Wall clock time and date at job start Mon Mar 30 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35952 * 117.00263 * 2 1 4 4 C 1.38961 * 120.05262 * 275.78798 * 3 2 1 5 5 F 1.35093 * 120.03496 * 0.02562 * 4 3 2 6 6 C 1.38292 * 119.92861 * 180.26921 * 4 3 2 7 7 C 1.38300 * 120.04139 * 359.77315 * 6 4 3 8 8 C 1.38330 * 120.10967 * 359.97390 * 7 6 4 9 9 Cl 1.73606 * 119.96188 * 179.97438 * 8 7 6 10 10 C 1.38322 * 120.07118 * 0.02562 * 8 7 6 11 11 C 1.50704 * 120.01962 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47656 * 274.19787 * 11 10 8 13 13 C 1.50693 * 109.47296 * 175.15655 * 12 11 10 14 14 H 1.08007 * 120.00143 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00217 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99616 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00466 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.46916 * 59.99725 * 17 15 13 19 19 H 1.48490 * 109.47501 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46892 * 300.00277 * 17 15 13 21 21 H 1.08999 * 109.46791 * 55.15311 * 1 2 3 22 22 H 1.09002 * 109.47238 * 175.14523 * 1 2 3 23 23 H 1.08992 * 109.47408 * 295.14477 * 1 2 3 24 24 H 1.07995 * 119.97913 * 179.74476 * 6 4 3 25 25 H 1.07999 * 119.93995 * 179.97438 * 7 6 4 26 26 H 1.09005 * 109.47064 * 154.19604 * 11 10 8 27 27 H 1.09006 * 109.47099 * 34.20511 * 11 10 8 28 28 H 1.09003 * 109.46538 * 55.15916 * 12 11 10 29 29 H 1.08997 * 109.46916 * 295.16114 * 12 11 10 30 30 H 0.97001 * 120.00030 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 2.2541 1.8864 -1.1967 5 9 1.8425 1.3400 -2.3616 6 6 2.8872 3.1159 -1.1943 7 6 3.3089 3.6752 -0.0018 8 6 3.0981 3.0070 1.1910 9 17 3.6296 3.7123 2.6856 10 6 2.4653 1.7770 1.1939 11 6 2.2368 1.0498 2.4939 12 6 3.4787 0.2275 2.8436 13 6 3.2973 -0.4045 4.1995 14 1 2.3871 -0.2369 4.7561 15 6 4.2934 -1.1969 4.7296 16 7 5.4020 -1.4007 4.0521 17 14 4.0684 -1.9809 6.4101 18 1 2.8781 -2.8686 6.3867 19 1 5.2743 -2.7779 6.7500 20 1 3.8739 -0.9189 7.4297 21 1 -0.3633 0.5872 -0.8434 22 1 -0.3634 -1.0240 -0.0870 23 1 -0.3634 0.4366 0.9302 24 1 3.0529 3.6394 -2.1242 25 1 3.8036 4.6352 -0.0018 26 1 1.3781 0.3860 2.3929 27 1 2.0452 1.7735 3.2863 28 1 4.3527 0.8786 2.8602 29 1 3.6207 -0.5522 2.0953 30 1 6.1027 -1.9584 4.4248 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260926604.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:56 Heat of formation + Delta-G solvation = -95.694924 kcal Electronic energy + Delta-G solvation = -16960.125405 eV Core-core repulsion = 13888.050752 eV Total energy + Delta-G solvation = -3072.074653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 258.056 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -50.02159 -41.09687 -38.67775 -37.20416 -35.96885 -33.95540 -31.04580 -30.66020 -28.02995 -26.94857 -24.05509 -23.60224 -22.04893 -19.09922 -18.56013 -18.42787 -17.85110 -17.18040 -16.51183 -16.43364 -15.98586 -15.61461 -15.06837 -14.86712 -14.43730 -14.18313 -14.03351 -13.62448 -13.37266 -12.94127 -12.82665 -12.63324 -12.46196 -12.19455 -11.81558 -11.71981 -11.65964 -11.26148 -11.02093 -10.52550 -9.80025 -9.56367 -8.16998 -6.28308 -0.21656 -0.03825 1.11375 1.40394 1.43791 1.51459 2.15488 2.42622 2.65110 3.04642 3.16111 3.59233 3.82752 4.03008 4.25467 4.34435 4.40873 4.51133 4.52948 4.68663 4.79035 4.89455 4.96520 5.12173 5.15030 5.44100 5.50679 5.73524 5.85282 6.23757 6.34653 6.86950 7.40025 8.94694 Molecular weight = 258.06amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.006764 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.575387 B = 4138.612571 C = 4935.798164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.058 3.942 4 C 0.070 3.930 5 F -0.134 7.134 6 C -0.124 4.124 7 C -0.076 4.076 8 C -0.045 4.045 9 Cl -0.056 7.056 10 C -0.071 4.071 11 C -0.063 4.063 12 C 0.048 3.952 13 C -0.540 4.540 14 H 0.062 0.938 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.265 1.265 21 H 0.059 0.941 22 H 0.113 0.887 23 H 0.053 0.947 24 H 0.187 0.813 25 H 0.180 0.820 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.000 1.000 29 H -0.019 1.019 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 11.165 -9.916 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.013 3.987 4 C 0.050 3.950 5 F -0.112 7.112 6 C -0.142 4.142 7 C -0.094 4.094 8 C -0.072 4.072 9 Cl -0.027 7.027 10 C -0.073 4.073 11 C -0.100 4.100 12 C 0.010 3.990 13 C -0.577 4.577 14 H 0.080 0.920 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.787 3.213 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.190 1.190 21 H 0.078 0.922 22 H 0.132 0.868 23 H 0.071 0.929 24 H 0.204 0.796 25 H 0.198 0.802 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.018 0.982 29 H -0.001 1.001 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.868 10.937 -9.818 16.671 hybrid contribution 0.020 -0.749 0.775 1.078 sum -7.848 10.188 -9.043 15.721 Atomic orbital electron populations 1.23269 0.76891 1.05016 1.01386 1.86111 1.22096 1.24044 1.94111 1.18530 1.01366 0.87807 0.91000 1.18288 1.01935 0.94283 0.80458 1.91474 1.88425 1.85780 1.45539 1.21320 0.98864 0.93172 1.00867 1.21281 0.98402 1.01352 0.88401 1.20921 1.02311 0.94736 0.89244 1.98378 1.88491 1.82799 1.33023 1.20236 0.97676 0.93381 0.95992 1.20516 0.99838 0.98003 0.91652 1.18766 0.92300 0.93168 0.94721 1.21592 1.02694 1.29951 1.03506 0.92025 1.25951 0.94818 0.97044 1.01813 1.70109 1.07575 1.39593 1.39958 0.85533 0.77696 0.78653 0.79372 1.19171 1.20893 1.19023 0.92235 0.86831 0.92870 0.79573 0.80247 0.91801 0.90756 0.98157 1.00097 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.90 113.37 1.24 1.97 16 2 O -0.35 -12.77 9.33 -93.01 -0.87 -13.64 16 3 C 0.06 2.05 5.70 22.53 0.13 2.18 16 4 C 0.07 2.05 7.31 22.46 0.16 2.21 16 5 F -0.13 -3.85 17.11 44.97 0.77 -3.08 16 6 C -0.12 -2.71 10.02 22.30 0.22 -2.49 16 7 C -0.08 -1.77 9.82 22.31 0.22 -1.55 16 8 C -0.05 -1.44 6.31 22.31 0.14 -1.30 16 9 Cl -0.06 -1.83 27.29 -2.72 -0.07 -1.91 16 10 C -0.07 -2.67 5.15 -19.76 -0.10 -2.77 16 11 C -0.06 -2.73 4.63 29.85 0.14 -2.59 16 12 C 0.05 2.61 4.95 29.85 0.15 2.75 16 13 C -0.54 -31.34 9.11 25.60 0.23 -31.10 16 14 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 15 C 0.00 0.09 5.46 84.66 0.46 0.55 16 16 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 17 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 23 H 0.05 1.35 7.74 -2.39 -0.02 1.33 16 24 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 25 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 26 H 0.06 2.72 6.80 -2.38 -0.02 2.71 16 27 H 0.07 3.11 7.09 -2.38 -0.02 3.09 16 28 H 0.00 0.00 8.05 -2.39 -0.02 -0.02 16 29 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -69.50 283.51 6.28 -63.22 By element: Atomic # 1 Polarization: -2.74 SS G_CDS: 1.15 Total: -1.59 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 2.99 Total: -32.14 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.28 Total: -57.86 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.87 Total: -13.64 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.77 Total: -3.08 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -0.07 Total: -1.91 kcal Total: -69.50 6.28 -63.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260926604.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.473 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds