Wall clock time and date at job start Mon Mar 30 2020 08:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00018 * 2 1 4 4 H 1.48501 * 109.47186 * 239.99788 * 3 2 1 5 5 H 1.48499 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47218 * 119.99587 * 3 2 1 7 7 C 1.37882 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99656 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46869 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47196 * 180.02562 * 10 9 7 12 12 C 1.39671 * 119.99975 * 180.02562 * 11 10 9 13 13 C 1.38905 * 120.05711 * 180.02562 * 12 11 10 14 14 C 1.38223 * 119.93300 * 179.97438 * 13 12 11 15 15 Cl 1.73607 * 119.96692 * 179.97438 * 14 13 12 16 16 C 1.38386 * 120.06635 * 359.97438 * 14 13 12 17 17 C 1.38389 * 120.11945 * 359.97438 * 16 14 13 18 18 Cl 1.73606 * 119.96772 * 179.97438 * 17 16 14 19 19 C 1.38218 * 120.06161 * 0.02562 * 17 16 14 20 20 H 0.97000 * 119.99720 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.46869 * 60.00064 * 9 7 2 22 22 H 1.08994 * 109.47240 * 299.99931 * 9 7 2 23 23 H 1.09005 * 109.47367 * 59.99802 * 10 9 7 24 24 H 1.09002 * 109.47117 * 299.99798 * 10 9 7 25 25 H 0.96999 * 119.99870 * 359.97438 * 11 10 9 26 26 H 1.07994 * 120.03281 * 359.69604 * 13 12 11 27 27 H 1.08005 * 119.94030 * 179.97438 * 16 14 13 28 28 H 1.08006 * 120.03149 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.2111 -6.1404 0.0003 13 6 1.5177 -7.3440 -0.0008 14 6 2.2115 -8.5396 -0.0009 15 17 1.3458 -10.0444 -0.0016 16 6 3.5953 -8.5382 -0.0004 17 6 4.2885 -7.3404 -0.0004 18 17 6.0246 -7.3433 0.0009 19 6 3.6000 -6.1419 -0.0003 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8897 22 1 0.6240 -2.5567 0.8902 23 1 2.8719 -3.6044 0.8905 24 1 2.8718 -3.6044 -0.8895 25 1 0.5427 -4.9308 0.0000 26 1 0.4378 -7.3458 0.0030 27 1 4.1353 -9.4735 -0.0001 28 1 4.1415 -5.2074 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020046814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:20 Heat of formation + Delta-G solvation = -19.496770 kcal Electronic energy + Delta-G solvation = -14047.209394 eV Core-core repulsion = 11341.349405 eV Total energy + Delta-G solvation = -2705.859988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62580 -37.86648 -37.71541 -36.65253 -35.00595 -32.31704 -31.55059 -29.51576 -26.51013 -24.20226 -23.18605 -22.18559 -19.06595 -18.27686 -17.40978 -16.76000 -16.49814 -15.92093 -15.73739 -15.36432 -15.07265 -14.81945 -14.23600 -13.36825 -13.30180 -13.19350 -13.06045 -12.66543 -12.56276 -12.50210 -12.11872 -11.96189 -11.90590 -11.56175 -11.39793 -10.83494 -10.56070 -9.74567 -8.51582 -8.24381 -6.35146 0.02584 0.34197 0.79845 1.30182 1.42305 1.44115 1.51990 2.34484 2.55378 2.55520 3.10984 4.04982 4.09410 4.10511 4.25338 4.26752 4.50982 4.51800 4.86562 5.04177 5.13034 5.16180 5.32607 5.45789 5.58512 5.73770 6.09498 6.26880 6.72807 6.81943 7.34740 8.87491 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.025791 B = 0.004187 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.379887 B = 6686.413134 C = 7751.346550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.021 3.979 10 C 0.143 3.857 11 N -0.732 5.732 12 C 0.239 3.761 13 C -0.193 4.193 14 C 0.024 3.976 15 Cl -0.054 7.054 16 C -0.172 4.172 17 C 0.024 3.976 18 Cl -0.058 7.058 19 C -0.202 4.202 20 H 0.265 0.735 21 H 0.002 0.998 22 H 0.002 0.998 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.406 0.594 26 H 0.147 0.853 27 H 0.154 0.846 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.424 -17.520 0.001 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.017 4.017 10 C 0.019 3.981 11 N -0.359 5.359 12 C 0.131 3.869 13 C -0.216 4.216 14 C -0.003 4.003 15 Cl -0.025 7.025 16 C -0.194 4.194 17 C -0.003 4.003 18 Cl -0.029 7.029 19 C -0.226 4.226 20 H 0.073 0.927 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.242 0.758 26 H 0.165 0.835 27 H 0.171 0.829 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.462 -17.330 0.002 18.496 hybrid contribution -0.232 0.973 0.002 1.001 sum 6.230 -16.357 0.004 17.503 Atomic orbital electron populations 1.70069 1.07727 1.28007 1.51129 1.25912 0.95736 1.03277 0.94525 0.85504 0.78267 0.78095 0.79239 1.19148 1.21019 1.19162 1.21470 0.93784 0.91708 1.51306 0.91620 1.19099 0.94470 0.92238 0.95864 1.21338 0.95077 0.81703 0.99991 1.45031 1.08852 1.02493 1.79492 1.17641 0.90864 0.86284 0.92106 1.20620 1.01082 0.89156 1.10784 1.20358 0.91647 0.87037 1.01289 1.98371 1.76481 1.30912 1.96725 1.20691 0.91958 0.97917 1.08806 1.20394 0.84850 0.93812 1.01276 1.98370 1.08858 1.98916 1.96723 1.20670 0.92608 0.98194 1.11100 0.92662 0.97978 0.97971 0.92763 0.92768 0.75831 0.83500 0.82867 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.23 13.29 21.45 0.28 -53.95 15 2 C 0.00 0.22 5.46 84.66 0.46 0.69 15 3 Si 0.96 42.53 29.54 68.60 2.03 44.56 15 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 7 C -0.54 -29.17 9.11 25.60 0.23 -28.93 15 8 H 0.07 3.34 7.74 -2.91 -0.02 3.32 15 9 C 0.02 1.01 5.09 29.85 0.15 1.16 15 10 C 0.14 5.41 4.85 86.38 0.42 5.83 15 11 N -0.73 -23.37 5.73 -339.43 -1.95 -25.31 15 12 C 0.24 6.83 6.65 38.21 0.25 7.08 15 13 C -0.19 -4.79 9.68 22.43 0.22 -4.57 15 14 C 0.02 0.56 6.32 22.30 0.14 0.70 15 15 Cl -0.05 -1.08 28.95 -2.72 -0.08 -1.15 15 16 C -0.17 -3.88 9.61 22.34 0.21 -3.66 15 17 C 0.02 0.61 6.32 22.30 0.14 0.75 15 18 Cl -0.06 -1.30 28.95 -2.72 -0.08 -1.38 15 19 C -0.20 -5.66 9.09 22.42 0.20 -5.46 15 20 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 21 H 0.00 0.10 8.14 -2.39 -0.02 0.08 15 22 H 0.00 0.10 8.14 -2.39 -0.02 0.08 15 23 H 0.05 2.04 7.95 -2.38 -0.02 2.02 15 24 H 0.05 2.04 7.95 -2.39 -0.02 2.02 15 25 H 0.41 12.26 8.48 -92.71 -0.79 11.47 15 26 H 0.15 3.22 8.06 -2.91 -0.02 3.19 15 27 H 0.15 2.85 8.06 -2.91 -0.02 2.83 15 28 H 0.13 3.87 6.73 -2.91 -0.02 3.85 15 Total: -1.00 -56.89 279.51 3.04 -53.85 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.40 Total: 9.80 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 2.44 Total: -26.42 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.66 Total: -79.26 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.16 Total: -2.53 kcal Total: -56.89 3.04 -53.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020046814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.354 kcal (2) G-P(sol) polarization free energy of solvation -56.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds