Wall clock time and date at job start Mon Mar 30 2020 06:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37795 * 119.91723 * 2 1 4 4 C 1.39752 * 119.88269 * 179.72368 * 3 2 1 5 5 C 1.47466 * 120.13498 * 180.02562 * 4 3 2 6 6 O 1.21528 * 119.99671 * 179.97438 * 5 4 3 7 7 O 1.34759 * 119.99960 * 359.97438 * 5 4 3 8 8 C 1.34866 * 116.99839 * 180.02562 * 7 5 4 9 9 H 1.07997 * 119.99752 * 0.02562 * 8 7 5 10 10 C 1.38796 * 119.99975 * 179.97438 * 8 7 5 11 11 N 1.31424 * 120.00100 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99982 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47278 * 60.00423 * 12 10 8 14 14 H 1.48506 * 109.47204 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47247 * 300.00385 * 12 10 8 16 16 C 1.39891 * 119.72481 * 359.97438 * 4 3 2 17 17 Cl 1.73602 * 120.08410 * 180.02562 * 16 4 3 18 18 C 1.37969 * 119.83689 * 0.02562 * 16 4 3 19 19 C 1.38627 * 120.11111 * 0.02562 * 18 16 4 20 20 F 1.35096 * 119.85933 * 180.02562 * 19 18 16 21 21 H 1.08997 * 109.46638 * 90.00247 * 1 2 3 22 22 H 1.08997 * 109.47019 * 210.00312 * 1 2 3 23 23 H 1.08994 * 109.47183 * 330.00162 * 1 2 3 24 24 H 1.08000 * 120.05685 * 359.73944 * 3 2 1 25 25 H 0.97006 * 120.00212 * 180.02562 * 11 10 8 26 26 H 1.08003 * 119.94583 * 180.02562 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1943 1.1943 0.0000 4 6 3.5918 1.1935 0.0058 5 6 4.3329 2.4684 0.0064 6 8 5.5482 2.4647 0.0120 7 8 3.6626 3.6374 0.0008 8 6 4.4005 4.7663 0.0012 9 1 5.4788 4.7065 0.0054 10 6 3.7741 6.0049 -0.0049 11 7 2.4618 6.0776 -0.0106 12 14 4.7961 7.5684 -0.0051 13 1 5.6578 7.5964 -1.2142 14 1 3.8950 8.7488 -0.0129 15 1 5.6479 7.6032 1.2107 16 6 4.2847 -0.0217 0.0122 17 17 6.0207 -0.0337 0.0202 18 6 3.5850 -1.2109 0.0121 19 6 2.1988 -1.2021 0.0052 20 9 1.5188 -2.3695 0.0057 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8899 0.5138 24 1 1.6539 2.1294 -0.0043 25 1 2.0240 6.9432 -0.0153 26 1 4.1182 -2.1501 0.0175 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759989581.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:39 Heat of formation + Delta-G solvation = -121.558082 kcal Electronic energy + Delta-G solvation = -16429.074025 eV Core-core repulsion = 13220.044768 eV Total energy + Delta-G solvation = -3209.029258 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.025 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.12856 -41.32325 -39.85631 -37.61784 -37.11710 -34.33006 -33.76154 -32.27144 -27.92797 -27.67887 -25.11603 -23.66012 -21.61696 -19.88407 -19.07438 -18.72025 -17.74566 -16.97746 -16.96438 -16.51677 -16.17943 -15.66038 -15.27661 -14.65354 -14.58244 -14.47898 -13.96682 -13.90490 -13.58376 -13.10606 -13.02078 -12.42723 -12.37402 -12.26197 -12.13513 -12.12340 -12.02003 -10.71262 -10.69910 -10.17424 -9.73083 -8.56215 -6.31380 -0.62296 -0.13200 0.94978 1.35350 1.35490 1.50423 1.62461 2.07040 2.40421 2.59730 2.98685 3.01573 3.46005 3.61292 3.87976 4.04920 4.35965 4.50969 4.67821 4.75126 4.78126 5.01255 5.11076 5.12329 5.20373 5.54648 5.80819 6.60890 6.88780 7.71435 8.63793 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.025453 B = 0.006454 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.821943 B = 4337.101424 C = 5421.778447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.116 4.116 3 C -0.036 4.036 4 C -0.119 4.119 5 C 0.427 3.573 6 O -0.550 6.550 7 O -0.230 6.230 8 C -0.414 4.414 9 H 0.084 0.916 10 C 0.000 4.000 11 N -0.895 5.895 12 Si 1.016 2.984 13 H -0.263 1.263 14 H -0.259 1.259 15 H -0.263 1.263 16 C 0.018 3.982 17 Cl -0.033 7.033 18 C -0.142 4.142 19 C 0.136 3.864 20 F -0.118 7.118 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.147 0.853 25 H 0.280 0.720 26 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.846 -12.740 -0.010 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.117 4.117 3 C -0.055 4.055 4 C -0.121 4.121 5 C 0.275 3.725 6 O -0.448 6.448 7 O -0.139 6.139 8 C -0.490 4.490 9 H 0.102 0.898 10 C -0.201 4.201 11 N -0.531 5.531 12 Si 0.835 3.165 13 H -0.187 1.187 14 H -0.183 1.183 15 H -0.187 1.187 16 C -0.009 4.009 17 Cl -0.004 7.004 18 C -0.161 4.161 19 C 0.117 3.883 20 F -0.096 7.096 21 H 0.110 0.890 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.165 0.835 25 H 0.090 0.910 26 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.593 -12.619 -0.007 13.121 hybrid contribution 0.708 0.624 -0.002 0.944 sum -2.885 -11.995 -0.009 12.337 Atomic orbital electron populations 1.20863 0.86875 1.04774 1.04421 1.20207 0.99305 0.90294 1.01922 1.21282 0.91204 0.99302 0.93677 1.19170 0.94375 0.89872 1.08673 1.21299 0.86572 0.85685 0.78929 1.90689 1.15282 1.88145 1.50638 1.83894 1.40095 1.13505 1.76386 1.21439 0.91611 0.81601 1.54336 0.89809 1.26487 0.97575 1.01400 0.94657 1.70034 1.09465 1.27648 1.45990 0.84707 0.77426 0.74667 0.79739 1.18721 1.18284 1.18707 1.20715 0.86549 0.92689 1.00962 1.98402 1.07227 1.98675 1.96095 1.21021 0.92431 0.98189 1.04441 1.17393 0.88983 0.81307 1.00665 1.91532 1.79509 1.45245 1.93352 0.88996 0.89355 0.89866 0.83520 0.91012 0.80236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.83 71.24 0.70 -1.49 15 2 C -0.12 -3.07 5.88 -19.86 -0.12 -3.18 15 3 C -0.04 -1.24 9.26 22.53 0.21 -1.03 15 4 C -0.12 -4.80 5.88 -20.08 -0.12 -4.92 15 5 C 0.43 22.09 7.82 70.25 0.55 22.64 15 6 O -0.55 -30.14 13.21 19.75 0.26 -29.88 15 7 O -0.23 -13.43 8.99 10.95 0.10 -13.33 15 8 C -0.41 -24.82 9.65 67.95 0.66 -24.16 15 9 H 0.08 5.09 6.86 -2.91 -0.02 5.07 15 10 C 0.00 0.00 5.49 84.89 0.47 0.47 15 11 N -0.89 -51.23 13.67 21.63 0.30 -50.94 15 12 Si 1.02 42.71 29.55 68.60 2.03 44.74 15 13 H -0.26 -10.70 7.11 99.48 0.71 -10.00 15 14 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 15 H -0.26 -10.69 7.11 99.48 0.71 -9.99 15 16 C 0.02 0.63 6.35 22.61 0.14 0.78 15 17 Cl -0.03 -1.20 26.02 -2.72 -0.07 -1.27 15 18 C -0.14 -3.68 9.79 22.30 0.22 -3.46 15 19 C 0.14 3.37 7.25 22.47 0.16 3.53 15 20 F -0.12 -2.55 16.46 44.97 0.74 -1.81 15 21 H 0.09 1.56 8.14 -2.39 -0.02 1.54 15 22 H 0.09 1.42 7.62 -2.39 -0.02 1.40 15 23 H 0.08 1.58 8.08 -2.39 -0.02 1.56 15 24 H 0.15 5.41 7.61 -2.91 -0.02 5.39 15 25 H 0.28 14.57 8.31 -92.70 -0.77 13.80 15 26 H 0.18 3.49 8.06 -2.91 -0.02 3.47 15 Total: -1.00 -67.80 261.10 7.45 -60.35 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.23 Total: 2.96 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 2.87 Total: -10.83 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.30 Total: -50.94 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: 0.36 Total: -43.21 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.74 Total: -1.81 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.07 Total: -1.27 kcal Total: -67.80 7.45 -60.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759989581.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.208 kcal (2) G-P(sol) polarization free energy of solvation -67.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds