Wall clock time and date at job start Mon Mar 30 2020 07:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47465 * 2 1 4 4 C 1.50699 * 109.47178 * 240.00075 * 2 1 3 5 5 H 1.08000 * 120.00005 * 239.99609 * 4 2 1 6 6 C 1.37872 * 120.00169 * 60.00113 * 4 2 1 7 7 N 1.31519 * 119.99885 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00287 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47075 * 60.00178 * 8 6 4 10 10 H 1.48504 * 109.47506 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47234 * 300.00448 * 8 6 4 12 12 N 1.46499 * 109.46974 * 119.99977 * 2 1 3 13 13 N 1.40095 * 120.00057 * 270.00102 * 12 2 1 14 14 C 1.29714 * 120.00039 * 180.02562 * 13 12 2 15 15 C 1.47546 * 120.00081 * 180.02562 * 14 13 12 16 16 C 1.34834 * 123.22183 * 180.02562 * 15 14 13 17 17 S 1.75667 * 110.02036 * 179.97438 * 16 15 14 18 18 C 1.75612 * 91.81132 * 0.02562 * 17 16 15 19 19 C 1.32941 * 110.52527 * 359.75426 * 18 17 16 20 20 Cl 1.73598 * 122.95692 * 180.21210 * 19 18 17 21 21 H 1.09000 * 109.47198 * 300.00324 * 1 2 3 22 22 H 1.09005 * 109.47252 * 59.99847 * 1 2 3 23 23 H 1.09001 * 109.47024 * 179.97438 * 1 2 3 24 24 H 0.96999 * 119.99698 * 179.97438 * 7 6 4 25 25 H 0.96999 * 119.99984 * 90.00295 * 12 2 1 26 26 H 1.08004 * 120.00229 * 0.26738 * 14 13 12 27 27 H 1.08006 * 124.99019 * 359.97438 * 16 15 14 28 28 H 1.07999 * 124.73870 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0082 10 1 1.8270 -0.4199 -5.2205 11 1 3.8076 -1.1190 -4.0077 12 7 2.0183 -0.6906 1.1962 13 7 2.2517 0.0299 2.3748 14 6 2.6845 -0.5815 3.4337 15 6 2.9299 0.1772 4.6752 16 6 3.3795 -0.3916 5.8119 17 16 3.5483 0.8253 7.0675 18 6 2.9915 2.0949 5.9894 19 6 2.7165 1.5983 4.7873 20 17 2.1458 2.5745 3.4702 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7088 1.1613 -3.4844 25 1 2.1799 -1.6467 1.1721 26 1 2.8691 -1.6453 3.4056 27 1 3.6030 -1.4414 5.9329 28 1 2.8909 3.1347 6.2634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771881885.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:51 Heat of formation + Delta-G solvation = 48.517656 kcal Electronic energy + Delta-G solvation = -14224.029288 eV Core-core repulsion = 11620.880995 eV Total energy + Delta-G solvation = -2603.148293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.029 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.14616 -37.77968 -36.82832 -35.55070 -33.12731 -30.90639 -28.94341 -27.30131 -24.89895 -22.93539 -22.13684 -19.97536 -19.17616 -18.10836 -17.32393 -16.81986 -16.46401 -15.45089 -14.88538 -14.54145 -14.42248 -14.09644 -13.83640 -13.58552 -13.32871 -12.90094 -12.75601 -12.55222 -12.28658 -12.19866 -12.10224 -12.03311 -11.73617 -11.12150 -10.62353 -10.56503 -9.99890 -9.31948 -8.32930 -8.15671 -6.34638 -0.09893 0.45544 0.81970 0.88672 1.42405 1.44495 1.52348 1.80196 2.24480 2.27112 2.50867 3.11447 3.63458 4.16252 4.49362 4.59316 4.63199 4.78516 4.98374 5.02058 5.13644 5.18943 5.36226 5.54913 5.79365 5.88622 6.18969 6.42686 6.85681 7.36988 7.82956 8.87563 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.042569 B = 0.004483 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.591779 B = 6244.695548 C = 6598.952908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.312 3.688 3 H -0.002 1.002 4 C -0.548 4.548 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.640 5.640 13 N -0.218 5.218 14 C 0.024 3.976 15 C -0.059 4.059 16 C -0.188 4.188 17 S 0.199 5.801 18 C -0.220 4.220 19 C -0.061 4.061 20 Cl -0.052 7.052 21 H 0.015 0.985 22 H 0.067 0.933 23 H 0.030 0.970 24 H 0.266 0.734 25 H 0.373 0.627 26 H 0.130 0.870 27 H 0.203 0.797 28 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.028 -1.465 19.052 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.208 3.792 3 H 0.016 0.984 4 C -0.587 4.587 5 H 0.080 0.920 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.377 5.377 13 N -0.029 5.029 14 C -0.188 4.188 15 C -0.074 4.074 16 C -0.327 4.327 17 S 0.461 5.539 18 C -0.356 4.356 19 C -0.101 4.101 20 Cl -0.023 7.023 21 H 0.034 0.966 22 H 0.086 0.914 23 H 0.050 0.950 24 H 0.076 0.924 25 H 0.210 0.790 26 H 0.147 0.853 27 H 0.220 0.780 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 5.003 -0.287 19.723 20.350 hybrid contribution -0.216 -1.132 -2.531 2.782 sum 4.787 -1.419 17.192 17.902 Atomic orbital electron populations 1.22013 0.98990 0.99001 0.99470 1.18026 0.90048 0.91432 0.79666 0.98420 1.21518 1.32500 1.13527 0.91192 0.91969 1.25727 0.94890 0.95647 1.01974 1.70024 1.36875 1.23778 1.24693 0.85428 0.78570 0.78695 0.77811 1.19158 1.20696 1.19802 1.48600 1.74337 1.07655 1.07082 1.74310 1.06626 1.27788 0.94133 1.23587 1.06321 0.97805 0.91050 1.18282 1.04840 0.90543 0.93702 1.25929 1.06255 1.05441 0.95118 1.83845 1.64155 0.94487 1.11436 1.25601 1.08205 1.06025 0.95755 1.21233 1.05985 0.92080 0.90793 1.98409 1.87307 1.69115 1.47498 0.96612 0.91396 0.95038 0.92439 0.79030 0.85311 0.77967 0.79332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.02 9.29 71.98 0.67 -6.35 15 2 C 0.31 16.73 3.23 44.24 0.14 16.88 15 3 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 15 4 C -0.55 -30.31 8.74 25.60 0.22 -30.09 15 5 H 0.06 3.31 7.79 -2.91 -0.02 3.28 15 6 C 0.02 0.98 5.30 84.65 0.45 1.43 15 7 N -0.92 -52.86 11.32 21.45 0.24 -52.62 15 8 Si 0.97 43.06 29.54 68.60 2.03 45.09 15 9 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 12 N -0.64 -29.27 6.10 -172.53 -1.05 -30.32 15 13 N -0.22 -9.16 9.08 -52.13 -0.47 -9.63 15 14 C 0.02 0.80 10.87 87.46 0.95 1.75 15 15 C -0.06 -1.66 5.94 -20.11 -0.12 -1.78 15 16 C -0.19 -3.57 11.03 67.04 0.74 -2.83 15 17 S 0.20 3.09 23.26 -56.49 -1.31 1.77 15 18 C -0.22 -4.72 11.00 66.65 0.73 -3.98 15 19 C -0.06 -1.77 6.45 22.59 0.15 -1.63 15 20 Cl -0.05 -1.85 26.88 -2.72 -0.07 -1.92 15 21 H 0.01 0.75 8.14 -2.39 -0.02 0.73 15 22 H 0.07 3.80 6.07 -2.38 -0.01 3.78 15 23 H 0.03 1.53 8.14 -2.39 -0.02 1.51 15 24 H 0.27 14.54 8.31 -92.71 -0.77 13.77 15 25 H 0.37 15.50 8.58 -213.32 -1.83 13.67 15 26 H 0.13 3.55 8.02 -2.91 -0.02 3.53 15 27 H 0.20 2.50 8.06 -2.91 -0.02 2.48 15 28 H 0.19 3.21 8.06 -2.91 -0.02 3.18 15 Total: -1.00 -64.43 278.66 2.64 -61.78 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -0.65 Total: 12.45 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 3.93 Total: -26.60 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -1.28 Total: -92.57 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.31 Total: 1.77 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.07 Total: -1.92 kcal Total: -64.43 2.64 -61.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771881885.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.302 kcal (2) G-P(sol) polarization free energy of solvation -64.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds