Wall clock time and date at job start Mon Mar 30 2020 07:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 O 1.42896 * 109.47373 * 64.99608 * 3 2 1 14 14 C 1.34933 * 117.00174 * 270.00311 * 13 3 2 15 15 O 1.21665 * 119.99852 * 359.97438 * 14 13 3 16 16 C 1.41822 * 119.99766 * 179.97438 * 14 13 3 17 17 S 1.75819 * 125.47296 * 0.02913 * 16 14 13 18 18 C 1.70595 * 91.61132 * 179.97438 * 17 16 14 19 19 C 1.33765 * 111.05115 * 359.97438 * 18 17 16 20 20 C 1.37042 * 125.46571 * 179.71574 * 16 14 13 21 21 F 1.35100 * 123.41407 * 359.97438 * 20 16 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 28 28 H 1.08000 * 124.47528 * 179.97438 * 18 17 16 29 29 H 1.08001 * 122.45312 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 8 1.6619 2.0815 1.2210 14 6 0.4725 2.7186 1.2363 15 8 -0.2238 2.7309 0.2387 16 6 0.0342 3.3738 2.4152 17 16 0.9211 3.4471 3.9316 18 6 -0.3145 4.3664 4.6654 19 6 -1.3176 4.5927 3.8099 20 6 -1.1459 4.0566 2.5535 21 9 -2.0502 4.1883 1.5585 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0604 -2.9502 28 1 -0.2900 4.7192 5.6858 29 1 -2.1962 5.1580 4.0835 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816039237.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:16 Heat of formation + Delta-G solvation = -121.266020 kcal Electronic energy + Delta-G solvation = -17108.786149 eV Core-core repulsion = 14037.646357 eV Total energy + Delta-G solvation = -3071.139792 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.051 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.08983 -41.53545 -38.68091 -37.55181 -35.52372 -33.42146 -31.41510 -29.30701 -26.50198 -25.18824 -23.51064 -21.78060 -20.78982 -20.02263 -18.79250 -18.01388 -17.80150 -17.43415 -16.76246 -16.61196 -16.02281 -15.40882 -15.03803 -14.79637 -14.73278 -14.17828 -13.53610 -13.40642 -13.33713 -13.20333 -13.01035 -12.81315 -12.59164 -12.15620 -12.03424 -11.80797 -11.60115 -11.39180 -10.83333 -10.53475 -10.12164 -9.54263 -8.27060 -6.44780 -0.87177 0.25844 0.81270 1.06738 1.41885 1.46123 1.54035 1.81545 2.01706 2.43179 3.02438 3.16010 3.75481 4.05039 4.32756 4.34872 4.35792 4.50882 4.70335 4.77954 4.83622 5.03335 5.16369 5.17725 5.31812 5.49549 5.64002 5.93113 6.07546 6.58353 6.89287 7.26370 8.79914 Molecular weight = 258.05amu Principal moments of inertia in cm(-1) A = 0.029885 B = 0.006190 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.698120 B = 4522.559136 C = 5051.731124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.222 3.778 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.261 1.261 11 H -0.278 1.278 12 H -0.269 1.269 13 O -0.349 6.349 14 C 0.520 3.480 15 O -0.540 6.540 16 C -0.366 4.366 17 S 0.338 5.662 18 C -0.174 4.174 19 C -0.190 4.190 20 C 0.163 3.837 21 F -0.123 7.123 22 H 0.064 0.936 23 H 0.033 0.967 24 H 0.031 0.969 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.271 0.729 28 H 0.234 0.766 29 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.589 6.848 16.556 18.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.168 3.832 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.194 1.194 13 O -0.266 6.266 14 C 0.368 3.632 15 O -0.434 6.434 16 C -0.484 4.484 17 S 0.605 5.395 18 C -0.312 4.312 19 C -0.220 4.220 20 C 0.127 3.873 21 F -0.101 7.101 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.251 0.749 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.374 6.165 16.538 18.184 hybrid contribution -1.039 0.411 -1.711 2.044 sum -5.413 6.576 14.827 17.099 Atomic orbital electron populations 1.21713 0.96669 1.00554 0.99763 1.21896 0.94090 0.98229 1.02542 1.20023 0.94883 0.89347 0.78908 0.98048 1.21293 0.90076 1.40207 1.07130 0.91287 1.25848 1.04425 0.93781 0.94260 1.70023 1.37620 1.37829 1.09825 0.85230 0.77409 0.78800 0.77951 1.18592 1.20322 1.19367 1.86121 1.34738 1.63215 1.42497 1.18832 0.80454 0.76605 0.87317 1.90850 1.55990 1.60152 1.36372 1.22961 1.04728 1.18197 1.02563 1.83426 1.16338 1.44541 0.95202 1.25993 0.96987 1.01388 1.06839 1.20006 1.05009 1.07320 0.89632 1.17609 0.85546 0.96826 0.87365 1.91520 1.64889 1.93402 1.60316 0.91735 0.94821 0.95039 0.93249 0.89394 0.92027 0.74948 0.79102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 8.55 71.98 0.62 -5.48 15 2 C -0.13 -6.79 5.48 30.60 0.17 -6.62 15 3 C 0.22 12.60 2.22 29.85 0.07 12.66 15 4 H 0.00 0.11 7.11 -2.39 -0.02 0.09 15 5 C -0.55 -31.69 8.89 25.60 0.23 -31.46 15 6 H 0.07 3.85 7.81 -2.91 -0.02 3.83 15 7 C 0.02 0.93 5.29 84.66 0.45 1.38 15 8 N -0.92 -53.38 11.29 21.45 0.24 -53.14 15 9 Si 0.98 43.12 29.54 68.60 2.03 45.15 15 10 H -0.26 -10.89 7.11 99.48 0.71 -10.18 15 11 H -0.28 -11.80 7.11 99.48 0.71 -11.10 15 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 13 O -0.35 -17.62 9.45 -58.49 -0.55 -18.17 15 14 C 0.52 24.41 6.15 68.71 0.42 24.83 15 15 O -0.54 -28.75 13.13 19.30 0.25 -28.50 15 16 C -0.37 -12.90 6.28 22.88 0.14 -12.76 15 17 S 0.34 7.63 22.83 -56.49 -1.29 6.34 15 18 C -0.17 -2.34 10.91 66.80 0.73 -1.61 15 19 C -0.19 -3.49 10.15 21.12 0.21 -3.27 15 20 C 0.16 4.99 7.46 21.86 0.16 5.15 15 21 F -0.12 -4.42 16.33 44.97 0.73 -3.69 15 22 H 0.06 2.58 8.14 -2.39 -0.02 2.56 15 23 H 0.03 1.68 7.75 -2.39 -0.02 1.66 15 24 H 0.03 1.44 6.05 -2.38 -0.01 1.42 15 25 H 0.05 2.45 8.14 -2.39 -0.02 2.43 15 26 H 0.09 4.98 5.95 -2.39 -0.01 4.97 15 27 H 0.27 14.77 8.31 -92.71 -0.77 13.99 15 28 H 0.23 0.69 8.06 -2.91 -0.02 0.67 15 29 H 0.19 2.18 8.06 -2.91 -0.02 2.15 15 Total: -1.00 -73.24 270.65 5.79 -67.45 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: 1.18 Total: 1.75 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 3.20 Total: -17.18 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.24 Total: -53.14 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.30 Total: -46.67 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.73 Total: -3.69 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 7.63 SS G_CDS: -1.29 Total: 6.34 kcal Total: -73.24 5.79 -67.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816039237.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.817 kcal (2) G-P(sol) polarization free energy of solvation -73.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds