Wall clock time and date at job start Mon Mar 30 2020 07:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47412 * 2 1 4 4 C 1.50702 * 109.46917 * 239.99975 * 2 1 3 5 5 H 1.08004 * 119.99764 * 239.99709 * 4 2 1 6 6 C 1.37870 * 120.00021 * 60.00253 * 4 2 1 7 7 N 1.31515 * 120.00196 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47289 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46871 * 119.99822 * 8 6 4 11 11 H 1.48497 * 109.47442 * 239.99769 * 8 6 4 12 12 N 1.46505 * 109.46964 * 120.00019 * 2 1 3 13 13 N 1.40098 * 119.99863 * 269.99646 * 12 2 1 14 14 C 1.29987 * 119.99794 * 180.02562 * 13 12 2 15 15 C 1.46758 * 120.00221 * 180.02562 * 14 13 12 16 16 C 1.36202 * 125.32823 * 179.97438 * 15 14 13 17 17 C 1.37885 * 114.41336 * 179.97438 * 16 15 14 18 18 C 1.33736 * 115.16024 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 125.00912 * 179.97438 * 18 17 16 20 20 S 1.75819 * 109.98384 * 0.02562 * 18 17 16 21 21 H 1.09001 * 109.47206 * 299.99764 * 1 2 3 22 22 H 1.09004 * 109.47197 * 59.99962 * 1 2 3 23 23 H 1.08996 * 109.47412 * 179.97438 * 1 2 3 24 24 H 0.97001 * 120.00228 * 179.97438 * 7 6 4 25 25 H 0.97001 * 119.99758 * 89.99972 * 12 2 1 26 26 H 1.08007 * 119.99915 * 359.97438 * 14 13 12 27 27 H 1.07996 * 122.79427 * 359.96734 * 16 15 14 28 28 H 1.08003 * 122.41530 * 179.73039 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1472 -2.2864 -3.6038 10 1 1.1676 -1.5866 -4.8164 11 1 3.1472 -0.1859 -4.8161 12 7 2.0183 -0.6906 1.1962 13 7 2.2518 0.0299 2.3748 14 6 2.6856 -0.5828 3.4360 15 6 2.9297 0.1718 4.6708 16 6 3.3817 -0.3580 5.8413 17 6 3.5320 0.5579 6.8610 18 6 3.2123 1.8176 6.5455 19 17 3.3045 3.1700 7.6300 20 16 2.6833 1.9019 4.8709 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 0.7087 1.1613 -3.4844 25 1 2.1799 -1.6468 1.1722 26 1 2.8655 -1.6474 3.4092 27 1 3.6037 -1.4081 5.9609 28 1 3.8782 0.2774 7.8448 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771882735.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:48 Heat of formation + Delta-G solvation = 46.362618 kcal Electronic energy + Delta-G solvation = -13802.476636 eV Core-core repulsion = 11199.234894 eV Total energy + Delta-G solvation = -2603.241743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.029 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.95478 -38.10320 -37.43273 -35.84608 -33.40046 -30.87175 -28.46766 -27.30296 -25.25711 -22.85778 -22.08376 -20.37576 -19.23611 -18.04389 -17.42775 -16.89988 -16.50028 -15.57123 -14.89855 -14.57077 -14.53298 -14.21044 -14.05354 -13.50372 -13.41858 -12.94846 -12.88578 -12.65752 -12.33949 -12.18596 -12.13786 -12.02904 -11.59675 -11.18256 -10.97113 -10.60718 -9.88232 -9.53739 -8.41448 -8.18418 -6.36292 -0.43094 0.16126 0.96503 1.28919 1.29325 1.42451 1.43505 1.55212 2.09124 2.11525 2.44821 3.10173 3.90932 4.31603 4.44155 4.64475 4.72466 4.93295 4.96267 5.03601 5.10925 5.31544 5.40669 5.52690 5.73660 5.84559 6.13310 6.36600 6.81526 7.35155 7.68001 8.86168 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.048174 B = 0.003615 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.084976 B = 7743.187593 C = 7991.512010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.306 3.694 3 H 0.001 0.999 4 C -0.546 4.546 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.281 1.281 12 N -0.631 5.631 13 N -0.246 5.246 14 C 0.048 3.952 15 C -0.127 4.127 16 C -0.108 4.108 17 C -0.107 4.107 18 C -0.172 4.172 19 Cl -0.016 7.016 20 S 0.150 5.850 21 H 0.017 0.983 22 H 0.069 0.931 23 H 0.032 0.968 24 H 0.267 0.733 25 H 0.378 0.622 26 H 0.145 0.855 27 H 0.183 0.817 28 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -1.820 18.491 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.202 3.798 3 H 0.018 0.982 4 C -0.585 4.585 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.797 3.203 9 H -0.190 1.190 10 H -0.202 1.202 11 H -0.207 1.207 12 N -0.369 5.369 13 N -0.057 5.057 14 C -0.162 4.162 15 C -0.247 4.247 16 C -0.142 4.142 17 C -0.139 4.139 18 C -0.317 4.317 19 Cl 0.013 6.987 20 S 0.413 5.587 21 H 0.036 0.964 22 H 0.088 0.912 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.216 0.784 26 H 0.162 0.838 27 H 0.200 0.800 28 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.958 0.584 16.912 17.378 hybrid contribution 0.779 -2.149 0.141 2.290 sum 4.736 -1.564 17.053 17.767 Atomic orbital electron populations 1.22025 0.98674 0.99238 0.99689 1.18160 0.90346 0.91635 0.79639 0.98156 1.21531 1.32460 1.13507 0.90978 0.91831 1.25731 0.94904 0.95666 1.02022 1.70024 1.36855 1.23750 1.24660 0.85302 0.78129 0.78437 0.78478 1.18969 1.20220 1.20680 1.48504 1.73972 1.07856 1.06536 1.74063 1.07893 1.29061 0.94680 1.23112 1.05256 0.98065 0.89774 1.22949 1.09294 0.95554 0.96892 1.20756 1.01474 1.02610 0.89369 1.20315 1.01501 0.89634 1.02407 1.25557 1.15160 0.94119 0.96883 1.98351 1.97034 1.42402 1.60950 1.85057 1.63948 1.06213 1.03467 0.96407 0.91238 0.94846 0.92392 0.78438 0.83837 0.80006 0.80476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.84 9.29 71.98 0.67 -6.17 15 2 C 0.31 15.86 3.23 44.24 0.14 16.01 15 3 H 0.00 0.03 8.14 -2.39 -0.02 0.01 15 4 C -0.55 -29.28 8.74 25.60 0.22 -29.06 15 5 H 0.06 3.29 7.79 -2.91 -0.02 3.27 15 6 C 0.02 0.92 5.30 84.65 0.45 1.36 15 7 N -0.91 -51.57 11.32 21.44 0.24 -51.33 15 8 Si 0.97 42.14 29.54 68.60 2.03 44.17 15 9 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 10 H -0.28 -11.68 7.11 99.48 0.71 -10.97 15 11 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 12 N -0.63 -27.65 6.10 -172.52 -1.05 -28.71 15 13 N -0.25 -9.86 11.26 -52.59 -0.59 -10.46 15 14 C 0.05 1.49 10.93 87.19 0.95 2.44 15 15 C -0.13 -3.37 6.44 24.02 0.15 -3.22 15 16 C -0.11 -2.06 10.17 21.71 0.22 -1.84 15 17 C -0.11 -1.94 10.09 21.16 0.21 -1.72 15 18 C -0.17 -3.85 7.08 66.80 0.47 -3.37 15 19 Cl -0.02 -0.32 29.28 -2.72 -0.08 -0.40 15 20 S 0.15 4.23 23.07 -56.49 -1.30 2.92 15 21 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 22 H 0.07 3.77 6.07 -2.38 -0.01 3.75 15 23 H 0.03 1.56 8.14 -2.39 -0.02 1.55 15 24 H 0.27 14.16 8.31 -92.71 -0.77 13.39 15 25 H 0.38 14.89 8.58 -213.32 -1.83 13.06 15 26 H 0.14 3.57 8.03 -2.91 -0.02 3.55 15 27 H 0.18 2.24 8.06 -2.91 -0.02 2.22 15 28 H 0.18 2.11 8.06 -2.91 -0.02 2.08 15 Total: -1.00 -60.50 282.48 2.09 -58.41 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -0.65 Total: 10.97 kcal Atomic # 6 Polarization: -29.08 SS G_CDS: 3.50 Total: -25.58 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -1.40 Total: -90.49 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.30 Total: 2.92 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -60.50 2.09 -58.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771882735.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.770 kcal (2) G-P(sol) polarization free energy of solvation -60.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds