Wall clock time and date at job start Mon Mar 30 2020 08:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.39758 * 119.99978 * 180.02562 * 11 10 9 13 13 C 1.38892 * 120.06757 * 359.72148 * 12 11 10 14 14 C 1.38121 * 119.95846 * 179.74456 * 13 12 11 15 15 C 1.38281 * 120.10767 * 0.55748 * 14 13 12 16 16 C 1.38381 * 120.13860 * 359.69972 * 15 14 13 17 17 Cl 1.73601 * 119.98092 * 179.97438 * 16 15 14 18 18 C 1.38325 * 120.03987 * 0.02562 * 16 15 14 19 19 Cl 1.73599 * 120.05512 * 180.02562 * 18 16 15 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 26 26 H 1.08002 * 120.02273 * 0.02562 * 13 12 11 27 27 H 1.08004 * 119.94672 * 180.25764 * 14 13 12 28 28 H 1.07995 * 119.92865 * 179.72087 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.2117 -6.1411 0.0024 13 6 3.6006 -6.1427 -0.0035 14 6 4.2889 -7.3402 0.0023 15 6 3.5975 -8.5377 0.0023 16 6 2.2137 -8.5411 0.0028 17 17 1.3499 -10.0469 0.0021 18 6 1.5184 -7.3453 0.0027 19 17 -0.2176 -7.3491 0.0040 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 0.5429 -4.9308 0.0020 26 1 4.1420 -5.2083 -0.0080 27 1 5.3690 -7.3412 0.0019 28 1 4.1387 -9.4723 0.0022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020246388.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:23 Heat of formation + Delta-G solvation = -4.349139 kcal Electronic energy + Delta-G solvation = -14239.152122 eV Core-core repulsion = 11533.948985 eV Total energy + Delta-G solvation = -2705.203138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 259.023 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.50234 -36.74366 -36.31746 -35.56980 -33.15443 -30.77406 -30.33931 -28.01278 -24.78308 -22.91243 -21.89277 -20.63982 -17.74608 -16.45697 -16.40700 -15.64800 -14.69172 -14.55701 -14.39795 -14.02448 -13.74654 -13.62487 -12.33979 -12.07058 -11.92224 -11.75190 -11.51045 -11.14370 -11.09056 -11.03481 -10.74524 -10.66967 -10.58973 -9.69439 -9.65976 -9.37692 -8.66107 -8.50085 -7.25353 -6.15142 -4.19381 1.09857 1.47470 1.93552 2.37761 3.24384 3.30993 3.33448 3.66675 3.75298 4.36297 4.89083 5.02849 5.21781 5.31877 5.41066 5.49556 6.00073 6.04644 6.13505 6.15660 6.42294 6.56983 6.64096 7.29868 7.53201 7.56668 7.82676 7.93608 8.21634 8.86205 9.45836 10.96363 Molecular weight = 259.02amu Principal moments of inertia in cm(-1) A = 0.040767 B = 0.004278 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.664133 B = 6543.206529 C = 7209.423311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.725 5.725 12 C 0.251 3.749 13 C -0.189 4.189 14 C -0.052 4.052 15 C -0.179 4.179 16 C 0.022 3.978 17 Cl -0.063 7.063 18 C -0.126 4.126 19 Cl -0.059 7.059 20 H 0.263 0.737 21 H 0.023 0.977 22 H 0.023 0.977 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.403 0.597 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -16.570 0.005 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.350 5.350 12 C 0.140 3.860 13 C -0.213 4.213 14 C -0.071 4.071 15 C -0.200 4.200 16 C -0.006 4.006 17 Cl -0.034 7.034 18 C -0.159 4.159 19 Cl -0.031 7.031 20 H 0.073 0.927 21 H 0.041 0.959 22 H 0.041 0.959 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.240 0.760 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.079 -16.333 0.010 17.104 hybrid contribution -0.254 0.825 -0.008 0.864 sum 4.825 -15.507 0.003 16.241 Atomic orbital electron populations 1.69954 1.06132 1.26998 1.49899 1.25009 0.94891 0.99472 0.94902 0.86506 0.79780 0.83007 0.78212 1.20530 1.21117 1.19740 1.20996 0.93096 0.90303 1.51918 0.92265 1.19290 0.94226 0.90871 0.98078 1.21843 0.96514 0.81824 0.99936 1.45510 1.09236 1.02901 1.77345 1.17578 0.91481 0.85246 0.91716 1.20798 0.91323 0.99560 1.09605 1.20895 0.99887 0.91025 0.95333 1.20637 0.90804 0.99212 1.09394 1.20437 0.92239 0.85325 1.02574 1.98361 1.77188 1.31183 1.96712 1.20086 0.84910 0.92382 1.18508 1.98345 1.08807 1.98532 1.97367 0.92733 0.95866 0.95853 0.92728 0.92721 0.76042 0.84421 0.84909 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.11 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.52 -14.02 9.11 -34.44 -0.31 -14.33 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 15 10 C 0.12 2.33 4.85 -4.04 -0.02 2.31 15 11 N -0.73 -12.59 5.69 -58.60 -0.33 -12.92 15 12 C 0.25 3.92 6.65 -83.74 -0.56 3.37 15 13 C -0.19 -2.60 9.31 -39.38 -0.37 -2.96 15 14 C -0.05 -0.59 10.04 -39.61 -0.40 -0.99 15 15 C -0.18 -2.08 9.83 -39.51 -0.39 -2.47 15 16 C 0.02 0.30 6.32 -39.50 -0.25 0.05 15 17 Cl -0.06 -0.78 27.96 -51.86 -1.45 -2.23 15 18 C -0.13 -1.89 6.34 -39.28 -0.25 -2.14 15 19 Cl -0.06 -0.87 26.60 -51.86 -1.38 -2.25 15 20 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.02 0.60 8.14 -51.93 -0.42 0.17 15 22 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.05 1.02 7.94 -51.93 -0.41 0.61 15 24 H 0.05 1.02 7.96 -51.93 -0.41 0.61 15 25 H 0.40 7.07 7.15 -40.82 -0.29 6.78 15 26 H 0.14 1.81 6.73 -52.49 -0.35 1.46 15 27 H 0.13 1.10 8.06 -52.48 -0.42 0.68 15 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 15 LS Contribution 275.61 15.07 4.15 4.15 Total: -1.00 -27.93 275.61 -8.78 -36.70 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -2.70 Total: 1.29 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.78 Total: -15.45 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.40 Total: -38.03 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -2.83 Total: -4.48 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.93 -8.78 -36.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020246388.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.356 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds