Wall clock time and date at job start Mon Mar 30 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81395 * 103.00274 * 2 1 4 4 C 1.50698 * 109.47611 * 179.97438 * 3 2 1 5 5 C 1.38112 * 120.03212 * 269.72684 * 4 3 2 6 6 C 1.38387 * 120.06077 * 179.78587 * 5 4 3 7 7 Cl 1.73596 * 119.94521 * 180.22851 * 6 5 4 8 8 C 1.38436 * 120.10870 * 0.46713 * 6 5 4 9 9 C 1.38074 * 120.05522 * 359.78266 * 8 6 5 10 10 C 1.38858 * 120.03088 * 89.99797 * 4 3 2 11 11 O 1.35769 * 120.05160 * 359.97438 * 10 4 3 12 12 C 1.34819 * 116.99789 * 174.37726 * 11 10 4 13 13 H 1.08003 * 120.00519 * 5.06487 * 12 11 10 14 14 C 1.38653 * 120.00174 * 185.06626 * 12 11 10 15 15 N 1.31557 * 120.00018 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00239 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47497 * 60.00078 * 16 14 12 18 18 H 1.48498 * 109.47401 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47150 * 299.99713 * 16 14 12 20 20 H 1.08991 * 109.47267 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46944 * 300.00670 * 1 2 3 22 22 H 1.08999 * 109.47066 * 59.99615 * 1 2 3 23 23 H 1.09005 * 109.47440 * 299.99975 * 3 2 1 24 24 H 1.09005 * 109.47305 * 59.99681 * 3 2 1 25 25 H 1.08005 * 119.96681 * 0.02562 * 5 4 3 26 26 H 1.07994 * 119.97023 * 179.76771 * 8 6 5 27 27 H 1.07998 * 120.02590 * 179.97438 * 9 8 6 28 28 H 0.96997 * 120.00411 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7195 1.9373 0.0006 5 6 4.4051 2.0211 1.1966 6 6 5.7807 2.1726 1.1979 7 17 6.6401 2.2716 2.7029 8 6 6.4719 2.2504 0.0010 9 6 5.7905 2.1724 -1.1974 10 6 4.4105 2.0155 -1.2012 11 8 3.7383 1.9385 -2.3783 12 6 4.4517 2.1377 -3.5048 13 1 5.5227 2.2661 -3.4501 14 6 3.8106 2.1778 -4.7335 15 7 2.5060 2.0219 -4.8001 16 14 4.7992 2.4531 -6.2943 17 1 5.7979 1.3647 -6.4463 18 1 3.8857 2.4543 -7.4652 19 1 5.4997 3.7600 -6.2125 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8899 23 1 1.8032 2.2371 -0.8900 24 1 1.8032 2.2371 0.8900 25 1 3.8677 1.9643 2.1317 26 1 7.5449 2.3725 0.0046 27 1 6.3302 2.2336 -2.1309 28 1 2.0574 2.0503 -5.6597 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735232860.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:43 Heat of formation + Delta-G solvation = -18.818079 kcal Electronic energy + Delta-G solvation = -14570.934244 eV Core-core repulsion = 11932.573303 eV Total energy + Delta-G solvation = -2638.360941 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.34432 -36.87116 -35.60413 -32.52784 -32.09920 -29.02426 -28.62450 -26.38294 -25.46756 -21.84689 -20.95282 -18.16462 -17.13839 -15.81693 -15.28510 -15.13052 -14.59856 -14.15412 -13.81080 -13.44577 -13.30999 -13.06029 -12.93782 -12.39363 -12.19603 -11.99782 -11.84632 -11.19372 -11.13914 -11.00117 -10.56697 -10.44395 -10.36672 -9.64019 -9.48732 -8.92316 -8.26835 -7.28992 -7.10690 -6.59027 -4.16382 1.59867 2.04391 2.48512 2.79579 3.07055 3.07350 3.10454 3.14062 3.85691 4.35683 4.94374 5.04909 5.24885 5.41897 5.44157 5.48005 5.60259 5.76695 5.98246 6.04657 6.12838 6.37375 6.57761 6.80969 6.86651 7.06407 7.18560 7.48718 7.83593 8.85394 9.50119 10.57221 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.007810 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.048318 B = 3584.076342 C = 5227.820519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.262 6.262 3 C -0.016 4.016 4 C -0.146 4.146 5 C -0.042 4.042 6 C -0.127 4.127 7 Cl -0.105 7.105 8 C -0.054 4.054 9 C -0.224 4.224 10 C 0.169 3.831 11 O -0.154 6.154 12 C -0.395 4.395 13 H 0.094 0.906 14 C 0.045 3.955 15 N -0.851 5.851 16 Si 0.942 3.058 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.269 1.269 20 H 0.093 0.907 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.138 0.862 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.937 0.213 7.675 7.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.034 6.034 3 C -0.163 4.163 4 C -0.149 4.149 5 C -0.063 4.063 6 C -0.154 4.154 7 Cl -0.077 7.077 8 C -0.073 4.073 9 C -0.244 4.244 10 C 0.112 3.888 11 O -0.055 6.055 12 C -0.471 4.471 13 H 0.111 0.889 14 C -0.161 4.161 15 N -0.484 5.484 16 Si 0.766 3.234 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.194 1.194 20 H 0.112 0.888 21 H 0.087 0.913 22 H 0.095 0.905 23 H 0.115 0.885 24 H 0.095 0.905 25 H 0.142 0.858 26 H 0.137 0.863 27 H 0.155 0.845 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.158 -0.731 7.526 7.650 hybrid contribution -0.188 1.145 -0.681 1.346 sum 0.970 0.414 6.845 6.926 Atomic orbital electron populations 1.23319 0.95908 1.05694 1.04433 1.87043 1.05518 1.12948 1.97905 1.21906 0.95645 0.93738 1.04971 1.18118 0.92969 1.13138 0.90682 1.20380 0.91788 0.97302 0.96862 1.20217 0.92038 1.17599 0.85577 1.98278 1.77737 1.97571 1.34074 1.20667 0.99108 0.97073 0.90488 1.21082 0.94035 1.11098 0.98170 1.19133 0.90514 0.91975 0.87181 1.83989 1.36241 1.74568 1.10676 1.21349 0.92257 1.51455 0.82028 0.88861 1.25306 0.96076 0.96153 0.98610 1.70021 1.07869 1.43956 1.26600 0.85765 0.78894 0.79361 0.79395 1.19304 1.20181 1.19366 0.88794 0.91258 0.90494 0.88523 0.90466 0.85833 0.86270 0.84471 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 10.76 101.05 1.09 -0.68 15 2 S -0.26 -4.87 22.36 -107.50 -2.40 -7.28 15 3 C -0.02 -0.29 5.85 36.00 0.21 -0.08 15 4 C -0.15 -2.95 5.16 -104.44 -0.54 -3.49 15 5 C -0.04 -0.76 9.48 -39.57 -0.37 -1.14 15 6 C -0.13 -2.25 6.32 -39.45 -0.25 -2.50 15 7 Cl -0.10 -1.61 28.95 -51.86 -1.50 -3.11 15 8 C -0.05 -0.97 9.82 -39.57 -0.39 -1.36 15 9 C -0.22 -4.64 9.17 -39.40 -0.36 -5.00 15 10 C 0.17 3.88 6.62 -39.11 -0.26 3.62 15 11 O -0.15 -4.08 8.81 0.02 0.00 -4.08 15 12 C -0.40 -10.39 9.49 30.89 0.29 -10.10 15 13 H 0.09 2.26 5.20 -52.48 -0.27 1.98 15 14 C 0.04 1.16 5.49 -17.52 -0.10 1.07 15 15 N -0.85 -23.60 13.67 55.48 0.76 -22.84 15 16 Si 0.94 19.55 29.55 -169.99 -5.02 14.53 15 17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 19 H -0.27 -5.41 7.11 56.52 0.40 -5.00 15 20 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15 21 H 0.07 0.84 8.14 -51.93 -0.42 0.41 15 22 H 0.08 1.12 8.14 -51.92 -0.42 0.70 15 23 H 0.10 2.01 7.54 -51.92 -0.39 1.62 15 24 H 0.08 1.21 8.08 -51.92 -0.42 0.79 15 25 H 0.12 1.96 8.06 -52.48 -0.42 1.53 15 26 H 0.12 1.85 8.06 -52.49 -0.42 1.43 15 27 H 0.14 2.78 5.64 -52.49 -0.30 2.48 15 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 LS Contribution 278.13 15.07 4.19 4.19 Total: -1.00 -27.91 278.13 -7.28 -35.19 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -2.63 Total: 3.06 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -0.68 Total: -19.66 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.76 Total: -22.84 kcal Atomic # 8 Polarization: -4.08 SS G_CDS: 0.00 Total: -4.08 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -2.40 Total: -7.28 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -1.50 Total: -3.11 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.91 -7.28 -35.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735232860.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.376 kcal (2) G-P(sol) polarization free energy of solvation -27.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds