Wall clock time and date at job start Mon Mar 30 2020 07:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 120.00041 * 2 1 4 4 H 1.48503 * 109.47208 * 270.00506 * 3 2 1 5 5 H 1.48498 * 109.46746 * 30.00512 * 3 2 1 6 6 H 1.48498 * 109.46857 * 150.00545 * 3 2 1 7 7 C 1.37879 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99622 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00238 * 179.97438 * 7 2 1 10 10 C 1.53008 * 109.47173 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46804 * 179.97438 * 10 9 7 12 12 O 1.42904 * 109.46836 * 179.97438 * 11 10 9 13 13 C 1.34932 * 117.00310 * 180.02562 * 12 11 10 14 14 O 1.21664 * 119.99666 * 0.02562 * 13 12 11 15 15 C 1.41819 * 120.00365 * 180.02562 * 13 12 11 16 16 S 1.75826 * 125.46644 * 359.97114 * 15 13 12 17 17 C 1.70598 * 91.60991 * 180.02562 * 16 15 13 18 18 C 1.33778 * 111.05003 * 0.02562 * 17 16 15 19 19 C 1.37034 * 125.47382 * 179.97438 * 15 13 12 20 20 F 1.35100 * 123.41016 * 0.02562 * 19 15 13 21 21 H 0.97000 * 119.99979 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.47604 * 59.99541 * 9 7 2 23 23 H 1.09008 * 109.47184 * 299.99141 * 9 7 2 24 24 H 1.08997 * 109.46948 * 59.99484 * 10 9 7 25 25 H 1.08994 * 109.46570 * 299.99717 * 10 9 7 26 26 H 1.09005 * 109.47224 * 60.00525 * 11 10 9 27 27 H 1.08994 * 109.47738 * 299.99506 * 11 10 9 28 28 H 1.08000 * 124.47924 * 179.73667 * 17 16 15 29 29 H 1.07990 * 122.44886 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6364 -0.0022 12 8 6.0279 -3.9837 -0.0015 13 6 7.3656 -4.1606 -0.0019 14 8 8.1067 -3.1957 -0.0024 15 6 7.9077 -5.4711 -0.0018 16 16 6.9744 -6.9612 -0.0004 17 6 8.3942 -7.9070 -0.0004 18 6 9.4863 -7.1343 -0.0008 19 6 9.2429 -5.7793 -0.0027 20 9 10.2214 -4.8478 -0.0033 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8887 23 1 3.8745 -0.6801 -0.8913 24 1 3.6578 -3.1506 -0.8907 25 1 3.6586 -3.1501 0.8893 26 1 5.9156 -2.1223 0.8873 27 1 5.9142 -2.1230 -0.8927 28 1 8.4094 -8.9869 0.0044 29 1 10.4856 -7.5436 -0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815331070.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:39 Heat of formation + Delta-G solvation = -126.664416 kcal Electronic energy + Delta-G solvation = -16049.052480 eV Core-core repulsion = 12977.678595 eV Total energy + Delta-G solvation = -3071.373884 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.14601 -41.70033 -38.76004 -37.78501 -35.95544 -33.91056 -31.65250 -29.39258 -26.56112 -24.92154 -23.15386 -22.12645 -20.84769 -20.07229 -19.04257 -18.25509 -17.98740 -17.85933 -16.91535 -16.46364 -16.18545 -15.72381 -15.50727 -15.02685 -14.82446 -14.49338 -14.14977 -13.78951 -13.53476 -13.09582 -12.89317 -12.64623 -12.24562 -12.08856 -12.02996 -11.78796 -11.66853 -11.42270 -11.37068 -10.78164 -10.20290 -9.57402 -8.30799 -6.35443 -0.96763 0.20377 0.74486 0.97196 1.36034 1.37521 1.49218 1.57520 1.62423 2.34861 3.04239 3.09370 3.59896 3.82809 3.96102 4.01116 4.27547 4.34776 4.58753 4.71289 4.71926 4.80826 4.94918 5.10809 5.22569 5.44342 5.47090 5.61044 6.24987 6.49600 6.72013 7.28909 8.85484 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.043201 B = 0.003855 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.978081 B = 7260.923620 C = 7883.152868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.006 3.994 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.532 4.532 8 H 0.038 0.962 9 C -0.010 4.010 10 C -0.089 4.089 11 C 0.074 3.926 12 O -0.348 6.348 13 C 0.534 3.466 14 O -0.537 6.537 15 C -0.372 4.372 16 S 0.347 5.653 17 C -0.172 4.172 18 C -0.193 4.193 19 C 0.171 3.829 20 F -0.121 7.121 21 H 0.267 0.733 22 H 0.024 0.976 23 H 0.023 0.977 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.230 0.770 29 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.979 -19.391 0.011 27.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.172 1.172 7 C -0.570 4.570 8 H 0.057 0.943 9 C -0.047 4.047 10 C -0.127 4.127 11 C 0.000 4.000 12 O -0.264 6.264 13 C 0.382 3.618 14 O -0.430 6.430 15 C -0.490 4.490 16 S 0.614 5.386 17 C -0.310 4.310 18 C -0.223 4.223 19 C 0.134 3.866 20 F -0.099 7.099 21 H 0.076 0.924 22 H 0.043 0.957 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.247 0.753 29 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 18.480 -19.295 0.015 26.717 hybrid contribution 1.609 1.812 -0.020 2.423 sum 20.089 -17.483 -0.005 26.632 Atomic orbital electron populations 1.70048 1.08169 1.28220 1.52353 1.25974 0.95643 1.03405 0.94096 0.85693 0.79494 0.78437 0.79265 1.19133 1.20779 1.17210 1.21379 0.91535 0.93438 1.50687 0.94347 1.19457 0.94456 0.93696 0.97140 1.21325 0.90017 0.98500 1.02863 1.22856 0.95593 0.79175 1.02408 1.86131 1.22825 1.33464 1.84018 1.18686 0.81127 0.88872 0.73111 1.90905 1.60824 1.43156 1.48105 1.22794 0.98240 0.98764 1.29211 1.83556 1.04269 0.88037 1.62697 1.26007 0.96287 1.07987 1.00752 1.20029 1.04071 0.88516 1.09663 1.17541 0.82772 0.87973 0.98350 1.91538 1.60402 1.65201 1.92781 0.92391 0.95748 0.95841 0.91495 0.91509 0.91490 0.91401 0.75302 0.79375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.46 13.96 21.45 0.30 -59.17 15 2 C 0.01 0.35 5.47 84.66 0.46 0.82 15 3 Si 0.95 44.60 27.47 68.60 1.88 46.49 15 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 15 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 15 6 H -0.25 -10.95 6.54 99.48 0.65 -10.30 15 7 C -0.53 -30.77 9.66 25.60 0.25 -30.52 15 8 H 0.04 2.42 7.99 -2.91 -0.02 2.39 15 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 15 10 C -0.09 -3.54 5.52 30.60 0.17 -3.37 15 11 C 0.07 2.61 5.38 71.98 0.39 2.99 15 12 O -0.35 -11.54 9.87 -58.48 -0.58 -12.11 15 13 C 0.53 17.64 7.73 68.71 0.53 18.18 15 14 O -0.54 -21.11 15.77 19.30 0.30 -20.80 15 15 C -0.37 -9.25 6.28 22.87 0.14 -9.10 15 16 S 0.35 4.98 22.83 -56.49 -1.29 3.69 15 17 C -0.17 -1.27 10.91 66.81 0.73 -0.54 15 18 C -0.19 -2.31 10.15 21.12 0.21 -2.09 15 19 C 0.17 3.79 7.46 21.85 0.16 3.95 15 20 F -0.12 -3.34 16.33 44.97 0.73 -2.61 15 21 H 0.27 15.62 8.31 -92.71 -0.77 14.84 15 22 H 0.02 1.12 7.20 -2.39 -0.02 1.10 15 23 H 0.02 1.06 7.57 -2.38 -0.02 1.04 15 24 H 0.07 2.62 8.14 -2.39 -0.02 2.60 15 25 H 0.07 2.62 8.14 -2.39 -0.02 2.60 15 26 H 0.07 2.36 8.13 -2.38 -0.02 2.34 15 27 H 0.07 2.38 8.13 -2.39 -0.02 2.36 15 28 H 0.23 -0.42 8.06 -2.91 -0.02 -0.45 15 29 H 0.19 1.15 8.06 -2.92 -0.02 1.12 15 Total: -1.00 -74.14 279.32 5.63 -68.50 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: 1.11 Total: -3.96 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 3.17 Total: -20.03 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.30 Total: -59.17 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.27 Total: -32.91 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.73 Total: -2.61 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -1.29 Total: 3.69 kcal Total: -74.14 5.63 -68.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815331070.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.163 kcal (2) G-P(sol) polarization free energy of solvation -74.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds