93129 -30.56487 -29.65153 -26.94386 -24.94945 -23.60274 -23.09955 -22.37466 -19.56672 -18.49242 -17.57311 -17.10351 -16.57999 -16.27183 -15.70834 -15.43369 -15.08961 -14.86974 -14.50193 -14.40934 -14.10599 -13.91497 -13.80945 -13.40622 -13.22163 -12.99620 -12.84996 -12.72107 -12.44118 -12.20049 -12.07990 -11.89439 -11.54954 -11.47802 -11.35115 -11.05034 -10.99220 -10.59241 -10.55725 -9.22341 -8.70869 -8.20791 -6.32531 0.75562 1.39889 1.43271 1.51282 1.66274 2.40363 3.12407 3.38192 3.64252 3.67333 3.97666 4.06012 4.19758 4.29328 4.32657 4.35465 4.36503 4.52246 4.53117 4.57049 4.60320 4.68519 4.80833 4.86170 4.88573 5.01033 5.05817 5.07332 5.19812 5.24515 5.33356 5.42597 5.45195 5.48552 5.66913 5.78522 6.14865 6.29800 6.56979 6.84286 7.36733 8.91201 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.026857 B = 0.003805 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.319354 B = 7356.729111 C = 7803.355149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.327 6.327 3 C -0.031 4.031 4 C -0.100 4.100 5 C -0.099 4.099 6 C -0.082 4.082 7 C 0.061 3.939 8 N -0.695 5.695 9 C 0.084 3.916 10 C 0.033 3.967 11 C -0.548 4.548 12 H 0.059 0.941 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.967 3.033 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.267 1.267 19 C -0.110 4.110 20 C -0.114 4.114 21 H 0.107 0.893 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.100 0.900 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.336 0.664 33 H 0.013 0.987 34 H 0.055 0.945 35 H -0.005 1.005 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 -6.333 -21.562 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.098 6.098 3 C -0.159 4.159 4 C -0.139 4.139 5 C -0.138 4.138 6 C -0.100 4.100 7 C -0.068 4.068 8 N -0.326 5.326 9 C -0.045 4.045 10 C -0.004 4.004 11 C -0.586 4.586 12 H 0.077 0.923 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.192 1.192 19 C -0.149 4.149 20 C -0.153 4.153 21 H 0.126 0.874 22 H 0.098 0.902 23 H 0.108 0.892 24 H 0.118 0.882 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.013 0.987 36 H 0.009 0.991 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.500 -6.675 -21.526 22.982 hybrid contribution -1.055 -0.090 1.271 1.654 sum -5.555 -6.765 -20.255 22.066 Atomic orbital electron populations 1.23400 0.91489 1.07179 1.05649 1.87084 1.10629 1.14069 1.98017 1.23145 1.00462 0.91250 1.01021 1.21386 0.92135 0.97707 1.02647 1.21500 1.01833 0.93673 0.96807 1.21121 0.94916 1.00338 0.93661 1.22146 0.99877 0.95444 0.89298 1.60568 1.13998 1.55976 1.02097 1.21758 0.98108 0.94594 0.90082 1.18908 0.94786 0.95001 0.91745 1.21593 1.29057 1.15095 0.92901 0.92310 1.25969 0.95798 0.95491 1.02344 1.70103 1.38415 1.25168 1.23397 0.85480 0.79075 0.78646 0.77717 1.19137 1.20617 1.19201 1.21570 0.95694 0.95094 1.02567 1.21859 1.00878 0.96305 0.96237 0.87418 0.90224 0.89206 0.88160 0.90442 0.92463 0.89753 0.90693 0.90367 0.95259 0.91964 0.84511 0.96875 0.92619 0.98663 0.99125 0.92687 0.92269 0.89912 0.91413 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.45 113.37 1.18 -0.38 16 2 S -0.33 -6.77 21.79 -56.49 -1.23 -8.00 16 3 C -0.03 -0.55 2.65 30.60 0.08 -0.47 16 4 C -0.10 -1.81 4.94 30.59 0.15 -1.66 16 5 C -0.10 -1.62 5.45 30.59 0.17 -1.45 16 6 C -0.08 -1.73 2.87 -10.79 -0.03 -1.76 16 7 C 0.06 1.72 4.44 86.30 0.38 2.10 16 8 N -0.69 -25.06 6.50 -513.86 -3.34 -28.40 16 9 C 0.08 3.67 5.62 86.30 0.49 4.15 16 10 C 0.03 1.81 5.23 29.85 0.16 1.97 16 11 C -0.55 -32.09 9.11 25.60 0.23 -31.85 16 12 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 13 C 0.00 0.12 5.46 84.65 0.46 0.58 16 14 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 15 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 C -0.11 -2.16 5.22 30.59 0.16 -2.00 16 20 C -0.11 -2.27 4.84 30.60 0.15 -2.13 16 21 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.08 1.13 7.14 -2.39 -0.02 1.11 16 23 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 1.26 6.54 -2.39 -0.02 1.24 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.03 0.85 4.83 -2.39 -0.01 0.84 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.34 11.84 6.98 -89.69 -0.63 11.21 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 35 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.54 16 38 H 0.06 1.34 6.68 -2.39 -0.02 1.33 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.24 6.92 -2.38 -0.02 1.23 16 41 H 0.05 1.37 6.32 -2.39 -0.02 1.35 16 Total: -1.00 -65.35 326.02 1.68 -63.67 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.36 Total: 15.98 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 3.58 Total: -32.88 kcal Atomic # 7 Polarization: -82.62 SS G_CDS: -3.06 Total: -85.68 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: -6.77 SS G_CDS: -1.23 Total: -8.00 kcal Total: -65.35 1.68 -63.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720605646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.887 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds