Wall clock time and date at job start Mon Mar 30 2020 06:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81395 * 103.00274 * 2 1 4 4 C 1.50698 * 109.47611 * 179.97438 * 3 2 1 5 5 C 1.38112 * 120.03212 * 269.72684 * 4 3 2 6 6 C 1.38387 * 120.06077 * 179.78587 * 5 4 3 7 7 Cl 1.73596 * 119.94521 * 180.22851 * 6 5 4 8 8 C 1.38436 * 120.10870 * 0.46713 * 6 5 4 9 9 C 1.38074 * 120.05522 * 359.78266 * 8 6 5 10 10 C 1.38858 * 120.03088 * 89.99797 * 4 3 2 11 11 O 1.35769 * 120.05160 * 359.97438 * 10 4 3 12 12 C 1.34819 * 116.99789 * 174.37726 * 11 10 4 13 13 H 1.08003 * 120.00519 * 5.06487 * 12 11 10 14 14 C 1.38653 * 120.00174 * 185.06626 * 12 11 10 15 15 N 1.31557 * 120.00018 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00239 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47497 * 60.00078 * 16 14 12 18 18 H 1.48498 * 109.47401 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47150 * 299.99713 * 16 14 12 20 20 H 1.08991 * 109.47267 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.46944 * 300.00670 * 1 2 3 22 22 H 1.08999 * 109.47066 * 59.99615 * 1 2 3 23 23 H 1.09005 * 109.47440 * 299.99975 * 3 2 1 24 24 H 1.09005 * 109.47305 * 59.99681 * 3 2 1 25 25 H 1.08005 * 119.96681 * 0.02562 * 5 4 3 26 26 H 1.07994 * 119.97023 * 179.76771 * 8 6 5 27 27 H 1.07998 * 120.02590 * 179.97438 * 9 8 6 28 28 H 0.96997 * 120.00411 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7195 1.9373 0.0006 5 6 4.4051 2.0211 1.1966 6 6 5.7807 2.1726 1.1979 7 17 6.6401 2.2716 2.7029 8 6 6.4719 2.2504 0.0010 9 6 5.7905 2.1724 -1.1974 10 6 4.4105 2.0155 -1.2012 11 8 3.7383 1.9385 -2.3783 12 6 4.4517 2.1377 -3.5048 13 1 5.5227 2.2661 -3.4501 14 6 3.8106 2.1778 -4.7335 15 7 2.5060 2.0219 -4.8001 16 14 4.7992 2.4531 -6.2943 17 1 5.7979 1.3647 -6.4463 18 1 3.8857 2.4543 -7.4652 19 1 5.4997 3.7600 -6.2125 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8899 23 1 1.8032 2.2371 -0.8900 24 1 1.8032 2.2371 0.8900 25 1 3.8677 1.9643 2.1317 26 1 7.5449 2.3725 0.0046 27 1 6.3302 2.2336 -2.1309 28 1 2.0574 2.0503 -5.6597 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735232860.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:43 Heat of formation + Delta-G solvation = -33.671984 kcal Electronic energy + Delta-G solvation = -14571.578358 eV Core-core repulsion = 11932.573303 eV Total energy + Delta-G solvation = -2639.005055 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.99709 -38.49516 -37.04961 -34.33509 -33.70012 -30.60252 -29.82733 -27.96568 -27.27850 -23.49158 -22.51395 -19.93019 -18.84453 -17.34116 -16.84360 -16.75777 -16.23778 -15.78803 -15.36443 -14.91740 -14.67132 -14.53031 -14.44546 -13.86603 -13.63489 -13.56718 -13.34269 -12.76680 -12.68235 -12.56498 -12.16291 -11.87150 -11.84050 -11.25286 -10.99915 -10.75337 -9.79132 -8.93500 -8.57596 -8.47599 -6.13870 0.09782 0.46537 1.07894 1.34173 1.37733 1.46690 1.52124 1.76425 2.16919 2.73008 3.11470 3.37905 3.74158 3.91431 4.15706 4.29672 4.34859 4.37054 4.49982 4.52453 4.81772 4.86678 5.03189 5.09218 5.32247 5.40453 5.53767 5.89577 5.97502 6.96346 7.70911 8.73172 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.007810 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.048318 B = 3584.076342 C = 5227.820519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.315 6.315 3 C -0.006 4.006 4 C -0.149 4.149 5 C -0.041 4.041 6 C -0.115 4.115 7 Cl -0.073 7.073 8 C -0.051 4.051 9 C -0.233 4.233 10 C 0.138 3.862 11 O -0.200 6.200 12 C -0.417 4.417 13 H 0.104 0.896 14 C -0.012 4.012 15 N -0.907 5.907 16 Si 1.013 2.987 17 H -0.259 1.259 18 H -0.274 1.274 19 H -0.257 1.257 20 H 0.113 0.887 21 H 0.096 0.904 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.111 0.889 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.135 0.865 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 0.403 9.581 9.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.088 6.088 3 C -0.153 4.153 4 C -0.152 4.152 5 C -0.062 4.062 6 C -0.142 4.142 7 Cl -0.044 7.044 8 C -0.070 4.070 9 C -0.253 4.253 10 C 0.084 3.916 11 O -0.104 6.104 12 C -0.493 4.493 13 H 0.121 0.879 14 C -0.212 4.212 15 N -0.544 5.544 16 Si 0.833 3.167 17 H -0.183 1.183 18 H -0.199 1.199 19 H -0.181 1.181 20 H 0.132 0.868 21 H 0.115 0.885 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.129 0.871 25 H 0.170 0.830 26 H 0.168 0.832 27 H 0.153 0.847 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.343 -0.534 9.492 9.791 hybrid contribution -0.472 1.069 -0.877 1.462 sum 1.870 0.535 8.614 8.831 Atomic orbital electron populations 1.23377 0.91544 1.07310 1.05392 1.87111 1.10417 1.13233 1.97996 1.21833 0.94935 0.93592 1.04962 1.18454 0.93950 1.12186 0.90633 1.20677 0.92185 0.96254 0.97043 1.20455 0.92274 1.14568 0.86877 1.98300 1.76988 1.97309 1.31849 1.20951 1.00587 0.95887 0.89598 1.21209 0.93427 1.11277 0.99343 1.19693 0.91776 0.92930 0.87240 1.83981 1.37284 1.77567 1.11570 1.21810 0.92958 1.51814 0.82705 0.87888 1.26465 0.97137 0.95752 1.01831 1.70161 1.09822 1.47112 1.27290 0.84720 0.77400 0.79789 0.74839 1.18336 1.19853 1.18130 0.86828 0.88488 0.91290 0.91641 0.87108 0.83017 0.83242 0.84745 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.90 10.76 113.37 1.22 -1.68 15 2 S -0.31 -11.64 22.36 -56.49 -1.26 -12.91 15 3 C -0.01 -0.23 5.85 71.24 0.42 0.18 15 4 C -0.15 -5.99 5.16 -19.75 -0.10 -6.10 15 5 C -0.04 -1.38 9.48 22.28 0.21 -1.17 15 6 C -0.11 -3.72 6.32 22.35 0.14 -3.58 15 7 Cl -0.07 -1.96 28.95 -2.72 -0.08 -2.04 15 8 C -0.05 -1.73 9.82 22.28 0.22 -1.51 15 9 C -0.23 -9.61 9.17 22.39 0.21 -9.41 15 10 C 0.14 6.45 6.62 22.57 0.15 6.60 15 11 O -0.20 -11.16 8.81 -22.84 -0.20 -11.36 15 12 C -0.42 -22.91 9.49 67.92 0.64 -22.26 15 13 H 0.10 5.16 5.20 -2.91 -0.02 5.15 15 14 C -0.01 -0.67 5.49 84.83 0.47 -0.20 15 15 N -0.91 -52.98 13.67 21.61 0.30 -52.68 15 16 Si 1.01 41.04 29.55 68.60 2.03 43.07 15 17 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 18 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 19 H -0.26 -9.77 7.11 99.48 0.71 -9.07 15 20 H 0.11 2.60 8.14 -2.39 -0.02 2.58 15 21 H 0.10 2.08 8.14 -2.39 -0.02 2.06 15 22 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 23 H 0.06 2.85 7.54 -2.39 -0.02 2.83 15 24 H 0.11 3.29 8.08 -2.39 -0.02 3.27 15 25 H 0.15 4.23 8.06 -2.91 -0.02 4.21 15 26 H 0.15 4.13 8.06 -2.91 -0.02 4.11 15 27 H 0.13 5.52 5.64 -2.91 -0.02 5.50 15 28 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 Total: -1.00 -63.34 278.13 5.53 -57.82 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.18 Total: 17.23 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 3.57 Total: -39.12 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.30 Total: -52.68 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.20 Total: -11.36 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: -11.64 SS G_CDS: -1.26 Total: -12.91 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -63.34 5.53 -57.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735232860.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.143 kcal (2) G-P(sol) polarization free energy of solvation -63.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds