Wall clock time and date at job start Mon Mar 30 2020 06:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 120.00076 * 2 1 4 4 H 1.48494 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46977 * 299.99746 * 3 2 1 6 6 H 1.48500 * 109.47251 * 59.99586 * 3 2 1 7 7 C 1.38755 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00068 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00272 * 0.02562 * 7 2 1 10 10 C 1.34310 * 117.00349 * 179.97438 * 9 7 2 11 11 O 1.21213 * 119.99644 * 0.02562 * 10 9 7 12 12 C 1.50693 * 119.99805 * 180.27868 * 10 9 7 13 13 C 1.50708 * 109.46934 * 179.72720 * 12 10 9 14 14 C 1.38259 * 119.97302 * 269.72077 * 13 12 10 15 15 C 1.38221 * 120.06159 * 179.76719 * 14 13 12 16 16 C 1.38325 * 120.00956 * 0.50946 * 15 14 13 17 17 Cl 1.73595 * 120.02332 * 179.72392 * 16 15 14 18 18 C 1.38544 * 119.95081 * 359.74584 * 16 15 14 19 19 F 1.35094 * 120.03240 * 180.02562 * 18 16 15 20 20 C 1.38189 * 119.97652 * 90.00086 * 13 12 10 21 21 H 0.96993 * 120.00374 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47536 * 299.72288 * 12 10 9 23 23 H 1.08994 * 109.47555 * 59.72727 * 12 10 9 24 24 H 1.08008 * 119.97207 * 0.02690 * 14 13 12 25 25 H 1.08002 * 119.99303 * 180.23375 * 15 14 13 26 26 H 1.08007 * 120.00858 * 359.95125 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 3.7084 1.3464 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3965 1.2124 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0010 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4966 0.0005 11 8 3.2756 -3.4330 0.0010 12 6 1.3810 -4.8392 -0.0058 13 6 2.4190 -5.9319 -0.0112 14 6 2.8903 -6.4309 -1.2114 15 6 3.8458 -7.4297 -1.2185 16 6 4.3238 -7.9383 -0.0243 17 17 5.5185 -9.1977 -0.0329 18 6 3.8480 -7.4423 1.1786 19 9 4.3140 -7.9375 2.3459 20 6 2.8947 -6.4382 1.1833 21 1 -0.4850 0.8400 -0.0004 22 1 0.7584 -4.9341 0.8839 23 1 0.7581 -4.9255 -0.8960 24 1 2.5146 -6.0371 -2.1443 25 1 4.2159 -7.8161 -2.1567 26 1 2.5233 -6.0505 2.1205 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790718915.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:15 Heat of formation + Delta-G solvation = -130.740636 kcal Electronic energy + Delta-G solvation = -16069.634423 eV Core-core repulsion = 12860.206980 eV Total energy + Delta-G solvation = -3209.427443 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.025 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.06249 -41.21817 -40.06228 -37.74725 -37.14844 -34.30363 -33.72494 -31.77845 -29.26157 -27.18137 -24.11904 -23.55484 -21.66838 -19.85900 -18.61765 -18.43006 -17.85913 -17.47783 -16.88189 -16.58290 -16.48681 -16.21083 -15.20608 -14.86333 -14.58256 -14.35139 -13.96082 -13.62483 -13.57823 -13.14145 -12.77262 -12.54603 -12.43313 -12.30149 -12.16310 -11.99616 -11.94725 -11.05762 -10.68560 -10.04269 -9.69954 -8.52981 -6.32121 -0.17846 0.03867 0.90613 1.30913 1.35715 1.53107 1.66478 2.07377 2.31344 2.93096 2.98599 3.02568 3.46122 3.62336 4.01671 4.11454 4.34637 4.46251 4.64197 4.69970 4.84383 4.90747 4.99464 5.20678 5.34967 5.62568 5.85000 6.70198 6.93144 7.78390 8.67614 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.044019 B = 0.004180 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.934497 B = 6697.487349 C = 6742.584934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.003 4.003 3 Si 1.013 2.987 4 H -0.267 1.267 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.417 4.417 8 H 0.080 0.920 9 O -0.244 6.244 10 C 0.399 3.601 11 O -0.578 6.578 12 C -0.060 4.060 13 C -0.038 4.038 14 C -0.102 4.102 15 C -0.076 4.076 16 C -0.083 4.083 17 Cl -0.050 7.050 18 C 0.092 3.908 19 F -0.135 7.135 20 C -0.136 4.136 21 H 0.278 0.722 22 H 0.129 0.871 23 H 0.138 0.862 24 H 0.160 0.840 25 H 0.173 0.827 26 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.859 -14.762 -1.965 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.204 4.204 3 Si 0.833 3.167 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.493 4.493 8 H 0.098 0.902 9 O -0.153 6.153 10 C 0.247 3.753 11 O -0.476 6.476 12 C -0.097 4.097 13 C -0.039 4.039 14 C -0.120 4.120 15 C -0.094 4.094 16 C -0.110 4.110 17 Cl -0.021 7.021 18 C 0.072 3.928 19 F -0.114 7.114 20 C -0.155 4.155 21 H 0.088 0.912 22 H 0.147 0.853 23 H 0.156 0.844 24 H 0.178 0.822 25 H 0.190 0.810 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 4.106 -14.734 -1.913 15.415 hybrid contribution 0.605 0.570 0.478 0.959 sum 4.712 -14.164 -1.435 14.996 Atomic orbital electron populations 1.70062 1.07489 1.29241 1.47124 1.26452 0.96847 1.02183 0.94870 0.84621 0.77767 0.75135 0.79206 1.19083 1.18414 1.18620 1.21389 0.92025 0.81213 1.54682 0.90247 1.83890 1.40279 1.14142 1.76957 1.24230 0.86660 0.88050 0.76385 1.90568 1.17198 1.88617 1.51184 1.20238 0.96642 0.84116 1.08678 1.19389 0.96574 0.94721 0.93182 1.21400 0.96258 0.95669 0.98640 1.21226 0.95537 0.95589 0.97048 1.21132 0.98265 0.97369 0.94255 1.98369 1.54903 1.49945 1.98892 1.17442 0.97716 0.97021 0.80592 1.91500 1.87390 1.86473 1.46030 1.21128 0.97516 0.96398 1.00432 0.91240 0.85310 0.84367 0.82223 0.80992 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.06 13.67 21.62 0.30 -51.77 15 2 C 0.00 -0.18 5.49 84.87 0.47 0.29 15 3 Si 1.01 42.83 29.55 68.60 2.03 44.85 15 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 15 5 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 6 H -0.26 -10.39 7.11 99.48 0.71 -9.68 15 7 C -0.42 -24.70 9.65 67.94 0.66 -24.05 15 8 H 0.08 4.82 6.86 -2.91 -0.02 4.80 15 9 O -0.24 -13.70 9.75 14.85 0.14 -13.56 15 10 C 0.40 18.57 7.90 71.23 0.56 19.13 15 11 O -0.58 -30.21 15.27 20.77 0.32 -29.90 15 12 C -0.06 -1.83 5.94 29.10 0.17 -1.66 15 13 C -0.04 -1.09 4.37 -19.87 -0.09 -1.17 15 14 C -0.10 -2.45 9.70 22.27 0.22 -2.23 15 15 C -0.08 -1.66 9.83 22.29 0.22 -1.44 15 16 C -0.08 -2.09 6.33 22.36 0.14 -1.95 15 17 Cl -0.05 -1.14 28.62 -2.72 -0.08 -1.22 15 18 C 0.09 2.61 7.28 22.39 0.16 2.77 15 19 F -0.14 -3.93 16.84 44.97 0.76 -3.17 15 20 C -0.14 -3.88 9.68 22.31 0.22 -3.67 15 21 H 0.28 14.55 8.31 -92.71 -0.77 13.78 15 22 H 0.13 3.40 8.09 -2.38 -0.02 3.38 15 23 H 0.14 3.44 8.08 -2.39 -0.02 3.42 15 24 H 0.16 3.14 8.06 -2.91 -0.02 3.12 15 25 H 0.17 2.66 8.06 -2.91 -0.02 2.63 15 26 H 0.15 3.95 8.06 -2.91 -0.02 3.93 15 Total: -1.00 -70.76 266.68 7.41 -63.35 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.22 Total: 5.38 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 2.73 Total: -13.98 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.30 Total: -51.77 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: 0.46 Total: -43.45 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.76 Total: -3.17 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -70.76 7.41 -63.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790718915.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.389 kcal (2) G-P(sol) polarization free energy of solvation -70.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds