Wall clock time and date at job start Mon Mar 30 2020 07:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46907 * 110.99837 * 2 1 4 4 C 1.46894 * 111.00310 * 123.95631 * 2 1 3 5 5 C 1.53003 * 109.47372 * 170.00068 * 4 2 1 6 6 C 1.50699 * 109.47110 * 180.02562 * 5 4 2 7 7 C 1.34183 * 126.54444 * 265.02286 * 6 5 4 8 8 N 1.36878 * 109.99350 * 179.97438 * 7 6 5 9 9 H 0.96998 * 124.99516 * 179.97438 * 8 7 6 10 10 C 1.37367 * 110.01990 * 0.22769 * 8 7 6 11 11 C 1.39699 * 133.11729 * 179.74753 * 10 8 7 12 12 C 1.36001 * 120.38526 * 180.02562 * 11 10 8 13 13 C 1.41145 * 120.57328 * 0.02562 * 12 11 10 14 14 C 1.41318 * 120.07837 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00535 * 24.53427 * 14 13 12 16 16 C 1.39881 * 119.99548 * 204.53583 * 14 13 12 17 17 N 1.30882 * 120.00129 * 17.80926 * 16 14 13 18 18 Si 1.86798 * 119.99600 * 197.80628 * 16 14 13 19 19 H 1.48508 * 109.46802 * 90.00221 * 18 16 14 20 20 H 1.48499 * 109.46785 * 209.99870 * 18 16 14 21 21 H 1.48500 * 109.47450 * 330.00193 * 18 16 14 22 22 C 1.40383 * 119.83519 * 359.61102 * 13 12 11 23 23 C 1.39026 * 119.30230 * 0.61897 * 22 13 12 24 24 H 1.09001 * 109.46846 * 296.04142 * 1 2 3 25 25 H 1.08994 * 109.46902 * 56.04050 * 1 2 3 26 26 H 1.08999 * 109.46446 * 176.04583 * 1 2 3 27 27 H 1.08996 * 109.47158 * 183.95403 * 3 2 1 28 28 H 1.08994 * 109.47255 * 303.96026 * 3 2 1 29 29 H 1.09002 * 109.46348 * 63.95652 * 3 2 1 30 30 H 1.09003 * 109.47347 * 49.99695 * 4 2 1 31 31 H 1.08996 * 109.47386 * 290.00209 * 4 2 1 32 32 H 1.08993 * 109.47019 * 60.00309 * 5 4 2 33 33 H 1.09000 * 109.46878 * 299.99879 * 5 4 2 34 34 H 1.07996 * 125.00417 * 359.97438 * 7 6 5 35 35 H 1.08006 * 119.80633 * 0.02562 * 11 10 8 36 36 H 1.08004 * 119.71136 * 179.97438 * 12 11 10 37 37 H 0.97003 * 120.00308 * 180.02562 * 17 16 14 38 38 H 1.08002 * 120.34604 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5046 -0.9553 0.9702 6 6 4.0445 -1.7417 2.1369 7 6 4.5909 -1.2393 3.2547 8 7 4.9664 -2.2564 4.0901 9 1 5.3844 -2.1384 4.9574 10 6 4.6697 -3.4692 3.5174 11 6 4.8455 -4.7908 3.9346 12 6 4.4471 -5.8213 3.1417 13 6 3.8512 -5.5726 1.8865 14 6 3.4416 -6.6514 1.0707 15 1 3.2070 -7.6068 1.5163 16 6 3.3400 -6.4817 -0.3140 17 7 3.9390 -5.4737 -0.8955 18 14 2.3496 -7.6940 -1.3333 19 1 0.9415 -7.2306 -1.4232 20 1 2.9294 -7.7833 -2.6975 21 1 2.3904 -9.0315 -0.6894 22 6 3.6595 -4.2509 1.4540 23 6 4.0735 -3.2021 2.2673 24 1 -0.3633 0.4512 0.9234 25 1 -0.3633 0.5740 -0.8523 26 1 -0.3632 -1.0252 -0.0709 27 1 3.0828 1.3433 -0.0709 28 1 1.5898 1.9164 -0.8523 29 1 1.7044 1.8723 0.9234 30 1 1.5090 -1.7407 1.1756 31 1 1.7976 -0.2249 2.0627 32 1 3.9910 0.0193 0.9323 33 1 3.7025 -1.4965 0.0450 34 1 4.7160 -0.1873 3.4644 35 1 5.3005 -4.9953 4.8926 36 1 4.5886 -6.8389 3.4749 37 1 3.8682 -5.3558 -1.8557 38 1 3.2048 -4.0511 0.4950 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022001126.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:20 Heat of formation + Delta-G solvation = 49.310687 kcal Electronic energy + Delta-G solvation = -18805.281880 eV Core-core repulsion = 16033.514142 eV Total energy + Delta-G solvation = -2771.767737 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 258.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.94448 -37.32561 -35.87943 -33.10622 -32.38169 -29.26660 -28.76135 -27.44636 -27.07763 -24.79179 -23.86227 -21.38741 -20.83576 -20.20352 -18.29808 -16.96567 -16.67269 -15.32176 -15.11483 -15.01703 -14.66396 -14.46994 -13.65645 -13.24364 -13.13761 -12.75146 -12.45503 -12.27749 -12.02692 -11.71923 -11.60614 -11.39802 -11.24726 -11.09590 -11.05540 -10.99032 -10.58126 -10.25612 -9.99977 -9.64810 -9.27979 -8.89655 -8.29327 -8.11984 -6.99192 -6.54805 -6.48426 -4.08723 2.51209 2.95063 3.18562 3.21334 3.36510 3.74177 4.08102 4.13581 4.29242 4.78757 5.29012 5.33481 5.48960 5.52813 5.62807 5.74287 5.80437 5.91555 5.93897 6.00991 6.02240 6.07386 6.13351 6.41028 6.45300 6.67484 6.80747 7.01584 7.13738 7.23457 7.26702 7.31385 7.40189 7.54067 7.68504 7.95962 8.16800 8.22260 8.38486 8.64802 8.79392 9.06958 9.11989 10.40606 Molecular weight = 258.14amu Principal moments of inertia in cm(-1) A = 0.014043 B = 0.007503 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.415913 B = 3731.148379 C = 5385.668919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.023 3.977 4 C 0.064 3.936 5 C -0.030 4.030 6 C -0.187 4.187 7 C 0.028 3.972 8 N -0.606 5.606 9 H 0.398 0.602 10 C 0.000 4.000 11 C -0.123 4.123 12 C -0.165 4.165 13 C 0.085 3.915 14 C -0.468 4.468 15 H 0.073 0.927 16 C 0.076 3.924 17 N -0.796 5.796 18 Si 0.902 3.098 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.141 4.141 23 C -0.065 4.065 24 H 0.020 0.980 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.020 0.980 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.277 0.723 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 10.013 2.975 10.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.125 4.125 4 C -0.064 4.064 5 C -0.068 4.068 6 C -0.197 4.197 7 C -0.098 4.098 8 N -0.210 5.210 9 H 0.231 0.769 10 C -0.103 4.103 11 C -0.144 4.144 12 C -0.185 4.185 13 C 0.082 3.918 14 C -0.498 4.498 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.423 5.423 18 Si 0.727 3.273 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.162 4.162 23 C -0.069 4.069 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.164 0.836 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.467 9.871 2.407 10.455 hybrid contribution -0.402 -0.040 0.700 0.809 sum -2.869 9.831 3.108 10.702 Atomic orbital electron populations 1.22354 0.87821 1.02327 0.99748 1.61977 1.07428 1.13420 1.44389 1.22411 1.01271 0.89148 0.99698 1.22183 0.96566 0.97936 0.89677 1.19714 0.92664 0.97745 0.96694 1.20031 1.10060 0.92722 0.96887 1.21137 1.04488 0.91958 0.92235 1.41271 1.56905 1.04518 1.18290 0.76853 1.18012 1.10269 0.85934 0.96041 1.19259 1.06151 0.89672 0.99304 1.20653 1.04368 0.96229 0.97283 1.17398 0.90573 0.92858 0.90952 1.19383 1.41297 0.97986 0.91168 0.90862 1.25780 0.93822 0.95859 0.98541 1.69850 1.32717 1.28055 1.11647 0.86429 0.80681 0.81349 0.78870 1.19486 1.20539 1.18920 1.20721 1.05260 0.90006 1.00193 1.18989 1.01911 0.91841 0.94121 0.96134 0.91827 0.91227 0.91010 0.91977 0.96164 0.90351 0.95483 0.92783 0.90484 0.83628 0.89522 0.88429 0.91171 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.57 60.07 0.57 0.90 16 2 N -0.55 -8.14 5.02 -251.26 -1.26 -9.41 16 3 C 0.02 0.28 9.32 60.07 0.56 0.84 16 4 C 0.06 1.06 4.94 -3.83 -0.02 1.04 16 5 C -0.03 -0.53 5.67 -27.88 -0.16 -0.69 16 6 C -0.19 -3.79 5.58 -102.66 -0.57 -4.36 16 7 C 0.03 0.50 11.73 -16.73 -0.20 0.30 16 8 N -0.61 -11.04 6.05 -10.49 -0.06 -11.11 16 9 H 0.40 5.75 8.96 -40.82 -0.37 5.39 16 10 C 0.00 0.00 7.28 -83.77 -0.61 -0.61 16 11 C -0.12 -2.77 9.99 -39.84 -0.40 -3.17 16 12 C -0.17 -4.06 9.69 -39.28 -0.38 -4.44 16 13 C 0.08 2.30 5.57 -106.82 -0.60 1.70 16 14 C -0.47 -12.66 9.04 -37.80 -0.34 -13.01 16 15 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 16 C 0.08 1.98 5.13 -17.34 -0.09 1.89 16 17 N -0.80 -21.32 10.97 55.54 0.61 -20.71 16 18 Si 0.90 19.35 29.59 -169.99 -5.03 14.32 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 C -0.14 -3.77 8.76 -38.48 -0.34 -4.11 16 23 C -0.07 -1.58 6.34 -105.15 -0.67 -2.25 16 24 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 27 H 0.07 0.86 6.47 -51.93 -0.34 0.52 16 28 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 31 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 32 H 0.05 0.83 6.55 -51.93 -0.34 0.49 16 33 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.15 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 36 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 37 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 38 H 0.12 3.41 6.17 -52.49 -0.32 3.09 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -29.48 315.06 -9.78 -39.26 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.56 Total: 8.84 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -3.23 Total: -25.94 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.72 Total: -41.22 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.48 -9.78 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022001126.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.574 kcal (2) G-P(sol) polarization free energy of solvation -29.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds