Wall clock time and date at job start Mon Mar 30 2020 07:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00041 * 2 1 4 4 H 1.48503 * 109.47208 * 270.00506 * 3 2 1 5 5 H 1.48498 * 109.46746 * 30.00512 * 3 2 1 6 6 H 1.48498 * 109.46857 * 150.00545 * 3 2 1 7 7 C 1.37879 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99622 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00238 * 179.97438 * 7 2 1 10 10 C 1.53008 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46804 * 179.97438 * 10 9 7 12 12 O 1.42904 * 109.46836 * 179.97438 * 11 10 9 13 13 C 1.34932 * 117.00310 * 180.02562 * 12 11 10 14 14 O 1.21664 * 119.99666 * 0.02562 * 13 12 11 15 15 C 1.41819 * 120.00365 * 180.02562 * 13 12 11 16 16 S 1.75826 * 125.46644 * 359.97114 * 15 13 12 17 17 C 1.70598 * 91.60991 * 180.02562 * 16 15 13 18 18 C 1.33778 * 111.05003 * 0.02562 * 17 16 15 19 19 C 1.37034 * 125.47382 * 179.97438 * 15 13 12 20 20 F 1.35100 * 123.41016 * 0.02562 * 19 15 13 21 21 H 0.97000 * 119.99979 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47604 * 59.99541 * 9 7 2 23 23 H 1.09008 * 109.47184 * 299.99141 * 9 7 2 24 24 H 1.08997 * 109.46948 * 59.99484 * 10 9 7 25 25 H 1.08994 * 109.46570 * 299.99717 * 10 9 7 26 26 H 1.09005 * 109.47224 * 60.00525 * 11 10 9 27 27 H 1.08994 * 109.47738 * 299.99506 * 11 10 9 28 28 H 1.08000 * 124.47924 * 179.73667 * 17 16 15 29 29 H 1.07990 * 122.44886 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6364 -0.0022 12 8 6.0279 -3.9837 -0.0015 13 6 7.3656 -4.1606 -0.0019 14 8 8.1067 -3.1957 -0.0024 15 6 7.9077 -5.4711 -0.0018 16 16 6.9744 -6.9612 -0.0004 17 6 8.3942 -7.9070 -0.0004 18 6 9.4863 -7.1343 -0.0008 19 6 9.2429 -5.7793 -0.0027 20 9 10.2214 -4.8478 -0.0033 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8887 23 1 3.8745 -0.6801 -0.8913 24 1 3.6578 -3.1506 -0.8907 25 1 3.6586 -3.1501 0.8893 26 1 5.9156 -2.1223 0.8873 27 1 5.9142 -2.1230 -0.8927 28 1 8.4094 -8.9869 0.0044 29 1 10.4856 -7.5436 -0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815331070.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:39 Heat of formation + Delta-G solvation = -106.315541 kcal Electronic energy + Delta-G solvation = -16048.170086 eV Core-core repulsion = 12977.678595 eV Total energy + Delta-G solvation = -3070.491491 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.051 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.19860 -40.43256 -37.93508 -36.52342 -34.07934 -31.91848 -30.69607 -27.65975 -25.60235 -23.41465 -21.94622 -20.38973 -19.99127 -19.00684 -17.34535 -16.92262 -16.72247 -16.63076 -15.88308 -15.39705 -14.79068 -14.36404 -14.21440 -14.13846 -13.20002 -12.94741 -12.75272 -12.37021 -12.35788 -11.92415 -11.44598 -11.06844 -10.96549 -10.72617 -10.43074 -10.02852 -9.81740 -9.72917 -9.44023 -9.24912 -8.88100 -8.56690 -6.07057 -4.06030 -0.15616 0.93019 1.38401 1.69567 2.72136 2.78098 3.30441 3.38056 3.41902 3.83311 4.41671 4.43295 4.72804 4.85420 5.24250 5.26362 5.39124 5.45637 5.48960 5.80649 5.86775 6.28691 6.38381 6.63328 6.78696 7.20944 7.32608 7.70207 7.78308 8.49563 8.97056 9.54581 11.06015 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.043201 B = 0.003855 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.978081 B = 7260.923620 C = 7883.152868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.100 4.100 11 C 0.065 3.935 12 O -0.348 6.348 13 C 0.534 3.466 14 O -0.495 6.495 15 C -0.317 4.317 16 S 0.320 5.680 17 C -0.213 4.213 18 C -0.186 4.186 19 C 0.176 3.824 20 F -0.101 7.101 21 H 0.264 0.736 22 H 0.019 0.981 23 H 0.015 0.985 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.183 0.817 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.103 -17.707 0.026 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.138 4.138 11 C -0.008 4.008 12 O -0.265 6.265 13 C 0.379 3.621 14 O -0.385 6.385 15 C -0.437 4.437 16 S 0.588 5.412 17 C -0.352 4.352 18 C -0.217 4.217 19 C 0.141 3.859 20 F -0.079 7.079 21 H 0.073 0.927 22 H 0.038 0.962 23 H 0.033 0.967 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.200 0.800 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 16.597 -17.579 0.030 24.176 hybrid contribution 2.227 1.513 -0.024 2.693 sum 18.824 -16.066 0.006 24.748 Atomic orbital electron populations 1.69904 1.06271 1.26972 1.50854 1.25014 0.94763 0.99181 0.94463 0.86787 0.80397 0.83579 0.78610 1.20209 1.21273 1.18963 1.21048 0.89021 0.94659 1.51206 0.90781 1.19526 0.97524 0.91055 0.96729 1.21568 0.88471 1.00882 1.02846 1.23160 0.97194 0.78249 1.02235 1.86155 1.22030 1.34535 1.83754 1.18164 0.81943 0.87677 0.74350 1.90941 1.60395 1.41534 1.45654 1.22790 0.96949 0.98670 1.25250 1.83623 1.03821 0.90141 1.63626 1.25430 0.98287 1.06175 1.05292 1.19798 1.02045 0.90529 1.09359 1.16932 0.83504 0.86674 0.98801 1.91595 1.59667 1.64020 1.92659 0.92651 0.96247 0.96679 0.91484 0.91451 0.91557 0.91553 0.79961 0.82250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.13 15 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 6 H -0.27 -6.34 6.54 56.52 0.37 -5.97 15 7 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 15 8 H 0.07 2.24 7.99 -52.48 -0.42 1.82 15 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 15 10 C -0.10 -1.99 5.52 -26.73 -0.15 -2.14 15 11 C 0.07 1.16 5.38 37.16 0.20 1.36 15 12 O -0.35 -5.78 9.87 -41.13 -0.41 -6.18 15 13 C 0.53 8.71 7.73 32.10 0.25 8.96 15 14 O -0.49 -9.46 15.77 -19.39 -0.31 -9.77 15 15 C -0.32 -4.05 6.28 -38.65 -0.24 -4.29 15 16 S 0.32 2.71 22.83 -107.50 -2.45 0.25 15 17 C -0.21 -1.28 10.91 29.17 0.32 -0.96 15 18 C -0.19 -1.43 10.15 -41.35 -0.42 -1.85 15 19 C 0.18 2.05 7.46 -40.23 -0.30 1.75 15 20 F -0.10 -1.39 16.33 2.25 0.04 -1.35 15 21 H 0.26 7.59 8.31 -40.82 -0.34 7.25 15 22 H 0.02 0.46 7.20 -51.93 -0.37 0.09 15 23 H 0.01 0.35 7.57 -51.92 -0.39 -0.04 15 24 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 26 H 0.07 1.18 8.13 -51.93 -0.42 0.75 15 27 H 0.07 1.17 8.13 -51.93 -0.42 0.75 15 28 H 0.18 0.46 8.06 -52.49 -0.42 0.04 15 29 H 0.16 0.83 8.06 -52.49 -0.42 0.41 15 LS Contribution 279.32 15.07 4.21 4.21 Total: -1.00 -33.00 279.32 -6.59 -39.59 By element: Atomic # 1 Polarization: -3.19 SS G_CDS: -2.89 Total: -6.08 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.89 Total: -10.83 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.77 Total: -26.96 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.71 Total: -15.95 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.13 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.45 Total: 0.25 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -33.00 -6.59 -39.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815331070.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.725 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds