Wall clock time and date at job start Mon Mar 30 2020 06:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30922 * 1 3 3 Si 1.86807 * 120.00031 * 2 1 4 4 H 1.48491 * 109.47135 * 240.00311 * 3 2 1 5 5 H 1.48498 * 109.46767 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47084 * 120.00114 * 3 2 1 7 7 C 1.39833 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00154 * 197.97600 * 7 2 1 9 9 C 1.41069 * 120.00013 * 17.97081 * 7 2 1 10 10 C 1.40925 * 120.14971 * 204.64638 * 9 7 2 11 11 C 1.36258 * 119.85028 * 180.29496 * 10 9 7 12 12 C 1.39696 * 120.15121 * 359.45648 * 11 10 9 13 13 S 1.76193 * 119.85606 * 180.25676 * 12 11 10 14 14 C 1.81006 * 99.99937 * 0.28810 * 13 12 11 15 15 C 1.52997 * 109.46968 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47077 * 180.02562 * 15 14 13 17 17 F 1.39899 * 109.47481 * 174.99996 * 16 15 14 18 18 F 1.39910 * 109.46684 * 294.99586 * 16 15 14 19 19 C 1.39692 * 120.29182 * 0.54542 * 12 11 10 20 20 C 1.36269 * 120.15065 * 359.72933 * 19 12 11 21 21 H 0.96995 * 119.99908 * 359.97438 * 1 2 3 22 22 H 1.08008 * 120.07642 * 0.02562 * 10 9 7 23 23 H 1.08002 * 119.93011 * 179.71782 * 11 10 9 24 24 H 1.08999 * 109.46944 * 300.00052 * 14 13 12 25 25 H 1.08998 * 109.47108 * 60.00416 * 14 13 12 26 26 H 1.08999 * 109.46893 * 299.99548 * 15 14 13 27 27 H 1.09003 * 109.47946 * 59.99693 * 15 14 13 28 28 H 1.08993 * 109.47673 * 54.99308 * 16 15 14 29 29 H 1.07996 * 119.92259 * 179.70992 * 19 12 11 30 30 H 1.07998 * 120.07337 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 3.0969 1.6965 -1.2125 5 1 1.2782 2.7464 0.0006 6 1 3.0970 1.6964 1.2125 7 6 2.0085 -1.2109 -0.0005 8 1 3.0489 -1.2339 0.2881 9 6 1.3548 -2.4027 -0.3780 10 6 1.8269 -3.6466 0.0866 11 6 1.1945 -4.7944 -0.2867 12 6 0.0737 -4.7393 -1.1188 13 16 -0.7421 -6.2278 -1.5911 14 6 0.2823 -7.4382 -0.7183 15 6 -0.2509 -8.8466 -0.9882 16 6 0.6146 -9.8698 -0.2499 17 9 0.0614 -11.1456 -0.4030 18 9 1.9087 -9.8558 -0.7814 19 6 -0.3995 -3.5096 -1.5829 20 6 0.2270 -2.3546 -1.2217 21 1 -0.4850 0.8400 0.0004 22 1 2.6907 -3.6904 0.7335 23 1 1.5579 -5.7487 0.0649 24 1 1.3109 -7.3656 -1.0714 25 1 0.2505 -7.2363 0.3524 26 1 -1.2796 -8.9195 -0.6354 27 1 -0.2190 -9.0484 -2.0590 28 1 0.6540 -9.6155 0.8092 29 1 -1.2636 -3.4743 -2.2297 30 1 -0.1397 -1.4047 -1.5815 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216279941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:07 Heat of formation + Delta-G solvation = -103.967460 kcal Electronic energy + Delta-G solvation = -15929.538355 eV Core-core repulsion = 12871.521475 eV Total energy + Delta-G solvation = -3058.016881 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.058 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.06400 -47.07205 -37.54591 -34.16222 -33.76142 -30.00196 -29.67980 -26.52513 -25.41445 -22.39889 -21.14863 -20.67079 -17.74821 -17.49177 -17.42326 -16.51169 -16.21186 -15.37985 -14.74208 -14.41011 -13.99222 -13.76905 -13.49347 -13.41436 -12.95315 -12.81056 -12.29376 -12.06046 -11.92660 -11.59191 -11.50614 -11.18736 -11.11061 -10.89140 -10.57471 -10.03313 -9.73213 -9.38969 -9.33753 -8.34768 -7.70900 -6.94786 -6.64459 -4.43472 2.19323 2.57269 2.95073 2.99612 3.01176 3.09144 3.24063 3.76886 3.82538 4.15763 4.33267 4.44930 4.45460 5.01038 5.12535 5.42554 5.54132 5.66307 5.84535 6.01373 6.15621 6.76522 6.89234 7.01801 7.11836 7.45360 7.54537 7.77836 7.89724 8.11175 8.46701 8.72993 8.79923 10.02722 Molecular weight = 258.06amu Principal moments of inertia in cm(-1) A = 0.051543 B = 0.003865 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.100311 B = 7243.498817 C = 7646.812672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.115 3.885 10 C -0.217 4.217 11 C -0.089 4.089 12 C -0.219 4.219 13 S -0.155 6.155 14 C -0.105 4.105 15 C -0.155 4.155 16 C 0.266 3.734 17 F -0.208 7.208 18 F -0.205 7.205 19 C -0.069 4.069 20 C -0.157 4.157 21 H 0.284 0.716 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.335 -10.590 0.091 10.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.483 4.483 8 H 0.098 0.902 9 C 0.111 3.889 10 C -0.238 4.238 11 C -0.111 4.111 12 C -0.331 4.331 13 S 0.083 5.917 14 C -0.254 4.254 15 C -0.194 4.194 16 C 0.211 3.789 17 F -0.189 7.189 18 F -0.186 7.186 19 C -0.092 4.092 20 C -0.178 4.178 21 H 0.095 0.905 22 H 0.114 0.886 23 H 0.110 0.890 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.120 0.880 27 H 0.113 0.887 28 H 0.130 0.870 29 H 0.110 0.890 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.519 -10.700 -0.618 10.825 hybrid contribution 1.469 0.972 0.847 1.954 sum -0.050 -9.728 0.229 9.731 Atomic orbital electron populations 1.69852 1.07658 1.29728 1.33706 1.25971 0.94778 1.01578 0.92082 0.86309 0.80158 0.79861 0.80137 1.18650 1.20184 1.18872 1.19569 0.98313 0.91337 1.39102 0.90154 1.17687 0.90946 0.92059 0.88198 1.20624 1.03891 0.92635 1.06670 1.20318 0.95335 0.97215 0.98254 1.20744 1.04573 0.93824 1.13939 1.84861 1.42234 0.98992 1.65593 1.23308 1.03089 0.95006 1.03967 1.22419 1.00792 0.92720 1.03444 1.21938 0.77246 0.80061 0.99699 1.92978 1.85598 1.43079 1.97274 1.92998 1.40200 1.96518 1.88890 1.20075 0.98468 0.91378 0.99268 1.20992 0.99351 0.96566 1.00849 0.90498 0.88632 0.89011 0.89054 0.89389 0.87965 0.88666 0.87027 0.88968 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.60 10.96 55.54 0.61 -18.99 16 2 C 0.08 1.82 5.13 -17.34 -0.09 1.73 16 3 Si 0.91 17.92 29.60 -169.99 -5.03 12.89 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.45 -11.63 9.03 -37.91 -0.34 -11.97 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 9 C 0.11 2.98 5.57 -106.79 -0.60 2.38 16 10 C -0.22 -5.18 9.74 -39.28 -0.38 -5.57 16 11 C -0.09 -1.94 9.11 -39.75 -0.36 -2.30 16 12 C -0.22 -4.83 6.15 -38.49 -0.24 -5.07 16 13 S -0.16 -2.77 22.06 -107.50 -2.37 -5.14 16 14 C -0.11 -1.45 4.07 37.16 0.15 -1.30 16 15 C -0.15 -1.67 5.44 -26.73 -0.15 -1.82 16 16 C 0.27 2.67 5.29 37.16 0.20 2.87 16 17 F -0.21 -2.34 17.34 2.25 0.04 -2.30 16 18 F -0.20 -2.53 17.02 2.25 0.04 -2.49 16 19 C -0.07 -1.64 9.73 -39.75 -0.39 -2.03 16 20 C -0.16 -4.00 8.63 -39.27 -0.34 -4.34 16 21 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 22 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 23 H 0.09 1.73 5.45 -52.49 -0.29 1.44 16 24 H 0.09 1.32 7.30 -51.92 -0.38 0.94 16 25 H 0.09 1.16 7.54 -51.92 -0.39 0.77 16 26 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 LS Contribution 279.39 15.07 4.21 4.21 Total: -1.00 -26.96 279.39 -8.08 -35.04 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -3.04 Total: 4.20 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -2.53 Total: -27.42 kcal Atomic # 7 Polarization: -19.60 SS G_CDS: 0.61 Total: -18.99 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.08 Total: -4.79 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Atomic # 16 Polarization: -2.77 SS G_CDS: -2.37 Total: -5.14 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -26.96 -8.08 -35.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216279941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.931 kcal (2) G-P(sol) polarization free energy of solvation -26.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds