Wall clock time and date at job start Mon Mar 30 2020 07:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 O 1.42896 * 109.47373 * 64.99608 * 3 2 1 14 14 C 1.34933 * 117.00174 * 270.00311 * 13 3 2 15 15 O 1.21665 * 119.99852 * 359.97438 * 14 13 3 16 16 C 1.41822 * 119.99766 * 179.97438 * 14 13 3 17 17 S 1.75819 * 125.47296 * 0.02913 * 16 14 13 18 18 C 1.70595 * 91.61132 * 179.97438 * 17 16 14 19 19 C 1.33765 * 111.05115 * 359.97438 * 18 17 16 20 20 C 1.37042 * 125.46571 * 179.71574 * 16 14 13 21 21 F 1.35100 * 123.41407 * 359.97438 * 20 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 28 28 H 1.08000 * 124.47528 * 179.97438 * 18 17 16 29 29 H 1.08001 * 122.45312 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 8 1.6619 2.0815 1.2210 14 6 0.4725 2.7186 1.2363 15 8 -0.2238 2.7309 0.2387 16 6 0.0342 3.3738 2.4152 17 16 0.9211 3.4471 3.9316 18 6 -0.3145 4.3664 4.6654 19 6 -1.3176 4.5927 3.8099 20 6 -1.1459 4.0566 2.5535 21 9 -2.0502 4.1883 1.5585 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0604 -2.9502 28 1 -0.2900 4.7192 5.6858 29 1 -2.1962 5.1580 4.0835 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816039237.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:17 Heat of formation + Delta-G solvation = -102.450399 kcal Electronic energy + Delta-G solvation = -17107.970242 eV Core-core repulsion = 14037.646357 eV Total energy + Delta-G solvation = -3070.323886 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.051 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.79239 -39.75745 -37.51340 -35.77092 -33.49501 -31.41139 -30.14179 -27.30616 -25.23601 -23.30900 -21.99347 -19.87373 -19.59646 -18.48000 -17.01776 -16.33689 -16.26206 -15.91595 -15.06326 -14.96719 -14.58663 -14.25878 -13.87237 -13.01421 -12.84055 -12.64172 -12.06158 -11.96744 -11.50505 -11.36861 -11.20863 -11.04830 -10.94294 -10.66104 -10.29592 -9.86048 -9.70538 -9.35551 -9.02548 -8.78185 -8.51993 -8.43142 -6.17040 -4.24550 0.27835 1.32254 1.77331 2.08753 3.26713 3.30159 3.32144 3.41757 3.65734 4.22150 4.35561 4.81216 5.12416 5.14839 5.36399 5.60225 6.01235 6.19754 6.25597 6.32736 6.47990 6.88737 6.97395 7.18865 7.23226 7.61881 7.74868 7.92831 8.16002 8.59303 8.87798 9.40537 10.89754 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.029885 B = 0.006190 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.698120 B = 4522.559136 C = 5051.731124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.218 3.782 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.345 6.345 14 C 0.523 3.477 15 O -0.496 6.496 16 C -0.297 4.297 17 S 0.311 5.689 18 C -0.226 4.226 19 C -0.183 4.183 20 C 0.161 3.839 21 F -0.104 7.104 22 H 0.033 0.967 23 H 0.054 0.946 24 H 0.030 0.970 25 H 0.041 0.959 26 H 0.109 0.891 27 H 0.267 0.733 28 H 0.179 0.821 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 6.054 13.481 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.165 3.835 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.738 3.262 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.261 6.261 14 C 0.367 3.633 15 O -0.387 6.387 16 C -0.417 4.417 17 S 0.579 5.421 18 C -0.365 4.365 19 C -0.215 4.215 20 C 0.126 3.874 21 F -0.082 7.082 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.077 0.923 28 H 0.196 0.804 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -4.831 5.365 13.437 15.253 hybrid contribution -0.816 0.566 -0.883 1.329 sum -5.647 5.931 12.554 14.988 Atomic orbital electron populations 1.21870 0.98403 0.99031 1.00778 1.22049 0.92590 0.99427 1.03381 1.20320 0.95140 0.88884 0.79125 0.93512 1.20990 0.89463 1.39172 1.06326 0.91365 1.24886 0.99207 0.94749 0.95050 1.69886 1.35462 1.37678 1.09414 0.86342 0.83896 0.78474 0.77467 1.19937 1.21047 1.19990 1.86151 1.33232 1.62621 1.44114 1.18141 0.81760 0.77413 0.86011 1.90892 1.55225 1.58319 1.34262 1.23080 1.02081 1.14842 1.01657 1.83543 1.16087 1.44338 0.98158 1.25337 1.00018 1.05694 1.05431 1.19748 1.03036 1.06925 0.91795 1.16921 0.86677 0.97501 0.86259 1.91576 1.64290 1.93371 1.58949 0.94755 0.92723 0.95094 0.93970 0.87316 0.92328 0.80386 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.55 37.16 0.32 -2.95 15 2 C -0.14 -3.44 5.48 -26.73 -0.15 -3.59 15 3 C 0.22 5.88 2.22 -27.88 -0.06 5.82 15 4 H 0.05 1.40 7.11 -51.93 -0.37 1.03 15 5 C -0.52 -14.59 8.89 -34.44 -0.31 -14.89 15 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 15 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 15 8 N -0.89 -25.14 11.29 55.43 0.63 -24.52 15 9 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 15 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 13 O -0.34 -8.31 9.45 -41.13 -0.39 -8.70 15 14 C 0.52 11.67 6.15 32.10 0.20 11.86 15 15 O -0.50 -12.33 13.13 -19.39 -0.25 -12.58 15 16 C -0.30 -5.21 6.28 -38.65 -0.24 -5.45 15 17 S 0.31 3.89 22.83 -107.50 -2.45 1.44 15 18 C -0.23 -2.13 10.91 29.16 0.32 -1.81 15 19 C -0.18 -2.04 10.15 -41.36 -0.42 -2.46 15 20 C 0.16 2.52 7.46 -40.22 -0.30 2.22 15 21 F -0.10 -1.83 16.33 2.25 0.04 -1.79 15 22 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.05 1.30 7.75 -51.93 -0.40 0.90 15 24 H 0.03 0.68 6.05 -51.93 -0.31 0.37 15 25 H 0.04 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.11 2.96 5.95 -51.93 -0.31 2.65 15 27 H 0.27 7.15 8.31 -40.82 -0.34 6.81 15 28 H 0.18 0.99 8.06 -52.49 -0.42 0.57 15 29 H 0.16 1.29 8.06 -52.49 -0.42 0.87 15 LS Contribution 270.65 15.07 4.08 4.08 Total: -1.00 -31.15 270.65 -6.75 -37.90 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -2.63 Total: -2.19 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.74 Total: -9.60 kcal Atomic # 7 Polarization: -25.14 SS G_CDS: 0.63 Total: -24.52 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.64 Total: -21.29 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -2.45 Total: 1.44 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.15 -6.75 -37.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039237.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.551 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds