Wall clock time and date at job start Mon Mar 30 2020 08:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00018 * 2 1 4 4 H 1.48501 * 109.47186 * 239.99788 * 3 2 1 5 5 H 1.48499 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47218 * 119.99587 * 3 2 1 7 7 C 1.37882 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99656 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46869 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47196 * 180.02562 * 10 9 7 12 12 C 1.39671 * 119.99975 * 180.02562 * 11 10 9 13 13 C 1.38905 * 120.05711 * 180.02562 * 12 11 10 14 14 C 1.38223 * 119.93300 * 179.97438 * 13 12 11 15 15 Cl 1.73607 * 119.96692 * 179.97438 * 14 13 12 16 16 C 1.38386 * 120.06635 * 359.97438 * 14 13 12 17 17 C 1.38389 * 120.11945 * 359.97438 * 16 14 13 18 18 Cl 1.73606 * 119.96772 * 179.97438 * 17 16 14 19 19 C 1.38218 * 120.06161 * 0.02562 * 17 16 14 20 20 H 0.97000 * 119.99720 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46869 * 60.00064 * 9 7 2 22 22 H 1.08994 * 109.47240 * 299.99931 * 9 7 2 23 23 H 1.09005 * 109.47367 * 59.99802 * 10 9 7 24 24 H 1.09002 * 109.47117 * 299.99798 * 10 9 7 25 25 H 0.96999 * 119.99870 * 359.97438 * 11 10 9 26 26 H 1.07994 * 120.03281 * 359.69604 * 13 12 11 27 27 H 1.08005 * 119.94030 * 179.97438 * 16 14 13 28 28 H 1.08006 * 120.03149 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.2111 -6.1404 0.0003 13 6 1.5177 -7.3440 -0.0008 14 6 2.2115 -8.5396 -0.0009 15 17 1.3458 -10.0444 -0.0016 16 6 3.5953 -8.5382 -0.0004 17 6 4.2885 -7.3404 -0.0004 18 17 6.0246 -7.3433 0.0009 19 6 3.6000 -6.1419 -0.0003 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6240 -2.5567 0.8902 23 1 2.8719 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 0.5427 -4.9308 0.0000 26 1 0.4378 -7.3458 0.0030 27 1 4.1353 -9.4735 -0.0001 28 1 4.1415 -5.2074 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020046814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:21 Heat of formation + Delta-G solvation = -5.513571 kcal Electronic energy + Delta-G solvation = -14046.603037 eV Core-core repulsion = 11341.349405 eV Total energy + Delta-G solvation = -2705.253631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.53144 -36.77956 -36.71057 -35.37565 -33.14953 -30.83213 -30.38476 -28.09445 -24.77806 -22.94729 -21.90518 -20.70920 -17.79257 -16.41903 -16.26853 -15.61787 -14.78763 -14.48651 -14.43013 -14.24505 -13.80096 -13.60670 -12.34921 -12.34261 -12.09855 -11.70068 -11.68788 -11.21111 -11.11414 -11.02483 -10.94045 -10.70785 -10.45341 -9.70729 -9.60586 -9.40450 -8.71751 -8.50934 -7.32138 -6.16620 -4.20654 1.08205 1.40599 1.79792 2.30610 3.25495 3.30304 3.32124 3.62651 3.74319 4.35690 5.05591 5.12727 5.17202 5.20466 5.36115 5.39309 6.01755 6.12615 6.12957 6.16906 6.20294 6.48673 6.57842 7.28534 7.50931 7.55533 7.81303 7.92997 8.20689 8.84762 9.44721 10.94851 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.025791 B = 0.004187 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.379887 B = 6686.413134 C = 7751.346550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.120 3.880 11 N -0.727 5.727 12 C 0.253 3.747 13 C -0.197 4.197 14 C 0.028 3.972 15 Cl -0.070 7.070 16 C -0.181 4.181 17 C 0.030 3.970 18 Cl -0.068 7.068 19 C -0.191 4.191 20 H 0.264 0.736 21 H 0.023 0.977 22 H 0.023 0.977 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.403 0.597 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.334 -16.576 0.002 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.023 4.023 10 C -0.003 4.003 11 N -0.351 5.351 12 C 0.143 3.857 13 C -0.221 4.221 14 C 0.001 3.999 15 Cl -0.042 7.042 16 C -0.203 4.203 17 C 0.002 3.998 18 Cl -0.039 7.039 19 C -0.215 4.215 20 H 0.073 0.927 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.238 0.762 26 H 0.152 0.848 27 H 0.153 0.847 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.353 -16.343 0.002 17.198 hybrid contribution 0.095 0.829 0.002 0.835 sum 5.449 -15.514 0.004 16.443 Atomic orbital electron populations 1.69943 1.06127 1.27125 1.49889 1.25001 0.94898 0.99470 0.94855 0.86565 0.79534 0.82624 0.78782 1.20072 1.21177 1.20077 1.20973 0.93114 0.90355 1.51995 0.92314 1.19275 0.94185 0.90881 0.98000 1.21841 0.96524 0.81946 0.99954 1.45338 1.08851 1.02952 1.77990 1.17568 0.90688 0.86482 0.90937 1.20479 1.00347 0.89502 1.11792 1.20275 0.91393 0.86531 1.01720 1.98362 1.76808 1.32134 1.96848 1.20439 0.91876 0.97474 1.10537 1.20336 0.84200 0.93935 1.01336 1.98366 1.09810 1.98935 1.96791 1.20616 0.92532 0.97812 1.10586 0.92679 0.95878 0.95872 0.92802 0.92803 0.76204 0.84751 0.84733 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.29 55.43 0.74 -24.88 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 15 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.53 -13.98 9.11 -34.44 -0.31 -14.29 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 15 9 C 0.01 0.33 5.09 -27.88 -0.14 0.19 15 10 C 0.12 2.26 4.85 -4.04 -0.02 2.24 15 11 N -0.73 -11.63 5.73 -58.64 -0.34 -11.97 15 12 C 0.25 3.73 6.65 -83.80 -0.56 3.17 15 13 C -0.20 -2.60 9.68 -39.34 -0.38 -2.98 15 14 C 0.03 0.36 6.32 -39.53 -0.25 0.11 15 15 Cl -0.07 -0.79 28.95 -51.86 -1.50 -2.29 15 16 C -0.18 -2.25 9.61 -39.47 -0.38 -2.63 15 17 C 0.03 0.39 6.32 -39.53 -0.25 0.14 15 18 Cl -0.07 -0.82 28.95 -51.86 -1.50 -2.32 15 19 C -0.19 -2.78 9.09 -39.35 -0.36 -3.13 15 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 21 H 0.02 0.58 8.14 -51.93 -0.42 0.15 15 22 H 0.02 0.58 8.14 -51.93 -0.42 0.16 15 23 H 0.05 1.01 7.95 -51.93 -0.41 0.60 15 24 H 0.05 1.01 7.95 -51.93 -0.41 0.60 15 25 H 0.40 6.04 8.48 -40.82 -0.35 5.69 15 26 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 27 H 0.13 1.46 8.06 -52.48 -0.42 1.03 15 28 H 0.14 2.05 6.73 -52.48 -0.35 1.70 15 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -27.11 279.51 -8.92 -36.02 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -2.76 Total: 1.08 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -2.75 Total: -15.64 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.40 Total: -36.84 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -3.00 Total: -4.61 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.11 -8.92 -36.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020046814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.507 kcal (2) G-P(sol) polarization free energy of solvation -27.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds