Wall clock time and date at job start Mon Mar 30 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81398 * 109.47291 * 2 1 4 4 C 1.81393 * 103.00363 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.50228 * 305.08175 * 4 3 2 6 6 C 1.53124 * 109.53376 * 65.17267 * 4 3 2 7 7 C 1.53119 * 109.15841 * 177.61547 * 6 4 3 8 8 C 1.53040 * 109.28089 * 302.34776 * 7 6 4 9 9 N 1.46846 * 109.51964 * 59.17912 * 8 7 6 10 10 C 1.46902 * 110.99617 * 174.15808 * 9 8 7 11 11 H 1.09005 * 109.46875 * 179.20609 * 10 9 8 12 12 C 1.52998 * 109.47069 * 59.21445 * 10 9 8 13 13 C 1.53000 * 109.47449 * 299.21154 * 10 9 8 14 14 C 1.50697 * 109.46769 * 294.99773 * 13 10 9 15 15 H 1.07995 * 120.00555 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99760 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99800 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00071 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47240 * 90.00436 * 18 16 14 20 20 H 1.48503 * 109.47097 * 210.00171 * 18 16 14 21 21 H 1.48504 * 109.47136 * 330.00036 * 18 16 14 22 22 C 1.46846 * 111.19997 * 298.25655 * 9 8 7 23 23 H 1.08998 * 109.47642 * 299.99972 * 1 2 3 24 24 H 1.09002 * 109.47372 * 60.00429 * 1 2 3 25 25 H 1.09006 * 109.47084 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46891 * 239.99587 * 2 1 3 27 27 H 1.09009 * 109.47186 * 119.99900 * 2 1 3 28 28 H 1.08998 * 109.52523 * 297.52179 * 6 4 3 29 29 H 1.09003 * 109.52311 * 57.65435 * 6 4 3 30 30 H 1.09004 * 109.50189 * 62.29271 * 7 6 4 31 31 H 1.08998 * 109.50338 * 182.40479 * 7 6 4 32 32 H 1.08996 * 109.46572 * 299.16374 * 8 7 6 33 33 H 1.09004 * 109.46207 * 179.19455 * 8 7 6 34 34 H 1.09005 * 109.47521 * 59.99543 * 12 10 9 35 35 H 1.09000 * 109.47556 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.46798 * 299.99801 * 12 10 9 37 37 H 1.08993 * 109.47254 * 54.99871 * 13 10 9 38 38 H 1.09007 * 109.46959 * 175.00317 * 13 10 9 39 39 H 0.97006 * 119.99822 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.45990 * 181.76055 * 22 9 8 41 41 H 1.08999 * 109.46398 * 301.73978 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9370 1.5058 0.0008 5 1 4.2317 0.8782 0.8418 6 6 4.3781 0.8459 -1.3087 7 6 5.9049 0.7318 -1.3245 8 6 6.5175 2.1246 -1.1604 9 7 6.0658 2.7130 0.1070 10 6 6.7421 3.9914 0.3644 11 1 6.3789 4.4123 1.3020 12 6 6.4467 4.9639 -0.7793 13 6 8.2515 3.7599 0.4599 14 6 8.5527 2.9008 1.6608 15 1 7.7482 2.5542 2.2924 16 6 9.8555 2.5564 1.9526 17 7 10.8352 2.9780 1.1832 18 14 10.2290 1.4908 3.4407 19 1 10.2015 0.0599 3.0445 20 1 11.5742 1.8324 3.9690 21 1 9.2083 1.7332 4.4918 22 6 4.6066 2.8762 0.1265 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8901 28 1 3.9377 -0.1485 -1.3818 29 1 4.0485 1.4532 -2.1517 30 1 6.2305 0.0919 -0.5043 31 1 6.2278 0.3016 -2.2726 32 1 6.2026 2.7598 -1.9882 33 1 7.6046 2.0451 -1.1569 34 1 5.3713 5.1288 -0.8474 35 1 6.9481 5.9127 -0.5882 36 1 6.8098 4.5430 -1.7169 37 1 8.5999 3.2579 -0.4426 38 1 8.7603 4.7185 0.5621 39 1 11.7518 2.7354 1.3883 40 1 4.3059 3.3426 1.0647 41 1 4.3006 3.5076 -0.7075 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829178133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:12 Heat of formation + Delta-G solvation = -18.782753 kcal Electronic energy + Delta-G solvation = -17905.564733 eV Core-core repulsion = 15331.714105 eV Total energy + Delta-G solvation = -2573.850628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.95203 -34.87853 -32.96511 -32.43416 -30.63463 -29.60873 -27.29689 -24.31817 -23.86190 -22.99369 -22.32531 -20.06620 -18.62777 -16.34925 -16.12275 -15.63741 -15.01241 -14.82271 -14.50753 -14.26143 -14.02052 -13.78909 -13.38638 -12.74704 -12.51539 -12.46994 -12.11653 -11.81120 -11.62873 -11.61659 -11.43043 -11.33140 -11.00824 -10.68095 -10.58751 -10.50589 -10.32074 -10.03831 -9.91710 -9.64348 -9.13535 -8.96802 -8.25737 -7.67556 -7.48639 -5.89289 -3.87084 1.65563 2.60417 3.38912 3.44984 3.49412 4.54588 4.58240 4.74867 4.79970 4.84276 4.98960 5.19470 5.28935 5.44004 5.47818 5.52494 5.58450 5.59921 5.76879 5.80163 5.84654 5.86608 5.93915 6.00976 6.05674 6.10768 6.14388 6.24562 6.45812 6.59150 6.65638 6.76914 6.97334 7.53593 7.67355 7.90495 8.00803 8.12327 8.57529 9.19147 9.74801 11.22644 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.024906 B = 0.005240 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.949348 B = 5342.205018 C = 5812.941595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 S -0.275 6.275 4 C -0.042 4.042 5 H 0.095 0.905 6 C -0.111 4.111 7 C -0.113 4.113 8 C 0.052 3.948 9 N -0.507 5.507 10 C 0.088 3.912 11 H 0.071 0.929 12 C -0.185 4.185 13 C 0.029 3.971 14 C -0.491 4.491 15 H 0.061 0.939 16 C 0.051 3.949 17 N -0.904 5.904 18 Si 0.889 3.111 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.275 1.275 22 C 0.075 3.925 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.094 0.906 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.021 0.979 38 H 0.019 0.981 39 H 0.257 0.743 40 H 0.076 0.924 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 -4.520 -5.391 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.235 4.235 3 S -0.047 6.047 4 C -0.171 4.171 5 H 0.113 0.887 6 C -0.150 4.150 7 C -0.153 4.153 8 C -0.075 4.075 9 N -0.231 5.231 10 C -0.020 4.020 11 H 0.089 0.911 12 C -0.244 4.244 13 C -0.008 4.008 14 C -0.529 4.529 15 H 0.079 0.921 16 C -0.148 4.148 17 N -0.545 5.545 18 Si 0.718 3.282 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.200 1.200 22 C -0.054 4.054 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -16.713 -3.911 -4.995 17.877 hybrid contribution 0.813 -1.196 0.166 1.456 sum -15.900 -5.107 -4.829 17.384 Atomic orbital electron populations 1.21505 0.92519 1.02246 1.03076 1.23255 0.99775 0.95689 1.04824 1.86721 1.07224 1.12694 1.98023 1.23210 0.90591 1.01744 1.01521 0.88693 1.21878 0.97128 0.99849 0.96154 1.21613 0.93547 0.98289 1.01844 1.22144 1.01947 0.93659 0.89789 1.62038 1.01955 1.26227 1.32875 1.21924 0.98650 0.85669 0.95739 0.91106 1.22529 0.99902 1.01063 1.00882 1.19242 0.86870 0.97024 0.97689 1.21179 0.91900 1.29791 1.10046 0.92116 1.24998 0.96595 0.96570 0.96661 1.69966 0.99399 1.46481 1.38636 0.86639 0.77300 0.80816 0.83460 1.20961 1.21614 1.20017 1.21761 0.89666 0.92804 1.01207 0.91758 0.91823 0.91362 0.90234 0.90225 0.92479 0.91448 0.90861 0.91756 0.95765 0.88735 0.94057 0.92462 0.92914 0.96119 0.96249 0.93324 0.90581 0.94733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.92 37.16 0.37 -0.74 16 2 C -0.09 -0.87 6.37 37.16 0.24 -0.63 16 3 S -0.27 -3.56 21.15 -107.50 -2.27 -5.84 16 4 C -0.04 -0.60 2.81 -26.65 -0.07 -0.67 16 5 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 6 C -0.11 -1.45 5.17 -26.61 -0.14 -1.59 16 7 C -0.11 -1.67 6.09 -26.65 -0.16 -1.83 16 8 C 0.05 0.92 4.64 -3.83 -0.02 0.90 16 9 N -0.51 -9.53 4.36 -226.69 -0.99 -10.52 16 10 C 0.09 1.79 2.30 -67.71 -0.16 1.64 16 11 H 0.07 1.48 8.08 -51.93 -0.42 1.06 16 12 C -0.18 -3.21 8.50 37.16 0.32 -2.90 16 13 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 14 C -0.49 -13.61 8.84 -34.44 -0.30 -13.92 16 15 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 16 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 17 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 18 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.07 1.21 4.31 -3.84 -0.02 1.19 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.75 7.23 -51.92 -0.38 0.37 16 27 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.06 0.66 7.05 -51.93 -0.37 0.30 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.02 0.40 6.62 -51.93 -0.34 0.06 16 33 H 0.09 1.93 5.93 -51.93 -0.31 1.62 16 34 H 0.04 0.65 6.65 -51.93 -0.35 0.30 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.91 6.52 -51.93 -0.34 0.57 16 37 H 0.02 0.54 6.05 -51.93 -0.31 0.23 16 38 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 41 H 0.03 0.56 6.73 -51.93 -0.35 0.21 16 LS Contribution 324.75 15.07 4.89 4.89 Total: -1.00 -29.06 324.75 -10.17 -39.23 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -7.35 Total: -1.85 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -0.16 Total: -16.58 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.25 Total: -36.82 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -2.27 Total: -5.84 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.06 -10.17 -39.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.446 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds