Wall clock time and date at job start Mon Mar 30 2020 07:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47412 * 2 1 4 4 C 1.50702 * 109.46917 * 239.99975 * 2 1 3 5 5 H 1.08004 * 119.99764 * 239.99709 * 4 2 1 6 6 C 1.37870 * 120.00021 * 60.00253 * 4 2 1 7 7 N 1.31515 * 120.00196 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47289 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46871 * 119.99822 * 8 6 4 11 11 H 1.48497 * 109.47442 * 239.99769 * 8 6 4 12 12 N 1.46505 * 109.46964 * 120.00019 * 2 1 3 13 13 N 1.40098 * 119.99863 * 269.99646 * 12 2 1 14 14 C 1.29987 * 119.99794 * 180.02562 * 13 12 2 15 15 C 1.46758 * 120.00221 * 180.02562 * 14 13 12 16 16 C 1.36202 * 125.32823 * 179.97438 * 15 14 13 17 17 C 1.37885 * 114.41336 * 179.97438 * 16 15 14 18 18 C 1.33736 * 115.16024 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 125.00912 * 179.97438 * 18 17 16 20 20 S 1.75819 * 109.98384 * 0.02562 * 18 17 16 21 21 H 1.09001 * 109.47206 * 299.99764 * 1 2 3 22 22 H 1.09004 * 109.47197 * 59.99962 * 1 2 3 23 23 H 1.08996 * 109.47412 * 179.97438 * 1 2 3 24 24 H 0.97001 * 120.00228 * 179.97438 * 7 6 4 25 25 H 0.97001 * 119.99758 * 89.99972 * 12 2 1 26 26 H 1.08007 * 119.99915 * 359.97438 * 14 13 12 27 27 H 1.07996 * 122.79427 * 359.96734 * 16 15 14 28 28 H 1.08003 * 122.41530 * 179.73039 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1472 -2.2864 -3.6038 10 1 1.1676 -1.5866 -4.8164 11 1 3.1472 -0.1859 -4.8161 12 7 2.0183 -0.6906 1.1962 13 7 2.2518 0.0299 2.3748 14 6 2.6856 -0.5828 3.4360 15 6 2.9297 0.1718 4.6708 16 6 3.3817 -0.3580 5.8413 17 6 3.5320 0.5579 6.8610 18 6 3.2123 1.8176 6.5455 19 17 3.3045 3.1700 7.6300 20 16 2.6833 1.9019 4.8709 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7087 1.1613 -3.4844 25 1 2.1799 -1.6468 1.1722 26 1 2.8655 -1.6474 3.4092 27 1 3.6037 -1.4081 5.9609 28 1 3.8782 0.2774 7.8448 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771882735.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:48 Heat of formation + Delta-G solvation = 61.845817 kcal Electronic energy + Delta-G solvation = -13801.805234 eV Core-core repulsion = 11199.234894 eV Total energy + Delta-G solvation = -2602.570341 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.029 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.89841 -36.78773 -36.26511 -34.11562 -31.67158 -29.47138 -27.00623 -25.31518 -24.11128 -21.46294 -20.39114 -19.34671 -17.76068 -16.49564 -16.08100 -15.35114 -15.03657 -13.98713 -13.80965 -13.31133 -13.04371 -12.74923 -12.60705 -12.42340 -11.83088 -11.38998 -11.18944 -11.10453 -10.87984 -10.63428 -10.60021 -10.32554 -10.27505 -9.75970 -9.13350 -8.75540 -8.54521 -8.44940 -6.92498 -6.21029 -4.29982 0.64901 1.20279 1.98851 2.29656 2.35228 3.19129 3.26265 3.27708 3.29777 3.58491 4.29859 5.07806 5.12195 5.34022 5.39701 5.80429 5.91419 6.11717 6.32699 6.57004 6.80312 6.90683 7.04666 7.47705 7.66760 7.74982 8.02103 8.17414 8.76066 9.10037 9.37124 10.84918 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.048174 B = 0.003615 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.084976 B = 7743.187593 C = 7991.512010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.294 3.706 3 H 0.044 0.956 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.904 3.096 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.610 5.610 13 N -0.188 5.188 14 C 0.002 3.998 15 C -0.084 4.084 16 C -0.150 4.150 17 C -0.108 4.108 18 C -0.182 4.182 19 Cl -0.029 7.029 20 S 0.204 5.796 21 H 0.013 0.987 22 H 0.092 0.908 23 H 0.027 0.973 24 H 0.265 0.735 25 H 0.372 0.628 26 H 0.118 0.882 27 H 0.147 0.853 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -0.208 16.349 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.192 3.808 3 H 0.062 0.938 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.732 3.268 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.346 5.346 13 N -0.004 5.004 14 C -0.206 4.206 15 C -0.205 4.205 16 C -0.183 4.183 17 C -0.140 4.140 18 C -0.327 4.327 19 Cl 0.000 7.000 20 S 0.466 5.534 21 H 0.032 0.968 22 H 0.110 0.890 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.209 0.791 26 H 0.135 0.865 27 H 0.165 0.835 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.750 2.191 14.761 15.174 hybrid contribution 1.041 -2.702 0.382 2.920 sum 3.791 -0.511 15.142 15.618 Atomic orbital electron populations 1.22211 0.98705 0.99363 1.00747 1.18650 0.90360 0.93697 0.78083 0.93816 1.21233 1.32445 1.13401 0.90062 0.92049 1.24868 0.94760 0.94993 0.99033 1.69894 1.35866 1.22465 1.23970 0.86343 0.78630 0.79519 0.82325 1.19752 1.20784 1.20767 1.49159 1.70938 1.08018 1.06491 1.74022 1.03802 1.28381 0.94191 1.22527 1.10778 0.96729 0.90539 1.22941 1.05290 0.95971 0.96330 1.20271 1.06052 1.00971 0.91013 1.19904 1.02472 0.90556 1.01103 1.25399 1.16311 0.93074 0.97955 1.98337 1.97182 1.42749 1.61776 1.84801 1.62790 1.04699 1.01098 0.96756 0.88962 0.95386 0.92496 0.79129 0.86459 0.83529 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.29 37.16 0.35 -3.29 15 2 C 0.29 7.30 3.23 -69.08 -0.22 7.08 15 3 H 0.04 1.21 8.14 -51.93 -0.42 0.79 15 4 C -0.53 -13.94 8.74 -34.44 -0.30 -14.24 15 5 H 0.06 1.57 7.79 -52.48 -0.41 1.16 15 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 15 7 N -0.88 -24.21 11.32 55.43 0.63 -23.58 15 8 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 15 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 12 N -0.61 -13.01 6.10 -5.88 -0.04 -13.05 15 13 N -0.19 -3.73 11.26 32.02 0.36 -3.37 15 14 C 0.00 0.04 10.93 -14.89 -0.16 -0.13 15 15 C -0.08 -1.22 6.44 -36.87 -0.24 -1.45 15 16 C -0.15 -1.76 10.17 -40.44 -0.41 -2.17 15 17 C -0.11 -1.22 10.09 -41.29 -0.42 -1.63 15 18 C -0.18 -2.28 7.08 29.15 0.21 -2.07 15 19 Cl -0.03 -0.32 29.28 -51.86 -1.52 -1.84 15 20 S 0.20 2.92 23.07 -107.50 -2.48 0.44 15 21 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 15 22 H 0.09 2.39 6.07 -51.93 -0.32 2.08 15 23 H 0.03 0.64 8.14 -51.93 -0.42 0.21 15 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 15 25 H 0.37 7.25 8.58 -182.60 -1.57 5.68 15 26 H 0.12 1.63 8.03 -52.48 -0.42 1.21 15 27 H 0.15 1.36 8.06 -52.49 -0.42 0.94 15 28 H 0.14 1.27 8.06 -52.48 -0.42 0.84 15 LS Contribution 282.48 15.07 4.26 4.26 Total: -1.00 -27.14 282.48 -9.07 -36.20 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.96 Total: 1.81 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -1.30 Total: -16.24 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.95 Total: -40.00 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.48 Total: 0.44 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.52 Total: -1.84 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.14 -9.07 -36.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882735.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.048 kcal (2) G-P(sol) polarization free energy of solvation -27.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds