Wall clock time and date at job start Mon Mar 30 2020 08:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.39743 * 119.99790 * 179.97438 * 11 10 9 13 13 C 1.38867 * 120.07215 * 359.73193 * 12 11 10 14 14 C 1.38225 * 119.92151 * 179.74060 * 13 12 11 15 15 Cl 1.73604 * 119.96371 * 180.25374 * 14 13 12 16 16 C 1.38411 * 120.07430 * 0.50503 * 14 13 12 17 17 C 1.38254 * 120.13823 * 359.76953 * 16 14 13 18 18 C 1.38217 * 120.07509 * 359.97438 * 17 16 14 19 19 Cl 1.73602 * 120.03625 * 179.97438 * 18 17 16 20 20 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 22 22 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 23 23 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 25 25 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 26 26 H 1.07994 * 120.03810 * 359.97438 * 13 12 11 27 27 H 1.07996 * 119.93386 * 179.74215 * 16 14 13 28 28 H 1.08004 * 119.96461 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.2113 -6.1411 0.0007 13 6 3.5999 -6.1428 -0.0059 14 6 4.2879 -7.3417 -0.0009 15 17 6.0239 -7.3452 -0.0025 16 6 3.5943 -8.5395 0.0002 17 6 2.2117 -8.5410 0.0010 18 6 1.5178 -7.3457 0.0014 19 17 -0.2183 -7.3487 0.0018 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5566 0.8902 23 1 2.8718 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 0.5426 -4.9308 0.0011 26 1 4.1417 -5.2086 -0.0112 27 1 4.1341 -9.4748 -0.0001 28 1 1.6733 -9.4773 0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020038855.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:24 Heat of formation + Delta-G solvation = -20.125774 kcal Electronic energy + Delta-G solvation = -14217.657284 eV Core-core repulsion = 11511.770020 eV Total energy + Delta-G solvation = -2705.887264 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62887 -37.84054 -37.41492 -36.85668 -35.06700 -32.28213 -31.55187 -29.45019 -26.54253 -24.22548 -23.09316 -22.21000 -19.06734 -18.29995 -17.51745 -16.87145 -16.48941 -15.99012 -15.71752 -15.15518 -14.88702 -14.78639 -14.24938 -13.44444 -13.38636 -13.17704 -13.07864 -12.64189 -12.56992 -12.48651 -11.98096 -11.90361 -11.84691 -11.57696 -11.36741 -11.01697 -10.59484 -9.72562 -8.48765 -8.25402 -6.36608 0.02000 0.42932 1.03362 1.24815 1.40689 1.41553 1.54442 2.32309 2.51850 2.57255 3.09851 3.72478 4.15296 4.20651 4.24181 4.47066 4.48240 4.67135 4.82663 4.88415 5.15013 5.24687 5.35434 5.54721 5.57536 5.71913 6.05694 6.21647 6.63401 6.79504 7.33437 8.87099 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.020133 B = 0.005075 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.423581 B = 5515.564391 C = 6885.541293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.020 3.980 10 C 0.143 3.857 11 N -0.735 5.735 12 C 0.229 3.771 13 C -0.198 4.198 14 C 0.017 3.983 15 Cl -0.062 7.062 16 C -0.162 4.162 17 C -0.041 4.041 18 C -0.130 4.130 19 Cl -0.071 7.071 20 H 0.265 0.735 21 H -0.001 1.001 22 H 0.000 1.000 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.402 0.598 26 H 0.135 0.865 27 H 0.164 0.836 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.793 -17.990 -0.006 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.018 4.018 10 C 0.019 3.981 11 N -0.362 5.362 12 C 0.121 3.879 13 C -0.222 4.222 14 C -0.011 4.011 15 Cl -0.033 7.033 16 C -0.183 4.183 17 C -0.060 4.060 18 C -0.162 4.162 19 Cl -0.042 7.042 20 H 0.073 0.927 21 H 0.018 0.982 22 H 0.018 0.982 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.238 0.762 26 H 0.152 0.848 27 H 0.182 0.818 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.761 -17.660 -0.005 18.910 hybrid contribution -0.424 1.256 0.000 1.326 sum 6.337 -16.404 -0.005 17.585 Atomic orbital electron populations 1.70097 1.07807 1.27900 1.51199 1.25946 0.95751 1.03389 0.94482 0.85357 0.79174 0.78578 0.77703 1.18352 1.20474 1.20485 1.21501 0.93792 0.91509 1.51173 0.91475 1.19112 0.94484 0.92465 0.95692 1.21361 0.95051 0.81556 1.00125 1.45198 1.08885 1.02820 1.79320 1.17654 0.91161 0.85657 0.93404 1.20500 0.91391 0.98638 1.11704 1.20786 0.84767 0.94579 1.00957 1.98369 1.09359 1.98946 1.96672 1.20984 0.93182 0.97313 1.06853 1.21032 0.93379 0.96580 0.95017 1.20624 0.84616 0.93980 1.16955 1.98344 1.09848 1.98588 1.97438 0.92658 0.98217 0.98204 0.92567 0.92556 0.76222 0.84763 0.81832 0.81492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.90 15 2 C 0.00 0.15 5.46 84.65 0.46 0.62 15 3 Si 0.97 43.13 29.54 68.60 2.03 45.15 15 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 15 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 7 C -0.54 -29.59 9.11 25.60 0.23 -29.36 15 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 15 9 C 0.02 1.01 5.09 29.85 0.15 1.16 15 10 C 0.14 5.69 4.85 86.38 0.42 6.11 15 11 N -0.74 -25.91 5.69 -339.31 -1.93 -27.84 15 12 C 0.23 7.02 6.65 38.21 0.25 7.28 15 13 C -0.20 -5.68 9.09 22.42 0.20 -5.47 15 14 C 0.02 0.40 6.32 22.31 0.14 0.54 15 15 Cl -0.06 -1.36 28.95 -2.72 -0.08 -1.44 15 16 C -0.16 -3.17 9.82 22.31 0.22 -2.95 15 17 C -0.04 -0.83 9.82 22.27 0.22 -0.61 15 18 C -0.13 -3.42 6.34 22.45 0.14 -3.28 15 19 Cl -0.07 -1.83 27.59 -2.72 -0.08 -1.91 15 20 H 0.26 14.74 8.31 -92.71 -0.77 13.97 15 21 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 15 22 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 15 23 H 0.06 2.20 7.96 -2.39 -0.02 2.18 15 24 H 0.06 2.20 7.94 -2.39 -0.02 2.18 15 25 H 0.40 14.30 7.15 -92.71 -0.66 13.64 15 26 H 0.13 3.98 6.73 -2.91 -0.02 3.96 15 27 H 0.16 2.23 8.06 -2.91 -0.02 2.20 15 28 H 0.17 2.34 8.06 -2.91 -0.02 2.31 15 Total: -1.00 -59.51 277.16 3.19 -56.32 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.52 Total: 10.57 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 2.45 Total: -25.97 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.65 Total: -82.73 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 17 Polarization: -3.19 SS G_CDS: -0.15 Total: -3.35 kcal Total: -59.51 3.19 -56.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020038855.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.194 kcal (2) G-P(sol) polarization free energy of solvation -59.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds