Wall clock time and date at job start Mon Mar 30 2020 07:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 119.99848 * 2 1 4 4 C 1.50701 * 109.46716 * 89.99901 * 3 2 1 5 5 H 1.07999 * 120.00765 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99773 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99674 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00105 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47478 * 89.99904 * 8 6 4 10 10 H 1.48505 * 109.47482 * 329.99968 * 8 6 4 11 11 H 1.48500 * 109.47397 * 209.99864 * 8 6 4 12 12 C 1.39830 * 120.00196 * 179.97438 * 2 1 3 13 13 O 1.35966 * 120.00341 * 214.91464 * 12 2 1 14 14 C 1.33068 * 120.00019 * 34.90627 * 12 2 1 15 15 C 1.51162 * 128.13715 * 185.67754 * 14 12 2 16 16 C 1.48948 * 112.00686 * 179.85913 * 15 14 12 17 17 S 1.76204 * 121.12290 * 180.22927 * 16 15 14 18 18 C 1.31388 * 117.74683 * 0.47693 * 16 15 14 19 19 S 1.76963 * 108.34846 * 359.72984 * 18 16 15 20 20 H 1.09003 * 109.47019 * 85.00545 * 1 2 3 21 21 H 1.09001 * 109.46963 * 205.00140 * 1 2 3 22 22 H 1.08997 * 109.47497 * 325.00292 * 1 2 3 23 23 H 1.08998 * 109.47055 * 330.00310 * 3 2 1 24 24 H 1.08992 * 109.47098 * 209.99589 * 3 2 1 25 25 H 0.96998 * 120.00081 * 0.02562 * 7 6 4 26 26 H 0.96699 * 114.00495 * 179.97438 * 13 12 2 27 27 H 1.08998 * 108.98067 * 300.69886 * 15 14 12 28 28 H 1.09003 * 108.97919 * 59.35881 * 15 14 12 29 29 H 1.34504 * 102.99581 * 180.27971 * 17 16 15 30 30 H 1.08000 * 125.82317 * 179.70999 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7037 1.4209 5 1 2.0980 1.0958 2.2418 6 6 3.1258 2.8780 1.6729 7 7 3.5532 3.6181 0.6732 8 14 3.4377 3.4169 3.4339 9 1 4.7332 2.8603 3.8999 10 1 2.3431 2.9190 4.3053 11 1 3.4849 4.8998 3.4969 12 6 2.1642 -1.2109 0.0005 13 8 3.3403 -1.3166 0.6745 14 6 1.6784 -2.2600 -0.6584 15 6 2.2118 -3.6741 -0.6854 16 6 1.3833 -4.5669 -1.5428 17 16 1.7865 -6.2707 -1.7405 18 6 0.3446 -4.0397 -2.1507 19 16 0.2568 -2.3259 -1.7185 20 1 -0.3633 0.0895 -1.0238 21 1 -0.3633 -0.9314 0.4343 22 1 -0.3634 0.8418 0.5894 23 1 1.6083 2.0284 -0.5138 24 1 3.1498 1.1384 -0.5137 25 1 3.3915 3.3381 -0.2413 26 1 3.7492 -2.1911 0.6174 27 1 3.2331 -3.6606 -1.0661 28 1 2.2198 -4.0694 0.3303 29 1 0.8268 -6.7142 -2.5719 30 1 -0.3387 -4.5630 -2.8031 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725683843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:54 Heat of formation + Delta-G solvation = -16.868008 kcal Electronic energy + Delta-G solvation = -15043.212541 eV Core-core repulsion = 12477.387052 eV Total energy + Delta-G solvation = -2565.825490 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.23393 -37.44534 -36.95130 -34.97640 -31.67937 -29.31609 -28.15954 -26.10684 -24.30794 -22.42025 -21.05948 -19.49064 -19.11855 -18.19819 -17.67784 -16.35033 -16.23333 -15.93600 -15.76680 -15.61559 -15.17026 -14.29977 -14.15760 -14.02358 -13.61099 -13.38139 -13.34205 -13.05904 -12.55166 -12.47121 -11.93806 -11.89162 -11.87968 -11.29123 -10.84496 -10.76665 -10.58097 -9.66392 -8.89396 -8.59193 -7.51404 -6.39628 0.20496 0.54938 0.90250 1.26223 1.42353 1.53074 1.61176 1.79221 1.93847 2.00422 2.55913 3.13993 3.50321 3.68016 3.97313 4.35984 4.50475 4.53342 4.56687 4.61531 4.79365 4.82326 4.88553 4.99695 5.03552 5.86544 5.87372 6.18452 6.46972 6.59598 7.00171 7.38860 8.70790 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.041760 B = 0.004824 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.337137 B = 5802.586052 C = 6187.598073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.622 5.622 3 C 0.262 3.738 4 C -0.610 4.610 5 H 0.043 0.957 6 C -0.030 4.030 7 N -0.935 5.935 8 Si 1.120 2.880 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.423 3.577 13 O -0.483 6.483 14 C -0.379 4.379 15 C -0.005 4.005 16 C -0.124 4.124 17 S -0.080 6.080 18 C -0.176 4.176 19 S -0.026 6.026 20 H 0.056 0.944 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.010 0.990 24 H -0.005 1.005 25 H 0.256 0.744 26 H 0.417 0.583 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.389 -17.804 -3.844 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.342 5.342 3 C 0.140 3.860 4 C -0.649 4.649 5 H 0.062 0.938 6 C -0.228 4.228 7 N -0.572 5.572 8 Si 0.942 3.058 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.206 1.206 12 C 0.268 3.732 13 O -0.286 6.286 14 C -0.501 4.501 15 C -0.045 4.045 16 C -0.250 4.250 17 S 0.084 5.916 18 C -0.317 4.317 19 S 0.219 5.781 20 H 0.074 0.926 21 H 0.096 0.904 22 H 0.081 0.919 23 H 0.028 0.972 24 H 0.013 0.987 25 H 0.065 0.935 26 H 0.273 0.727 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.057 0.943 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.247 -15.921 -3.064 17.041 hybrid contribution -0.609 -1.834 -1.424 2.400 sum -5.856 -17.755 -4.487 19.227 Atomic orbital electron populations 1.21519 0.77419 1.02641 1.01104 1.46526 1.05117 1.02046 1.80532 1.18808 0.90144 0.81073 0.95925 1.22626 1.39901 1.09176 0.93153 0.93824 1.27252 0.92939 0.93570 1.09068 1.70909 1.45920 1.40435 0.99983 0.82883 0.77124 0.76061 0.69767 1.20125 1.19875 1.20592 1.16566 0.83804 0.84944 0.87895 1.84986 1.34205 1.40397 1.69047 1.22130 1.10920 0.98243 1.18797 1.18659 0.99088 0.86872 0.99900 1.22776 1.00297 0.97694 1.04216 1.85793 1.40979 1.02810 1.62066 1.25508 1.01728 0.99195 1.05277 1.84173 1.33125 1.06771 1.54015 0.92620 0.90392 0.91866 0.97184 0.98658 0.93496 0.72679 0.88739 0.88769 0.94255 0.80429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.18 8.86 127.77 1.13 5.32 16 2 N -0.62 -26.95 2.96 -843.47 -2.50 -29.45 16 3 C 0.26 13.75 4.53 85.63 0.39 14.14 16 4 C -0.61 -34.63 9.39 25.60 0.24 -34.39 16 5 H 0.04 2.52 7.81 -2.91 -0.02 2.50 16 6 C -0.03 -1.73 5.46 84.66 0.46 -1.27 16 7 N -0.93 -56.99 13.65 21.45 0.29 -56.70 16 8 Si 1.12 50.52 29.90 68.60 2.05 52.57 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.42 16.20 7.15 82.26 0.59 16.79 16 13 O -0.48 -18.03 13.33 -93.17 -1.24 -19.27 16 14 C -0.38 -12.07 6.18 24.67 0.15 -11.92 16 15 C 0.00 -0.12 4.99 28.71 0.14 0.02 16 16 C -0.12 -2.85 6.20 24.73 0.15 -2.69 16 17 S -0.08 -1.45 25.91 -56.49 -1.46 -2.91 16 18 C -0.18 -4.11 10.95 67.40 0.74 -3.37 16 19 S -0.03 -0.78 19.39 -56.49 -1.10 -1.87 16 20 H 0.06 1.87 7.21 -2.39 -0.02 1.85 16 21 H 0.08 2.56 7.10 -2.39 -0.02 2.54 16 22 H 0.06 2.35 8.11 -2.39 -0.02 2.33 16 23 H 0.01 0.55 7.94 -2.39 -0.02 0.54 16 24 H 0.00 -0.26 7.92 -2.39 -0.02 -0.28 16 25 H 0.26 15.71 7.22 -92.71 -0.67 15.05 16 26 H 0.42 10.21 7.76 -74.06 -0.57 9.64 16 27 H 0.09 2.09 8.05 -2.39 -0.02 2.07 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.09 1.38 9.03 73.35 0.66 2.04 16 30 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -66.57 284.50 1.40 -65.17 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.36 Total: 9.86 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 4.00 Total: -17.38 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -2.20 Total: -86.15 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -1.24 Total: -19.27 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.05 Total: 52.57 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -2.56 Total: -4.79 kcal Total: -66.57 1.40 -65.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725683843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.301 kcal (2) G-P(sol) polarization free energy of solvation -66.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds