Wall clock time and date at job start Mon Mar 30 2020 06:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30922 * 1 3 3 Si 1.86807 * 120.00031 * 2 1 4 4 H 1.48491 * 109.47135 * 240.00311 * 3 2 1 5 5 H 1.48498 * 109.46767 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47084 * 120.00114 * 3 2 1 7 7 C 1.39833 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00154 * 197.97600 * 7 2 1 9 9 C 1.41069 * 120.00013 * 17.97081 * 7 2 1 10 10 C 1.40925 * 120.14971 * 204.64638 * 9 7 2 11 11 C 1.36258 * 119.85028 * 180.29496 * 10 9 7 12 12 C 1.39696 * 120.15121 * 359.45648 * 11 10 9 13 13 S 1.76193 * 119.85606 * 180.25676 * 12 11 10 14 14 C 1.81006 * 99.99937 * 0.28810 * 13 12 11 15 15 C 1.52997 * 109.46968 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47077 * 180.02562 * 15 14 13 17 17 F 1.39899 * 109.47481 * 174.99996 * 16 15 14 18 18 F 1.39910 * 109.46684 * 294.99586 * 16 15 14 19 19 C 1.39692 * 120.29182 * 0.54542 * 12 11 10 20 20 C 1.36269 * 120.15065 * 359.72933 * 19 12 11 21 21 H 0.96995 * 119.99908 * 359.97438 * 1 2 3 22 22 H 1.08008 * 120.07642 * 0.02562 * 10 9 7 23 23 H 1.08002 * 119.93011 * 179.71782 * 11 10 9 24 24 H 1.08999 * 109.46944 * 300.00052 * 14 13 12 25 25 H 1.08998 * 109.47108 * 60.00416 * 14 13 12 26 26 H 1.08999 * 109.46893 * 299.99548 * 15 14 13 27 27 H 1.09003 * 109.47946 * 59.99693 * 15 14 13 28 28 H 1.08993 * 109.47673 * 54.99308 * 16 15 14 29 29 H 1.07996 * 119.92259 * 179.70992 * 19 12 11 30 30 H 1.07998 * 120.07337 * 179.97438 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 3.0969 1.6965 -1.2125 5 1 1.2782 2.7464 0.0006 6 1 3.0970 1.6964 1.2125 7 6 2.0085 -1.2109 -0.0005 8 1 3.0489 -1.2339 0.2881 9 6 1.3548 -2.4027 -0.3780 10 6 1.8269 -3.6466 0.0866 11 6 1.1945 -4.7944 -0.2867 12 6 0.0737 -4.7393 -1.1188 13 16 -0.7421 -6.2278 -1.5911 14 6 0.2823 -7.4382 -0.7183 15 6 -0.2509 -8.8466 -0.9882 16 6 0.6146 -9.8698 -0.2499 17 9 0.0614 -11.1456 -0.4030 18 9 1.9087 -9.8558 -0.7814 19 6 -0.3995 -3.5096 -1.5829 20 6 0.2270 -2.3546 -1.2217 21 1 -0.4850 0.8400 0.0004 22 1 2.6907 -3.6904 0.7335 23 1 1.5579 -5.7487 0.0649 24 1 1.3109 -7.3656 -1.0714 25 1 0.2505 -7.2363 0.3524 26 1 -1.2796 -8.9195 -0.6354 27 1 -0.2190 -9.0484 -2.0590 28 1 0.6540 -9.6155 0.8092 29 1 -1.2636 -3.4743 -2.2297 30 1 -0.1397 -1.4047 -1.5815 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216279941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:07 Heat of formation + Delta-G solvation = -116.124440 kcal Electronic energy + Delta-G solvation = -15930.065522 eV Core-core repulsion = 12871.521475 eV Total energy + Delta-G solvation = -3058.544047 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.058 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.90430 -47.92624 -39.37063 -35.66762 -35.04716 -31.84858 -31.47020 -27.72699 -27.05137 -23.48652 -22.97102 -22.30859 -19.31612 -18.58178 -18.37596 -17.81531 -17.40564 -17.07131 -15.95290 -15.73966 -15.52347 -15.17603 -14.81817 -14.53964 -14.29635 -14.06665 -13.74216 -13.70293 -13.31761 -13.07009 -12.88313 -12.71361 -12.44277 -12.31651 -11.88705 -11.59069 -11.47941 -11.14591 -10.96296 -10.08154 -9.56265 -8.73903 -8.26122 -6.31140 0.78244 0.88231 1.08066 1.38235 1.48437 1.52087 1.69378 2.18305 2.63763 2.96207 3.41481 3.42355 3.62703 3.64688 4.07215 4.22598 4.28711 4.33142 4.48003 4.74486 4.90648 4.92097 5.04455 5.17753 5.28661 5.60376 5.70814 5.90164 6.02258 6.25302 6.58805 6.85340 6.92262 8.25655 Molecular weight = 258.06amu Principal moments of inertia in cm(-1) A = 0.051543 B = 0.003865 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.100311 B = 7243.498817 C = 7646.812672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.491 4.491 8 H 0.081 0.919 9 C 0.083 3.917 10 C -0.231 4.231 11 C -0.089 4.089 12 C -0.223 4.223 13 S -0.149 6.149 14 C -0.099 4.099 15 C -0.148 4.148 16 C 0.267 3.733 17 F -0.214 7.214 18 F -0.219 7.219 19 C -0.082 4.082 20 C -0.179 4.179 21 H 0.291 0.709 22 H 0.106 0.894 23 H 0.127 0.873 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.147 0.853 29 H 0.102 0.898 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 -11.806 0.617 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.100 0.900 9 C 0.080 3.920 10 C -0.253 4.253 11 C -0.111 4.111 12 C -0.335 4.335 13 S 0.089 5.911 14 C -0.247 4.247 15 C -0.187 4.187 16 C 0.212 3.788 17 F -0.196 7.196 18 F -0.201 7.201 19 C -0.104 4.104 20 C -0.200 4.200 21 H 0.102 0.898 22 H 0.124 0.876 23 H 0.145 0.855 24 H 0.107 0.893 25 H 0.120 0.880 26 H 0.136 0.864 27 H 0.110 0.890 28 H 0.164 0.836 29 H 0.120 0.880 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.275 -11.936 -0.097 12.005 hybrid contribution 1.324 1.147 0.657 1.871 sum 0.049 -10.789 0.560 10.804 Atomic orbital electron populations 1.69904 1.09114 1.30994 1.34348 1.26820 0.95485 1.04729 0.91027 0.85208 0.78779 0.75331 0.80185 1.18465 1.19149 1.18131 1.19840 0.98670 0.92485 1.40971 0.90046 1.18039 0.91664 0.93311 0.89014 1.20876 1.04538 0.92803 1.07034 1.20676 0.94820 0.98085 0.97530 1.21144 1.04350 0.95606 1.12409 1.84808 1.42495 0.97596 1.66176 1.23396 1.02097 0.95171 1.04083 1.22356 1.01731 0.90976 1.03625 1.22165 0.76113 0.79339 1.01169 1.92969 1.85668 1.43530 1.97391 1.92976 1.41269 1.96539 1.89274 1.20288 0.98766 0.91809 0.99548 1.20953 1.00297 0.96731 1.02019 0.89824 0.87635 0.85538 0.89318 0.88048 0.86428 0.89020 0.83610 0.87988 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.00 10.96 21.81 0.24 -41.76 16 2 C 0.04 1.75 5.13 85.21 0.44 2.18 16 3 Si 0.98 36.98 29.60 68.60 2.03 39.01 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 5 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 6 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 7 C -0.49 -25.86 9.03 23.35 0.21 -25.65 16 8 H 0.08 4.08 7.91 -2.91 -0.02 4.06 16 9 C 0.08 4.45 5.57 -21.27 -0.12 4.33 16 10 C -0.23 -11.09 9.74 22.47 0.22 -10.87 16 11 C -0.09 -3.76 9.11 22.16 0.20 -3.56 16 12 C -0.22 -9.64 6.15 22.97 0.14 -9.50 16 13 S -0.15 -5.01 22.06 -56.49 -1.25 -6.26 16 14 C -0.10 -2.41 4.07 71.98 0.29 -2.11 16 15 C -0.15 -2.70 5.44 30.59 0.17 -2.53 16 16 C 0.27 4.44 5.29 71.98 0.38 4.82 16 17 F -0.21 -4.20 17.34 44.97 0.78 -3.42 16 18 F -0.22 -4.82 17.02 44.97 0.77 -4.06 16 19 C -0.08 -3.91 9.73 22.16 0.22 -3.69 16 20 C -0.18 -9.47 8.63 22.47 0.19 -9.27 16 21 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 22 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 23 H 0.13 4.39 5.45 -2.91 -0.02 4.37 16 24 H 0.09 2.27 7.30 -2.40 -0.02 2.25 16 25 H 0.10 2.26 7.54 -2.40 -0.02 2.24 16 26 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 30 H 0.11 5.77 6.16 -2.91 -0.02 5.75 16 Total: -1.00 -59.07 279.39 6.06 -53.01 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.15 Total: 19.32 kcal Atomic # 6 Polarization: -58.19 SS G_CDS: 2.34 Total: -55.85 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.24 Total: -41.76 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 1.54 Total: -7.48 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -1.25 Total: -6.26 kcal Total: -59.07 6.06 -53.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216279941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.115 kcal (2) G-P(sol) polarization free energy of solvation -59.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds